ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal32h22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478920.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1440 Score = 77.8 bits (39), Expect = 2e-11 Identities = 102/123 (82%) Strand = Plus / Minus Query: 115 ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 174 |||||||| ||||||||||| |||| | |||||| | ||||||| ||| ||| || Sbjct: 1240 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 1181 Query: 175 gcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttc 234 ||||| || ||||||||||| ||||||||||||||| |||| ||||| ||||| |||||| Sbjct: 1180 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgacttc 1121 Query: 235 ccc 237 ||| Sbjct: 1120 ccc 1118 Score = 46.1 bits (23), Expect = 0.061 Identities = 29/31 (93%) Strand = Plus / Minus Query: 253 ccgcaccggatgttcttgtcgaagttgtact 283 ||||||||||||| | ||||||||||||||| Sbjct: 1081 ccgcaccggatgtccctgtcgaagttgtact 1051
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 77.8 bits (39), Expect = 2e-11 Identities = 102/123 (82%) Strand = Plus / Plus Query: 115 ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 174 |||||||| ||||||||||| |||| | |||||| | ||||||| ||| ||| || Sbjct: 23760842 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 23760901 Query: 175 gcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttc 234 ||||| || ||||||||||| ||||||||||||||| |||| ||||| ||||| |||||| Sbjct: 23760902 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgacttc 23760961 Query: 235 ccc 237 ||| Sbjct: 23760962 ccc 23760964 Score = 56.0 bits (28), Expect = 6e-05 Identities = 100/124 (80%) Strand = Plus / Plus Query: 114 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 173 ||||||||| ||||||||||| |||| | ||||||||||||| | ||| |||| || Sbjct: 23767024 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 23767083 Query: 174 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 233 ||||| || |||||||| || ||||||||||| | |||| ||||| ||||| ||||| Sbjct: 23767084 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 23767143 Query: 234 cccc 237 |||| Sbjct: 23767144 cccc 23767147 Score = 46.1 bits (23), Expect = 0.061 Identities = 29/31 (93%) Strand = Plus / Plus Query: 253 ccgcaccggatgttcttgtcgaagttgtact 283 ||||||||||||| | ||||||||||||||| Sbjct: 23761001 ccgcaccggatgtccctgtcgaagttgtact 23761031
>dbj|AP005437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1113_E01 Length = 73706 Score = 77.8 bits (39), Expect = 2e-11 Identities = 102/123 (82%) Strand = Plus / Plus Query: 115 ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 174 |||||||| ||||||||||| |||| | |||||| | ||||||| ||| ||| || Sbjct: 15772 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 15831 Query: 175 gcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttc 234 ||||| || ||||||||||| ||||||||||||||| |||| ||||| ||||| |||||| Sbjct: 15832 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgacttc 15891 Query: 235 ccc 237 ||| Sbjct: 15892 ccc 15894 Score = 56.0 bits (28), Expect = 6e-05 Identities = 100/124 (80%) Strand = Plus / Plus Query: 114 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 173 ||||||||| ||||||||||| |||| | ||||||||||||| | ||| |||| || Sbjct: 21954 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 22013 Query: 174 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 233 ||||| || |||||||| || ||||||||||| | |||| ||||| ||||| ||||| Sbjct: 22014 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 22073 Query: 234 cccc 237 |||| Sbjct: 22074 cccc 22077 Score = 46.1 bits (23), Expect = 0.061 Identities = 29/31 (93%) Strand = Plus / Plus Query: 253 ccgcaccggatgttcttgtcgaagttgtact 283 ||||||||||||| | ||||||||||||||| Sbjct: 15931 ccgcaccggatgtccctgtcgaagttgtact 15961
>dbj|AK071404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092E11, full insert sequence Length = 1439 Score = 77.8 bits (39), Expect = 2e-11 Identities = 102/123 (82%) Strand = Plus / Minus Query: 115 ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 174 |||||||| ||||||||||| |||| | |||||| | ||||||| ||| ||| || Sbjct: 1239 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 1180 Query: 175 gcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttc 234 ||||| || ||||||||||| ||||||||||||||| |||| ||||| ||||| |||||| Sbjct: 1179 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgacttc 1120 Query: 235 ccc 237 ||| Sbjct: 1119 ccc 1117 Score = 46.1 bits (23), Expect = 0.061 Identities = 29/31 (93%) Strand = Plus / Minus Query: 253 ccgcaccggatgttcttgtcgaagttgtact 283 ||||||||||||| | ||||||||||||||| Sbjct: 1080 ccgcaccggatgtccctgtcgaagttgtact 1050
>dbj|AB093208.1| Zea mays ache mRNA for hypothetical protein, complete cds Length = 1471 Score = 75.8 bits (38), Expect = 7e-11 Identities = 95/114 (83%) Strand = Plus / Minus Query: 124 gggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagctgcctctgtc 183 ||||| ||||| |||||| | |||||||||||||| | ||| |||| || ||||| || Sbjct: 1227 gggtccgagagcgcgccggcgacgatctggtcgaacacgaacttgttggcagcctcggtg 1168 Query: 184 aagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttcccc 237 |||||||| || ||||||||||| ||||| || |||| |||||| ||||||||| Sbjct: 1167 aagtgcacgccgtcccagctcaccctcttggaggggttctcgcacgacttcccc 1114
>ref|XM_478921.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1757 Score = 56.0 bits (28), Expect = 6e-05 Identities = 100/124 (80%) Strand = Plus / Minus Query: 114 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 173 ||||||||| ||||||||||| |||| | ||||||||||||| | ||| |||| || Sbjct: 1547 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 1488 Query: 174 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 233 ||||| || |||||||| || ||||||||||| | |||| ||||| ||||| ||||| Sbjct: 1487 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 1428 Query: 234 cccc 237 |||| Sbjct: 1427 cccc 1424
>ref|XM_478922.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1115 Score = 56.0 bits (28), Expect = 6e-05 Identities = 100/124 (80%) Strand = Plus / Minus Query: 114 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 173 ||||||||| ||||||||||| |||| | ||||||||||||| | ||| |||| || Sbjct: 896 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 837 Query: 174 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 233 ||||| || |||||||| || ||||||||||| | |||| ||||| ||||| ||||| Sbjct: 836 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 777 Query: 234 cccc 237 |||| Sbjct: 776 cccc 773
>dbj|AK099293.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135D02, full insert sequence Length = 1126 Score = 56.0 bits (28), Expect = 6e-05 Identities = 100/124 (80%) Strand = Plus / Minus Query: 114 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 173 ||||||||| ||||||||||| |||| | ||||||||||||| | ||| |||| || Sbjct: 916 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 857 Query: 174 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 233 ||||| || |||||||| || ||||||||||| | |||| ||||| ||||| ||||| Sbjct: 856 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 797 Query: 234 cccc 237 |||| Sbjct: 796 cccc 793
>dbj|AK073754.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067M09, full insert sequence Length = 1757 Score = 56.0 bits (28), Expect = 6e-05 Identities = 100/124 (80%) Strand = Plus / Minus Query: 114 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 173 ||||||||| ||||||||||| |||| | ||||||||||||| | ||| |||| || Sbjct: 1547 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 1488 Query: 174 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 233 ||||| || |||||||| || ||||||||||| | |||| ||||| ||||| ||||| Sbjct: 1487 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 1428 Query: 234 cccc 237 |||| Sbjct: 1427 cccc 1424
>dbj|AK060131.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B10, full insert sequence Length = 1117 Score = 56.0 bits (28), Expect = 6e-05 Identities = 100/124 (80%) Strand = Plus / Minus Query: 114 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 173 ||||||||| ||||||||||| |||| | ||||||||||||| | ||| |||| || Sbjct: 898 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 839 Query: 174 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 233 ||||| || |||||||| || ||||||||||| | |||| ||||| ||||| ||||| Sbjct: 838 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 779 Query: 234 cccc 237 |||| Sbjct: 778 cccc 775
>gb|BC064194.1| Xenopus tropicalis 2-4-dienoyl-Coenzyme A reductase 2, peroxisomal, mRNA (cDNA clone IMAGE:5307739), partial cds Length = 1322 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 cattgccctttgccctggca 101 |||||||||||||||||||| Sbjct: 1183 cattgccctttgccctggca 1164
>emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49 Length = 199075 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 tggaaaaataatcctacatt 54 |||||||||||||||||||| Sbjct: 9283 tggaaaaataatcctacatt 9264
>emb|AL021710.1|ATF28J12 Arabidopsis thaliana DNA chromosome 4, BAC clone F28J12 (ESSAII project) Length = 110102 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 tggaaaaataatcctacatt 54 |||||||||||||||||||| Sbjct: 90461 tggaaaaataatcctacatt 90442
>gb|AC149152.3| Xenopus tropicalis clone ISB-217F3, complete sequence Length = 53218 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 cattgccctttgccctggca 101 |||||||||||||||||||| Sbjct: 16968 cattgccctttgccctggca 16987
>emb|BX649232.1| Mouse DNA sequence from clone RP23-271J11 on chromosome 2, complete sequence Length = 71295 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 gtaagctgcctctgtcaagt 187 |||||||||||||||||||| Sbjct: 8565 gtaagctgcctctgtcaagt 8584 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,823,204 Number of Sequences: 3902068 Number of extensions: 1823204 Number of successful extensions: 34115 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34076 Number of HSP's gapped (non-prelim): 28 length of query: 287 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 265 effective length of database: 17,147,199,772 effective search space: 4544007939580 effective search space used: 4544007939580 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
