>gb|AC108428.13| Mus musculus chromosome 3, clone RP23-145M5, complete sequence
          Length = 200331

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 419   tccacctcccgctgcacctctt 440
             ||||||||||||||||||||||
Sbjct: 77726 tccacctcccgctgcacctctt 77705

>gb|AC019216.9|AC019216 Homo sapiens BAC clone RP11-484N11 from 4, complete sequence
          Length = 160858

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 92     catcaaagaaaattacgagatcttgt 117
              |||||||||||||||| |||||||||
Sbjct: 100333 catcaaagaaaattacaagatcttgt 100358

>gb|AC140845.2| Mus musculus BAC clone RP24-386C13 from chromosome 8, complete sequence
          Length = 153426

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 41    taaatacatggcaattgtcttgaaattgaaatc 73
             |||||||||||| | |||||||||| |||||||
Sbjct: 71990 taaatacatggccaatgtcttgaaaatgaaatc 71958

>emb|AL590439.12| Human DNA sequence from clone RP11-394I23 on chromosome 10 Contains a
             novel gene (FLJ13397) (CARP) and a CpG island, complete
             sequence
          Length = 192044

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 57    gtcttgaaattgaaatcaatttacaacaa 85
             ||||||||| ||||||||||| |||||||
Sbjct: 12215 gtcttgaaactgaaatcaattaacaacaa 12187

>emb|AL590425.10| Human DNA sequence from clone RP11-102N5 on chromosome X Contains the
             gene for a novel protein and three CpG islands, complete
             sequence
          Length = 63771

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 41    taaatacatggcaattgtctt 61
             |||||||||||||||||||||
Sbjct: 44142 taaatacatggcaattgtctt 44162

>gb|AC116312.2| Homo sapiens chromosome 5 clone RP11-44B19, complete sequence
          Length = 166538

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 389   ttgccattggtcttcctcttc 409
             |||||||||||||||||||||
Sbjct: 54961 ttgccattggtcttcctcttc 54941

>gb|AC008686.8| Homo sapiens chromosome 19 clone CTB-5E10, complete sequence
          Length = 150192

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 408    tcactgcgctctccacctccc 428
              |||||||||||||||||||||
Sbjct: 108885 tcactgcgctctccacctccc 108865

>gb|AC006957.1|AC006957 Homo sapiens chromosome 5q, Bac clone 104n10 (LBNL H295), complete
             sequence
          Length = 66494

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 389   ttgccattggtcttcctcttc 409
             |||||||||||||||||||||
Sbjct: 25610 ttgccattggtcttcctcttc 25590

>emb|BX255949.3| Zebrafish DNA sequence from clone DKEY-76F5 in linkage group 2,
             complete sequence
          Length = 214484

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 54    attgtcttgaaattgaaatca 74
             |||||||||||||||||||||
Sbjct: 16556 attgtcttgaaattgaaatca 16536

>gb|AC171406.3| Mus musculus  BAC RP24-475O6 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 192548

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 27     gagatgagtacaaataaatacatg 50
              |||||| |||||||||||||||||
Sbjct: 130478 gagatgcgtacaaataaatacatg 130501

>gb|AC163661.4| Mus musculus BAC clone RP23-288B18 from chromosome 10, complete sequence
          Length = 210846

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    gcagcgcacggacacacaca 154
              ||||||||||||||||||||
Sbjct: 122024 gcagcgcacggacacacaca 122005

>gb|AC115898.22| Mus musculus chromosome 7, clone RP24-444C13, complete sequence
          Length = 177754

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 141  cacggacacacacatacacg 160
            ||||||||||||||||||||
Sbjct: 9162 cacggacacacacatacacg 9143

>gb|BC060240.1| Mus musculus cDNA sequence AK122525, mRNA (cDNA clone MGC:77961
           IMAGE:6856073), complete cds
          Length = 5915

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 135 gcagcgcacggacacacaca 154
           ||||||||||||||||||||
Sbjct: 38  gcagcgcacggacacacaca 57

>gb|AC113001.9| Mus musculus chromosome 7, clone RP23-184M4, complete sequence
          Length = 206940

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    cacggacacacacatacacg 160
              ||||||||||||||||||||
Sbjct: 142739 cacggacacacacatacacg 142720

>gb|AC125077.4| Mus musculus BAC clone RP23-473K6 from chromosome 6, complete sequence
          Length = 184783

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    gcacggacacacacatacac 159
              ||||||||||||||||||||
Sbjct: 149124 gcacggacacacacatacac 149143

>gb|AC121926.3| Mus musculus BAC clone RP24-202B3 from chromosome 10, complete sequence
          Length = 185398

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   gcagcgcacggacacacaca 154
             ||||||||||||||||||||
Sbjct: 47775 gcagcgcacggacacacaca 47756

>gb|AC146683.11| Medicago truncatula clone mth2-179n10, complete sequence
          Length = 131133

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     ttgaaattgaaatcaattta 79
              ||||||||||||||||||||
Sbjct: 113492 ttgaaattgaaatcaattta 113511

>emb|AL358934.19| Human DNA sequence from clone RP11-459D20 on chromosome 9 Contains a
             transcription factor IIA small 12 kDa subunit (GTF2A2)
             pseudogene, complete sequence
          Length = 95922

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    aattgtcttgaaattgaaat 72
             ||||||||||||||||||||
Sbjct: 46012 aattgtcttgaaattgaaat 46031

>emb|AL355586.27| Human DNA sequence from clone RP11-59I9 on chromosome 6q16.3-21 Contains
              two novel genes, the 3' end of the C6orf210 gene for
              chromosome 6 open reading frame 210 and three CpG islands,
              complete sequence
          Length = 185311

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    gcagcgcacggacacacaca 154
              ||||||||||||||||||||
Sbjct: 124224 gcagcgcacggacacacaca 124205

>emb|AL356275.20| Human DNA sequence from clone RP11-328D5 on chromosome 1 Contains the
             5' end of a novel gene, a novel gene, the CD34 gene for
             CD34 antigen and the 3' end of the PLXNA2 gene for plexin
             A2, complete sequence
          Length = 198906

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   gattatcttgggcgccttgc 392
             ||||||||||||||||||||
Sbjct: 56685 gattatcttgggcgccttgc 56666

>emb|BX537296.9| Zebrafish DNA sequence from clone DKEYP-86D4 in linkage group 14,
             complete sequence
          Length = 203251

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    caacatttgcatcaaagaaa 102
             ||||||||||||||||||||
Sbjct: 12452 caacatttgcatcaaagaaa 12471

>gb|AC011031.12| Homo sapiens chromosome 8, clone RP11-345I19, complete sequence
          Length = 183771

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     gaaatcaatttacaacaaca 87
              ||||||||||||||||||||
Sbjct: 114785 gaaatcaatttacaacaaca 114766

>gb|AC105221.3| Homo sapiens chromosome 18, clone RP11-480N3, complete sequence
          Length = 165396

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 59   cttgaaattgaaatcaattt 78
            ||||||||||||||||||||
Sbjct: 9711 cttgaaattgaaatcaattt 9730

>gb|AC084393.20| Homo sapiens 12q BAC RP11-453E3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 182489

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 373    gattatcttgggcgccttgc 392
              ||||||||||||||||||||
Sbjct: 169654 gattatcttgggcgccttgc 169635

>gb|AC040965.8| Homo sapiens chromosome 8, clone RP11-481K20, complete sequence
          Length = 189188

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    aacatttgcatcaaagaaaa 103
             ||||||||||||||||||||
Sbjct: 46256 aacatttgcatcaaagaaaa 46275

>gb|AC121769.4| Mus musculus BAC clone RP23-340N4 from chromosome 5, complete sequence
          Length = 186413

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 460    tttgtcctccaatgtcagat 479
              ||||||||||||||||||||
Sbjct: 150522 tttgtcctccaatgtcagat 150541

>gb|AC154141.7| Mus musculus chromosome 7, clone RP24-343G19, complete sequence
          Length = 178391

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 481   caccaccttgagtcctgcaa 500
             ||||||||||||||||||||
Sbjct: 43168 caccaccttgagtcctgcaa 43187

>emb|BX465199.9| Zebrafish DNA sequence from clone DKEY-84I7 in linkage group 5,
             complete sequence
          Length = 218103

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    ttgaaattgaaatcaattta 79
             ||||||||||||||||||||
Sbjct: 73049 ttgaaattgaaatcaattta 73030

>dbj|AP001376.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-775E2, complete
             sequence
          Length = 181300

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    catttgcatcaaagaaaatt 105
             ||||||||||||||||||||
Sbjct: 87354 catttgcatcaaagaaaatt 87373

>gb|AC153484.4| Mus musculus 10 BAC RP23-388B8 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 166648

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 27    gagatgagtacaaataaatacatg 50
             |||||| |||||||||||||||||
Sbjct: 68059 gagatgcgtacaaataaatacatg 68082

>emb|AL844212.8| Mouse DNA sequence from clone RP23-29B20 on chromosome 4, complete
              sequence
          Length = 215351

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     aaatacatggcaattgtctt 61
              ||||||||||||||||||||
Sbjct: 202199 aaatacatggcaattgtctt 202180

>gb|AC152923.2| Mus musculus BAC clone RP24-267O6 from 5, complete sequence
          Length = 187438

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 460  tttgtcctccaatgtcagat 479
            ||||||||||||||||||||
Sbjct: 4388 tttgtcctccaatgtcagat 4407

>ref|NM_199028.1| Mus musculus cDNA sequence AK122525 (AK122525), mRNA
          Length = 5915

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 135 gcagcgcacggacacacaca 154
           ||||||||||||||||||||
Sbjct: 38  gcagcgcacggacacacaca 57

>emb|AL035091.2|HS88L2 Human DNA sequence from clone XX-D88L2 on chromosome 1q32.2-32.3,
             complete sequence
          Length = 160771

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   gattatcttgggcgccttgc 392
             ||||||||||||||||||||
Sbjct: 54797 gattatcttgggcgccttgc 54778

>emb|AL731711.11| Mouse DNA sequence from clone RP23-55A17 on chromosome X, complete
              sequence
          Length = 209999

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    gcacggacacacacatacac 159
              ||||||||||||||||||||
Sbjct: 127305 gcacggacacacacatacac 127286


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,717,471
Number of Sequences: 3902068
Number of extensions: 6717471
Number of successful extensions: 274217
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 274071
Number of HSP's gapped (non-prelim): 146
length of query: 621
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 598
effective length of database: 17,143,297,704
effective search space: 10251692026992
effective search space used: 10251692026992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)