>IMB1_MOUSE (P70168) Importin beta-1 subunit (Karyopherin beta-1 subunit)|
           (Nuclear factor P97) (Pore targeting complex 97 kDa
           subunit) (PTAC97) (SCG)
          Length = 876

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -3

Query: 459 LCEMLVQSTGSDLYLLPALPRNKWPHGSVKGLRARGGVTVNICWKEGSLHEA 304
           +CE+L ++  +D+YL P L         ++GL A   V  N+CW   SL EA
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEA 480

>IMB1_HUMAN (Q14974) Importin beta-1 subunit (Karyopherin beta-1 subunit)|
           (Nuclear factor P97) (Importin 90)
          Length = 876

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -3

Query: 459 LCEMLVQSTGSDLYLLPALPRNKWPHGSVKGLRARGGVTVNICWKEGSLHEA 304
           +CE+L ++  +D+YL P L         ++GL A   V  N+CW   SL EA
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEA 480

>IMB1_RAT (P52296) Importin beta-1 subunit (Karyopherin beta-1 subunit)|
           (Nuclear factor P97)
          Length = 875

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -3

Query: 459 LCEMLVQSTGSDLYLLPALPRNKWPHGSVKGLRARGGVTVNICWKEGSLHEA 304
           +CE+L ++  +D+YL P L         ++GL A   V  N+CW   SL EA
Sbjct: 434 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEA 479

>PDP1_BOVIN (P35816) [Pyruvate dehydrogenase [lipoamide]]-phosphatase 1,|
           mitochondrial precursor (EC 3.1.3.43) (PDP 1) (Pyruvate
           dehydrogenase phosphatase, catalytic subunit 1) (PDPC 1)
           (Protein phosphatase 2C)
          Length = 538

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +3

Query: 549 RDSDLSK*LAAESFCMHAHCCEDEPTGPSSM-K*TTXGLYHLFY--KEYWQQPCRGXVFA 719
           R+ +LS+      +C H H C   P  P S  + T    Y  FY  KE W Q  +G  +A
Sbjct: 13  RNCELSRIYGTACYCHHKHLCCSPPYIPQSRPRYTPHPAYATFYRPKESWWQYTQGRRYA 72

>SALM_DROVI (P39806) Homeotic protein spalt-major|
          Length = 1402

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
 Frame = -3

Query: 516  LFTAHPPFQIDANFG-FPAA----LCEMLVQSTGSDLYLLPALPRNKWPHGSVKGLRARG 352
            L +A PPF +  N   FP A    +C  + Q   S   ++PA P N      V     RG
Sbjct: 1283 LISARPPFGMFPNLPIFPPATTQNMCNAMNQIAQS---VMPAAPFNPLALSGV-----RG 1334

Query: 351  GVTVNICWKEGSLHEAL 301
              T  IC+K    H AL
Sbjct: 1335 STTCGICYKTFPCHSAL 1351

>RHSA_ECOLI (P16916) Protein rhsA precursor|
          Length = 1377

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 624  WAHLHNSEHAYKMILQLITLIDPNHERDKEGGLYSNLFTAHPPFQ 490
            W +L N E+ +++  QLI L  P  + D+E GLY N    + P Q
Sbjct: 1173 WGNLLNEENPHQL-QQLIRL--PGQQYDEESGLYYNRHRYYDPLQ 1214

>YBFO_ECOLI (P77779) Hypothetical protein ybfO|
          Length = 477

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 624 WAHLHNSEHAYKMILQLITLIDPNHERDKEGGLYSNLFTAHPPFQ 490
           W +L N E+ +++  QLI L  P  + D+E GLY N    + P Q
Sbjct: 251 WGNLLNEENPHQL-QQLIRL--PGQQYDEESGLYYNRHRYYDPLQ 292

>RHSC_ECOLI (P16918) Protein rhsC precursor|
          Length = 1397

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 624  WAHLHNSEHAYKMILQLITLIDPNHERDKEGGLYSNLFTAHPPFQ 490
            W +L N E+ +++  QLI L  P  + D+E GLY N    + P Q
Sbjct: 1173 WGNLLNEENPHQL-QQLIRL--PGQQYDEESGLYYNRHRYYDPLQ 1214

>RHSB_ECOLI (P16917) Protein rhsB precursor|
          Length = 1411

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 624  WAHLHNSEHAYKMILQLITLIDPNHERDKEGGLYSNLFTAHPPFQ 490
            W +L N E+ +++  QLI L  P  + D+E GLY N    + P Q
Sbjct: 1173 WGNLLNEENPHQL-QQLIRL--PGQQYDEESGLYYNRHRYYDPLQ 1214

>A1AT_RAT (P17475) Alpha-1-antiproteinase precursor (Alpha-1-antitrypsin)|
           (Alpha-1-proteinase inhibitor)
          Length = 411

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 317 ACMKRLYGLAAAGIRLRGSTMATALP*SVPPQVKF 213
           A  K +  L   G    G+T+  A+P S+PPQVKF
Sbjct: 350 AVHKAVLTLDERGTEAAGATVVEAVPMSLPPQVKF 384


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,747,450
Number of Sequences: 219361
Number of extensions: 2362518
Number of successful extensions: 5843
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5843
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7479594804
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)