ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal32h16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CCNB1_SOYBN (P25011) G2/mitotic-specific cyclin S13-6 (B-like cy... 38 0.026
2SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment) 33 0.65
3VAV2_HUMAN (P52735) Protein vav-2 32 1.1
4YMBA_SHIFL (P0AB11) Hypothetical protein ymbA 32 1.1
5YMBA_ECOLI (P0AB10) Hypothetical protein ymbA 32 1.1
6VAV2_MOUSE (Q60992) Protein vav-2 31 2.5
7S26A3_RAT (Q924C9) Chloride anion exchanger (DRA protein) (Down-... 30 4.2
8UBIG_BORPE (Q7VZG7) 3-demethylubiquinone-9 3-methyltransferase (... 30 5.5
9COL6_CAEEL (P18831) Cuticle collagen 6 (Protein roller-8) 30 5.5
10NU2M_PICCA (P48906) NADH-ubiquinone oxidoreductase chain 2 (EC 1... 30 5.5
11MYO15_MOUSE (Q9QZZ4) Myosin-15 (Myosin XV) (Unconventional myosi... 30 5.5
12GR64D_DROME (Q9VZJ6) Putative gustatory receptor 64d 30 7.2
13ISPH_FRATT (Q5NGK4) 4-hydroxy-3-methylbut-2-enyl diphosphate red... 29 9.4
14PAK7_HUMAN (Q9P286) Serine/threonine-protein kinase PAK 7 (EC 2.... 29 9.4

>CCNB1_SOYBN (P25011) G2/mitotic-specific cyclin S13-6 (B-like cyclin)|
          Length = 454

 Score = 37.7 bits (86), Expect = 0.026
 Identities = 32/84 (38%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
 Frame = -2

Query: 520 GRKHARDRDIGNVVHDSKIQLPAGTNRPLTRRLGAQLLKKAQA---------NPCKNSVV 368
           GR      DIGN+ +   + + A  NRP+TR  GAQLL  AQA           C N V 
Sbjct: 31  GRNRKALGDIGNLANVRGV-VDAKPNRPITRSFGAQLLANAQAAAAADNSKRQACAN-VA 88

Query: 367 VPPAA---------RVTLKPVNKK 323
            PPA          R   KPV+KK
Sbjct: 89  GPPAVANEGVAVAKRAAPKPVSKK 112



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>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)|
          Length = 415

 Score = 33.1 bits (74), Expect = 0.65
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
 Frame = -2

Query: 556 QGSPRRRQPPWCGRKHARDRDIGNVVHDSKIQ-LPAGTNRPLTRRLGAQLLKKAQ---AN 389
           QG P +++PP  G++H     +G        Q LP+ T+ P      AQ L +AQ   + 
Sbjct: 205 QGPPLQQRPPPQGQQHLSG--LGPPAGSPLPQRLPSPTSAPQQPVSQAQPLSQAQGRQSR 262

Query: 388 PCKNSVVVPPAARVTLKPVNKKQSNAGDGCRET 290
           P       PPAAR    P  ++Q+      R+T
Sbjct: 263 PVAGGPGAPPAARPPASPSPQRQAGPPQATRQT 295



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>VAV2_HUMAN (P52735) Protein vav-2|
          Length = 878

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
 Frame = -1

Query: 329 QEAIQCWGWLQGNMNSGSKIEDTKYKITSFQGRV---------LGAPMIQGKWYLKPVIN 177
           +EA++    L   +N   + ++T  KI+ FQ  +          G P I G+  ++ ++N
Sbjct: 360 KEALEAMQDLAMYINEVKRDKETLRKISEFQSSIENLQVKLEEFGRPKIDGELKVRSIVN 419

Query: 176 HEGC*LWLSYFNNVLVSCHSRVTKYNM 96
           H     +L  F+ V++ C  +   Y +
Sbjct: 420 HTKQDRYLFLFDKVVIVCKRKGYSYEL 446



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>YMBA_SHIFL (P0AB11) Hypothetical protein ymbA|
          Length = 182

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 308 GWLQGNMNSGSKIEDTKYKITSFQGRVLGAPMIQGKWYLKPVINHEG 168
           GW+  +   GS  +     +T F GR  G  ++ G+W    ++NH+G
Sbjct: 96  GWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEW----LLNHQG 138



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>YMBA_ECOLI (P0AB10) Hypothetical protein ymbA|
          Length = 182

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 308 GWLQGNMNSGSKIEDTKYKITSFQGRVLGAPMIQGKWYLKPVINHEG 168
           GW+  +   GS  +     +T F GR  G  ++ G+W    ++NH+G
Sbjct: 96  GWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEW----LLNHQG 138



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>VAV2_MOUSE (Q60992) Protein vav-2|
          Length = 868

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
 Frame = -1

Query: 329 QEAIQCWGWLQGNMNSGSKIEDTKYKITSFQGRV---------LGAPMIQGKWYLKPVIN 177
           +EA++    L   +N   + ++T  KI+ FQ  +          G P I G+  ++ ++N
Sbjct: 355 KEALEAMQDLAMYINEVKRDKETLKKISEFQCSIENLQVKLEEFGRPKIDGELKVRSIVN 414

Query: 176 HEGC*LWLSYFNNVLVSCHSRVTKYNM 96
           H     +L  F+ V++ C  +   Y +
Sbjct: 415 HTKQDRYLFLFDKVVIVCKRKGYSYEL 441



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>S26A3_RAT (Q924C9) Chloride anion exchanger (DRA protein) (Down-regulated in|
           adenoma) (Solute carrier family 26 member 3)
          Length = 757

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 255 ILCIFYFGSRVHVSLQPSPALDCFLFTGLRVTRAAGGTTT 374
           ++  F+ G+  H+S+ P P L   +  G+ VTR A G+ T
Sbjct: 113 VITYFFLGTSRHISVGPFPVLS--MMVGVVVTRVASGSDT 150



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>UBIG_BORPE (Q7VZG7) 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64)|
           (3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase)
           (DHHB methyltransferase)
          Length = 241

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = +2

Query: 404 LQELSAQPPGEWSIGPCR*LDLAVVDNVANVPITCMFPPAPGRLTPARAALSSPGGTATQ 583
           ++EL+A+ PG++ +  C    + ++++V          P P  +  A AAL+ PGG    
Sbjct: 114 VEELAAEQPGQYDVVTC----MEMLEHV----------PDPASVVRACAALAKPGGWVFF 159

Query: 584 GGLNR 598
             LNR
Sbjct: 160 STLNR 164



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>COL6_CAEEL (P18831) Cuticle collagen 6 (Protein roller-8)|
          Length = 329

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 589 SSLCCGTTRGAQGSPRRRQPPWCGRKHARDRDIGNVVHDSKIQLPAGTNRP 437
           +++CC   +GA G P    PP    K  R+ + G    D+++ LPA  + P
Sbjct: 133 AAVCCTCNQGAAGPPGPEGPPGNDGKDGRNGNDGKNGRDAEV-LPAPASEP 182



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>NU2M_PICCA (P48906) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 567

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 248 LFYTLYLLFWIQSSCFPATIPSIGLLLVYWLEGYPRCWRNNYAVLAW--IGLGLLQELSA 421
           + Y + LL++I S+ F   I  I  L +Y +        NN  ++ W  I +GLL ++ A
Sbjct: 202 ILYGISLLYYITSNIFINNINLIYSLDIYNI--------NNNILIGWLFIIIGLLIKIGA 253

Query: 422 QPPGEWSI 445
            P   WSI
Sbjct: 254 APMYNWSI 261



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>MYO15_MOUSE (Q9QZZ4) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3511

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 15/76 (19%)
 Frame = -2

Query: 538  RQPPWCGRKHARDRDIGNVV------HDSKIQLPAGTNRPLTRRLGAQLLKKAQA----- 392
            +QPPW G   AR  D G V       H+  + +  G    L    G Q+ ++A A     
Sbjct: 2565 KQPPWAGHPEARRTDGGKVFRRPPDPHEEALMILKGQKTQLAVVPGTQVSREAVAMVKPV 2624

Query: 391  ----NPCKNSVVVPPA 356
                 PC     V P+
Sbjct: 2625 TSAPRPCMGPTPVQPS 2640



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>GR64D_DROME (Q9VZJ6) Putative gustatory receptor 64d|
          Length = 429

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 162 LASFMVYHWLQVPLALNHGGSQYTPLK*SYFILCIFYFGSRVHVS 296
           +A FM    L   + LN G   YT    S+ ++CIF FGS + +S
Sbjct: 73  IADFM----LSTKIVLNDGLQLYTMGSLSFSVICIFCFGSFIKLS 113



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>ISPH_FRATT (Q5NGK4) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 318

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 15  MHTNKXPVIILHNILHTKVEVVSLRKWHVV 104
           +   K PV + H ++H KV V SL+K  VV
Sbjct: 26  LEVEKSPVYVRHEVVHNKVVVDSLKKKGVV 55



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>PAK7_HUMAN (Q9P286) Serine/threonine-protein kinase PAK 7 (EC 2.7.11.1)|
           (p21-activated kinase 7) (PAK-7) (PAK-5)
          Length = 719

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 25/65 (38%), Positives = 29/65 (44%)
 Frame = +2

Query: 26  QGPCHYSSQHTTYKS*SGFFKKMACCTLSLLSGN*QARC*SRITTISILHGLSLASSTTC 205
           Q    YSS    Y S  G+ K       SL S +        I+T S L  LSL+SST  
Sbjct: 361 QSKSGYSSSSHQYPS--GYHKATLYHHPSLQSSS------QYISTASYLSSLSLSSSTYP 412

Query: 206 PESWG 220
           P SWG
Sbjct: 413 PPSWG 417


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,320,177
Number of Sequences: 219361
Number of extensions: 2295624
Number of successful extensions: 6189
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6185
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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