ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal8d04 |
|---|---|
| Clone Library Name | barley_pub |
>JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone demethylation| protein 2C (EC 1.14.11.-) (Jumonji domain-containing protein 1C) Length = 2350 Score = 38.9 bits (89), Expect = 0.015 Identities = 27/81 (33%), Positives = 32/81 (39%) Frame = -1 Query: 518 HASISLSLHPLAMHHSQHTASLMVPTHLLQLKVTHRRQLKATHRQVTRQQVTPRPRAVHT 339 H S LS HP ++H S H L TH L L + Q + P Sbjct: 547 HISPFLSQHPFSLHSSSHRTCLNPGTHHPAL-TPGPHLLAGSTSQTPLPTINTHPLTSGP 605 Query: 338 LHPVRIPHLVPTPLRRATTES 276 HPV PHL+PT L T S Sbjct: 606 HHPVHHPHLLPTVLPGVPTAS 626
>JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone demethylation| protein 2C (EC 1.14.11.-) (Jumonji domain-containing protein 1C) (Thyroid receptor-interacting protein 8) (TRIP-8) Length = 2540 Score = 37.0 bits (84), Expect = 0.055 Identities = 30/87 (34%), Positives = 32/87 (36%), Gaps = 6/87 (6%) Frame = -1 Query: 518 HASISLSLHPLAMHHSQHTASLMVPTHLLQLKVTHRRQLKATHRQVTRQQVTPRPRA-VH 342 H S LS HP +H S H L TH H A H TP P H Sbjct: 728 HISPFLSQHPFPLHSSSHRTCLNPGTH-------HPALTPAPHLLAGSSSQTPLPTINTH 780 Query: 341 TL-----HPVRIPHLVPTPLRRATTES 276 L H V PHL+PT L T S Sbjct: 781 PLTSGPHHAVHHPHLLPTVLPGVPTAS 807
>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 34.3 bits (77), Expect = 0.36 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -2 Query: 397 LPTGRLPASRLPPGPGQFIPSTRCVSPTW 311 LP+ PA+R PPGP F+P R + W Sbjct: 912 LPSPAYPAARPPPGPAPFVPRERAAADRW 940
>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 34.3 bits (77), Expect = 0.36 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -2 Query: 397 LPTGRLPASRLPPGPGQFIPSTRCVSPTW 311 LP+ PA+R PPGP F+P R + W Sbjct: 912 LPSPAYPAARPPPGPAPFVPRERAAADRW 940
>HN_PI3HX (P12566) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 33.9 bits (76), Expect = 0.47 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +1 Query: 169 TLTSPIYHYNKSYCLHVHDTSVASPRNITPIVART 273 T TS I HYNK YC H+ + + S P++ +T Sbjct: 531 TTTSCITHYNKGYCFHIVEINHKSSNTFQPMLFKT 565
>HN_PI3HT (P12562) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 33.9 bits (76), Expect = 0.47 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +1 Query: 169 TLTSPIYHYNKSYCLHVHDTSVASPRNITPIVART 273 T TS I HYNK YC H+ + + S P++ +T Sbjct: 531 TTTSCITHYNKGYCFHIVEINHKSSNTFQPMLFKT 565
>HN_PI3HW (P12565) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 33.5 bits (75), Expect = 0.61 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +1 Query: 169 TLTSPIYHYNKSYCLHVHDTSVASPRNITPIVART 273 T TS I HYNK YC H+ + + S P++ +T Sbjct: 531 TTTSCITHYNKGYCFHIVEINQKSLNTFQPMLFKT 565
>HN_PI3HV (P12564) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 33.1 bits (74), Expect = 0.80 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +1 Query: 169 TLTSPIYHYNKSYCLHVHDTSVASPRNITPIVART 273 T TS I HYNK YC H+ + + S P++ +T Sbjct: 531 TTTSCITHYNKGYCFHIVEINHKSLNTFQPMLFKT 565
>HN_PI3HU (P12563) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 32.3 bits (72), Expect = 1.4 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +1 Query: 169 TLTSPIYHYNKSYCLHVHDTSVASPRNITPIVART 273 T TS I HYNK YC H+ + + S P++ +T Sbjct: 531 TTTSCITHYNKGYCFHIVEINHKSLDTFQPMLFKT 565
>HN_PI3HA (P12561) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 32.3 bits (72), Expect = 1.4 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +1 Query: 169 TLTSPIYHYNKSYCLHVHDTSVASPRNITPIVART 273 T TS I HYNK YC H+ + + S P++ +T Sbjct: 531 TTTSCITHYNKGYCFHIVEINHKSLDTFQPMLFKT 565
>HN_PI3H4 (P08492) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 32.3 bits (72), Expect = 1.4 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +1 Query: 169 TLTSPIYHYNKSYCLHVHDTSVASPRNITPIVART 273 T TS I HYNK YC H+ + + S P++ +T Sbjct: 531 TTTSCITHYNKGYCFHIVEINHKSLDTFQPMLFKT 565
>EMSY_HUMAN (Q7Z589) Protein EMSY| Length = 1322 Score = 31.2 bits (69), Expect = 3.0 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 8/89 (8%) Frame = -1 Query: 503 LSLHPLAMHHSQHTASLMVPTHLLQLKVTHRRQLKATHRQVT---RQQVTPRPRAVHTLH 333 L + L ++ ++ + LQ K+ QL H+++T ++Q P+P HT H Sbjct: 964 LQVKTLQCFQTKQKQTIHLQADQLQHKLPQMPQLSIRHQKLTPLQQEQAQPKPDVQHTQH 1023 Query: 332 PV-----RIPHLVPTPLRRATTESKVRAT 261 P+ ++P L+ P + V+ T Sbjct: 1024 PMVAKDRQLPTLMAQPPQTVVQVLAVKTT 1052
>BDBC_BACCR (Q81HM5) Probable disulfide formation protein C (Disulfide| oxidoreductase C) (Thiol-disulfide oxidoreductase C) Length = 139 Score = 30.8 bits (68), Expect = 4.0 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +1 Query: 361 GVTCWRVTCRWVALSWRRWVTLSWRRWVGTIRLAVC 468 G C RV C ++W +VT+ + +G I +AVC Sbjct: 96 GAACGRVPCTGEYINWFGFVTIPFLALIGFITIAVC 131
>BDBC1_BACC1 (P61776) Probable disulfide formation protein C 1 (Disulfide| oxidoreductase C 1) (Thiol-disulfide oxidoreductase C 1) Length = 139 Score = 30.8 bits (68), Expect = 4.0 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +1 Query: 361 GVTCWRVTCRWVALSWRRWVTLSWRRWVGTIRLAVC 468 G C RV C ++W +VT+ + +G I +AVC Sbjct: 96 GAACGRVPCTGEYINWFGFVTIPFLALIGFITIAVC 131
>BDBC1_BACAN (Q81UU9) Probable disulfide formation protein C 1 (Disulfide| oxidoreductase C 1) (Thiol-disulfide oxidoreductase C 1) Length = 139 Score = 30.8 bits (68), Expect = 4.0 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +1 Query: 361 GVTCWRVTCRWVALSWRRWVTLSWRRWVGTIRLAVC 468 G C RV C ++W +VT+ + +G I +AVC Sbjct: 96 GAACGRVPCTGEYINWFGFVTIPFLALIGFITIAVC 131
>HN_PI1HW (P16071) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 575 Score = 30.8 bits (68), Expect = 4.0 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +1 Query: 169 TLTSPIYHYNKSYCLHVHDTSVASPRNITPIVART 273 T TS I H+ K YC H+ + + S + P++ +T Sbjct: 531 TTTSCITHFGKGYCFHIVEINQTSLNTLQPMLFKT 565
>HN_SENDZ (P04853) Hemagglutinin-neuraminidase (EC 3.2.1.18) (HN protein)| Length = 575 Score = 30.4 bits (67), Expect = 5.2 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +1 Query: 169 TLTSPIYHYNKSYCLHVHDTSVASPRNITPIVART 273 T TS I H+ K YC H+ + + S + P++ +T Sbjct: 531 TTTSCITHFGKGYCFHIIEINQKSLNTLQPMLFKT 565
>HN_SENDO (Q88261) Hemagglutinin-neuraminidase (EC 3.2.1.18) (HN protein)| (HANA protein) Length = 575 Score = 30.4 bits (67), Expect = 5.2 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +1 Query: 169 TLTSPIYHYNKSYCLHVHDTSVASPRNITPIVART 273 T TS I H+ K YC H+ + + S + P++ +T Sbjct: 531 TTTSCITHFGKGYCFHIIEINQKSLNTLQPMLFKT 565
>HN_SENDH (P03425) Hemagglutinin-neuraminidase (EC 3.2.1.18) (HN protein)| Length = 576 Score = 30.4 bits (67), Expect = 5.2 Identities = 11/36 (30%), Positives = 22/36 (61%) Frame = +1 Query: 166 STLTSPIYHYNKSYCLHVHDTSVASPRNITPIVART 273 +T++S I H+ K YC H+ + + S + P++ +T Sbjct: 531 TTISSCITHFGKGYCFHIIEINQKSLNTLQPMLFKT 566
>HN_SENDF (P19758) Hemagglutinin-neuraminidase (EC 3.2.1.18) (HN protein)| Length = 575 Score = 30.4 bits (67), Expect = 5.2 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +1 Query: 169 TLTSPIYHYNKSYCLHVHDTSVASPRNITPIVART 273 T TS I H+ K YC H+ + + S + P++ +T Sbjct: 531 TTTSCITHFGKGYCFHIIEINQKSLNTLQPMLFKT 565
>HN_SENDA (Q783Y1) Hemagglutinin-neuraminidase (EC 3.2.1.18) (HN protein)| Length = 575 Score = 30.4 bits (67), Expect = 5.2 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +1 Query: 169 TLTSPIYHYNKSYCLHVHDTSVASPRNITPIVART 273 T TS I H+ K YC H+ + + S + P++ +T Sbjct: 531 TTTSCITHFGKGYCFHIIEINQKSLNTLQPMLFKT 565
>P2RY4_XENLA (P79928) P2Y purinoceptor 4 (P2Y4) (P2Y purinoceptor 8) (P2Y8)| Length = 537 Score = 30.0 bits (66), Expect = 6.7 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -1 Query: 389 RQVTRQQVTPRPRAVHTLHPVRIPHLVPTPL 297 R V R+ P R +HT HP PH+ PL Sbjct: 330 RTVRRRSSVPNRRCMHTNHPQTEPHMTAGPL 360
>HN_PI3B (P06167) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 30.0 bits (66), Expect = 6.7 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +1 Query: 169 TLTSPIYHYNKSYCLHVHDTSVASPRNITPIVART 273 T T+ I HY+K YC H+ + + S P++ +T Sbjct: 531 TTTNCITHYDKGYCFHIVEINHRSLNTFQPMLFKT 565
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 30.0 bits (66), Expect = 6.7 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = +1 Query: 103 GSPPRGDPNAVPNSAPGPIPTSTLTSP 183 G PPRG P P PGP+P + P Sbjct: 350 GMPPRGPPFGSPMGHPGPMPPHGMRGP 376
>TLR9_MOUSE (Q9EQU3) Toll-like receptor 9 precursor (CD289 antigen)| Length = 1032 Score = 30.0 bits (66), Expect = 6.7 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -1 Query: 554 HSPCKCLQCSRCHASISLSLHPLAMHHSQHTASLMV 447 H+P C++C + SL LHP HH H L++ Sbjct: 260 HAPNPCIECGQK----SLHLHPETFHHLSHLEGLVL 291
>CF136_HUMAN (Q5SQH8) Protein C6orf136| Length = 315 Score = 30.0 bits (66), Expect = 6.7 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 1/58 (1%) Frame = -2 Query: 460 PALWCXXXXXXXXXXXXXXXRLPTGRLPASRLPPGPGQFIPSTRCVSPTW-FLPPSAG 290 P LW LP RLP RLP P +P + +S W LPP G Sbjct: 35 PPLWPHSTTTTSPSSPLFWSPLPP-RLPTQRLPQVPPLPLPQIQALSSAWVVLPPGKG 91
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 29.6 bits (65), Expect = 8.8 Identities = 17/38 (44%), Positives = 21/38 (55%) Frame = +1 Query: 73 PMTTKKKSRDGSPPRGDPNAVPNSAPGPIPTSTLTSPI 186 P TT G P P AVP++APGP P ST +S + Sbjct: 132 PPTTGAPPGPGPTPTPPP-AVPSTAPGPPPPSTPSSGV 168
>DOCK4_MOUSE (P59764) Dedicator of cytokinesis protein 4| Length = 1978 Score = 29.6 bits (65), Expect = 8.8 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%) Frame = +1 Query: 34 SXRNYRCNAVHS*PMTTKKKSR-----DGSPPRGDPN-AVPNSAPGPIPTS 168 S R+ C+A++ P+ ++ DG+ PR DPN + P A P P+S Sbjct: 1726 SPRDRPCSAIYPTPVEPSQRMLFNHIGDGALPRSDPNLSAPEKAVNPTPSS 1776
>TSC10_NEUCR (Q7RZR2) 3-ketodihydrosphingosine reductase tsc-10 (EC 1.1.1.102)| (3-dehydrosphinganine reductase) (KDS reductase) Length = 969 Score = 29.6 bits (65), Expect = 8.8 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Frame = -2 Query: 388 GRLPASRLPPGPGQ---FIPSTRCVSPTWFLPPSAGLLRKVKYVQQSG*YSLVRQQ 230 G++PASRL PGPG P+T S T P S L+R + VQQ + QQ Sbjct: 404 GQVPASRLTPGPGPTKVTKPTTPARSRTGASPHS--LVRNSQLVQQLAAHEAQLQQ 457 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,503,949 Number of Sequences: 219361 Number of extensions: 2039254 Number of successful extensions: 7963 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 6862 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7858 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
