ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal8d03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 1033 bits (521), Expect = 0.0 Identities = 594/607 (97%), Gaps = 10/607 (1%) Strand = Plus / Minus Query: 3 tatttagagatatat-aanaaaa--tgccc-gcaatcgcttggatgcgatgcggacttag 58 ||||||||||||||| || |||| ||||| ||||||||||||||||||||||||||||| Sbjct: 1684 tatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag 1625 Query: 59 -gtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 117 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1624 tgtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 1565 Query: 118 t-cgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 176 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1564 ttcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 1505 Query: 177 ca-cgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgg 235 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1504 catcgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgg 1445 Query: 236 gtgt-gtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 294 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1444 gtgttgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 1385 Query: 295 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1384 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 1325 Query: 355 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1324 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 1265 Query: 415 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1264 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 1205 Query: 475 cggtagagccgacccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccg 534 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1204 cggtagagccgacccacttgcgcacctca-tcgtcgtacacccgagcacgcagagcaccg 1146 Query: 535 aaaaagtcaatggattgtcctggggaaggtgtcgacgatcttgacgacagactcgtcact 594 ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct: 1145 aaaaagtcaatggattgtcct-gggaaggtgtcgacgatctttacgacagactcgtcaca 1087 Query: 595 gacattg 601 ||||||| Sbjct: 1086 gacattg 1080
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 829 bits (418), Expect = 0.0 Identities = 542/578 (93%), Gaps = 9/578 (1%) Strand = Plus / Minus Query: 30 gcaatcgcttggatgcgatgcgg-acttaggta-----ggtaaaacatcagatattaaaa 83 ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| Sbjct: 724 gcaatcgcttggatgcgatgcggtacttaggtacaaaggataaaacatcagatattaaat 665 Query: 84 gtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgta 143 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 664 -tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaa 606 Query: 144 gttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcc 203 |||||||||| | ||||||||||| ||| |||| || |||||||||||||||||||| || Sbjct: 605 gttcttggcagtctggtcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccc 546 Query: 204 tttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtag 263 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 545 tttacctcctcctatgcagcaagagatggtgggtgtgtatggagaatgttctaaccgtag 486 Query: 264 aaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtag 323 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 485 aaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtag 426 Query: 324 gtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtac 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 gtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtac 366 Query: 384 tctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgag 443 |||||||||||||| |||||||||||||||||||| |||||||| || |||||||||||| Sbjct: 365 tctagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtcccgcgag 306 Query: 444 ttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctca 503 ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct: 305 ttcaccagcttcttgccaatgttctcgataccggtagaggtcacccacttgcgcacctc- 247 Query: 504 ttcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggggaagg 563 |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 246 gtcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatggattgtcct-gggaagg 188 Query: 564 tgtcgacgatcttgacgacagactcgtcactgacattg 601 ||||||||||||||||||| |||||||| ||||||||| Sbjct: 187 tgtcgacgatcttgacgacggactcgtcgctgacattg 150
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 829 bits (418), Expect = 0.0 Identities = 542/578 (93%), Gaps = 9/578 (1%) Strand = Plus / Minus Query: 30 gcaatcgcttggatgcgatgcgg-acttaggta-----ggtaaaacatcagatattaaaa 83 ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| Sbjct: 1574 gcaatcgcttggatgcgatgcggtacttaggtacaaaggataaaacatcagatattaaat 1515 Query: 84 gtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgta 143 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 1514 -tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaa 1456 Query: 144 gttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcc 203 |||||||||| | ||||||||||| ||| |||| || |||||||||||||||||||| || Sbjct: 1455 gttcttggcagtctggtcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccc 1396 Query: 204 tttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtag 263 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1395 tttacctcctcctatgcagcaagagatggtgggtgtgtatggagaatgttctaaccgtag 1336 Query: 264 aaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtag 323 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1335 aaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtag 1276 Query: 324 gtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtac 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1275 gtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtac 1216 Query: 384 tctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgag 443 |||||||||||||| |||||||||||||||||||| |||||||| || |||||||||||| Sbjct: 1215 tctagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtcccgcgag 1156 Query: 444 ttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctca 503 ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct: 1155 ttcaccagcttcttgccaatgttctcgataccggtagaggtcacccacttgcgcacctc- 1097 Query: 504 ttcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggggaagg 563 |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1096 gtcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatggattgtcct-gggaagg 1038 Query: 564 tgtcgacgatcttgacgacagactcgtcactgacattg 601 ||||||||||||||||||| |||||||| ||||||||| Sbjct: 1037 tgtcgacgatcttgacgacggactcgtcgctgacattg 1000
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 656 bits (331), Expect = 0.0 Identities = 473/517 (91%), Gaps = 4/517 (0%) Strand = Plus / Minus Query: 81 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 140 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1527 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1468 Query: 141 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 200 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1467 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1408 Query: 201 tcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccg 260 ||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||| Sbjct: 1407 tcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttctaaccg 1350 Query: 261 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 320 |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| Sbjct: 1349 tagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggctcatg 1290 Query: 321 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 380 || ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 1289 taagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtggccg 1230 Query: 381 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 440 ||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||||||| Sbjct: 1229 tactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtcccgc 1170 Query: 441 gagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacc 500 |||||||||||||||||||| |||||||| |||||||| || ||||||||||||||| Sbjct: 1169 gagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcgcacc 1110 Query: 501 tcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggga 560 ||| ||||||||||||||||||||||||||||||| ||||| ||||| |||||| |||| Sbjct: 1109 tca-acgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcct-ggga 1052 Query: 561 aggtgtcgacgatcttgacgacagactcgtcactgac 597 | ||||||||||||||||||||||||||||| ||||| Sbjct: 1051 angtgtcgacgatcttgacgacagactcgtcgctgac 1015
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 650 bits (328), Expect = 0.0 Identities = 335/336 (99%), Gaps = 1/336 (0%) Strand = Plus / Minus Query: 207 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296 Query: 267 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236 Query: 327 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176 Query: 387 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 7116 Query: 447 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcattc 506 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 7115 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctca-tc 7057 Query: 507 gtcgtacacccgagcacgcagagcaccgaaaaagtc 542 |||||||||||||||||||||||||||||||||||| Sbjct: 7056 gtcgtacacccgagcacgcagagcaccgaaaaagtc 7021 Score = 367 bits (185), Expect = 3e-98 Identities = 210/215 (97%), Gaps = 4/215 (1%) Strand = Plus / Minus Query: 1 tatatttagagatatat-aanaaaa--tgccc-gcaatcgcttggatgcgatgcggactt 56 ||||||||||||||||| || |||| ||||| ||||||||||||||||||||||||||| Sbjct: 7737 tatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggactt 7678 Query: 57 aggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgcc 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7677 aggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgcc 7618 Query: 117 gtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7617 gtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 7558 Query: 177 cacgggcaaagtaccttgctgtgctcctttacctc 211 ||||||||||||||||||||||||||||||||||| Sbjct: 7557 cacgggcaaagtaccttgctgtgctcctttacctc 7523 Score = 103 bits (52), Expect = 7e-19 Identities = 59/60 (98%), Gaps = 1/60 (1%) Strand = Plus / Minus Query: 542 caatggattgtcctggggaaggtgtcgacgatcttgacgacagactcgtcactgacattg 601 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 6880 caatggattgtcctggg-aaggtgtcgacgatcttgacgacagactcgtcactgacattg 6822 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 333 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 392 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 393 ttctcgactgtcatctttggctgctcgaa 421 ||||| | |||||||| ||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873 Score = 61.9 bits (31), Expect = 2e-06 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand = Plus / Minus Query: 482 gccgacccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagt 541 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||| Sbjct: 3812 gccgacccacttgcgcacctc-gtcgtcgtacacccgtgcccgcagcgcgccgaagaagt 3754 Query: 542 caatgga 548 | ||||| Sbjct: 3753 cgatgga 3747
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 636 bits (321), Expect = e-179 Identities = 341/345 (98%), Gaps = 2/345 (0%) Strand = Plus / Minus Query: 257 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108 Query: 317 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048 Query: 377 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988 Query: 437 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 928 Query: 497 cacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctg 556 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 927 cacctca-tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcct- 870 Query: 557 gggaaggtgtcgacgatcttgacgacagactcgtcactgacattg 601 |||||||||||||||||||| |||||||||||||||| ||||||| Sbjct: 869 gggaaggtgtcgacgatctttacgacagactcgtcacagacattg 825 Score = 363 bits (183), Expect = 4e-97 Identities = 208/213 (97%), Gaps = 4/213 (1%) Strand = Plus / Minus Query: 1 tatatttagagatatat-aanaaaa--tgccc-gcaatcgcttggatgcgatgcggactt 56 ||||||||||||||||| || |||| ||||| ||||||||||||||||||||||||||| Sbjct: 1377 tatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggactt 1318 Query: 57 aggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgcc 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1317 aggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgcc 1258 Query: 117 gtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1257 gtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 1198 Query: 177 cacgggcaaagtaccttgctgtgctcctttacc 209 ||||||||||||||||||||||||||||||||| Sbjct: 1197 cacgggcaaagtaccttgctgtgctcctttacc 1165
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 507 bits (256), Expect = e-140 Identities = 296/308 (96%), Gaps = 1/308 (0%) Strand = Plus / Minus Query: 235 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 294 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249 Query: 295 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189 Query: 355 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129 Query: 415 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 474 |||| |||||||| || ||||||||||||||||| ||| ||||||||||||||||||| | Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcacaagcttcttgccaatgttctcgatac 69 Query: 475 cggtagagccgacccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccg 534 |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 68 cggtagaggtcacccacttgcgcacctc-gtcgtcgtacacccgagcacgcagagcaccg 10 Query: 535 aaaaagtc 542 |||||||| Sbjct: 9 aaaaagtc 2
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 438 bits (221), Expect = e-120 Identities = 313/341 (91%), Gaps = 2/341 (0%) Strand = Plus / Minus Query: 257 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 316 |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304 Query: 317 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 376 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244 Query: 377 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 436 |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184 Query: 437 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 496 |||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| Sbjct: 1183 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1124 Query: 497 cacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctg 556 |||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct: 1123 cacctc-gtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcct- 1066 Query: 557 gggaaggtgtcgacgatcttgacgacagactcgtcactgac 597 ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1065 gggaaggtgtcgacgatcttgacgacagactcgtcgctgac 1025 Score = 176 bits (89), Expect = 5e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 81 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 140 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 141 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 200 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 201 tcctttacc 209 ||||||||| Sbjct: 1369 tcctttacc 1361
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 150 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 206 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395 Query: 207 acctcctcct 216 ||||||||| Sbjct: 1394 ccctcctcct 1385 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 256 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 315 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251 Query: 316 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 375 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191 Query: 376 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 435 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1131 Query: 436 cccgcgagttcaccagcctcttgccaatgttctc 469 ||| |||||||||||||||||||||||||||||| Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097 Score = 71.9 bits (36), Expect = 2e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 486 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 545 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 1080 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 1022 Query: 546 ggattgtcctggggaaggtgtcgacgatcttgacga 581 |||||| |||||| ||| |||||||||||||||||| Sbjct: 1021 ggattggcctggg-aagctgtcgacgatcttgacga 987
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 150 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 206 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433 Query: 207 acctcctcct 216 ||||||||| Sbjct: 1432 ccctcctcct 1423 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 256 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 315 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289 Query: 316 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 375 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229 Query: 376 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 435 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1169 Query: 436 cccgcgagttcaccagcctcttgccaatgttctc 469 ||| |||||||||||||||||||||||||||||| Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135 Score = 71.9 bits (36), Expect = 2e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 486 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 545 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 1118 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 1060 Query: 546 ggattgtcctggggaaggtgtcgacgatcttgacga 581 |||||| |||||| ||| |||||||||||||||||| Sbjct: 1059 ggattggcctggg-aagctgtcgacgatcttgacga 1025
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 150 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 206 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432 Query: 207 acctcctcct 216 ||||||||| Sbjct: 1431 ccctcctcct 1422 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 256 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 315 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288 Query: 316 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 375 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228 Query: 376 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 435 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1168 Query: 436 cccgcgagttcaccagcctcttgccaatgttctc 469 ||| |||||||||||||||||||||||||||||| Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134 Score = 71.9 bits (36), Expect = 2e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 486 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 545 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 1117 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 1059 Query: 546 ggattgtcctggggaaggtgtcgacgatcttgacga 581 |||||| |||||| ||| |||||||||||||||||| Sbjct: 1058 ggattggcctggg-aagctgtcgacgatcttgacga 1024
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 150 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 206 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216 Query: 207 acctcctcct 216 ||||||||| Sbjct: 1215 ccctcctcct 1206 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 256 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 315 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072 Query: 316 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 375 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012 Query: 376 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 435 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 952 Query: 436 cccgcgagttcaccagcctcttgccaatgttctc 469 ||| |||||||||||||||||||||||||||||| Sbjct: 951 ccctcgagttcaccagcctcttgccaatgttctc 918 Score = 71.9 bits (36), Expect = 2e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 486 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 545 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 901 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 843 Query: 546 ggattgtcctggggaaggtgtcgacgatcttgacga 581 |||||| |||||| ||| |||||||||||||||||| Sbjct: 842 ggattggcctggg-aagctgtcgacgatcttgacga 808
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 150 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 206 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437 Query: 207 acctcctcct 216 ||||||||| Sbjct: 1436 ccctcctcct 1427 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 256 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 315 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293 Query: 316 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 375 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233 Query: 376 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 435 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1173 Query: 436 cccgcgagttcaccagcctcttgccaatgttctc 469 ||| |||||||||||||||||||||||||||||| Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139 Score = 71.9 bits (36), Expect = 2e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 486 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 545 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 1122 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 1064 Query: 546 ggattgtcctggggaaggtgtcgacgatcttgacga 581 |||||| |||||| ||| |||||||||||||||||| Sbjct: 1063 ggattggcctggg-aagctgtcgacgatcttgacga 1029
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 253 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 312 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365 Query: 313 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 372 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425 Query: 373 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 432 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 108485 Query: 433 cgtcccgcgagttcaccagcctcttgccaatgttctc 469 | |||| |||||||||||||||||||||||||||||| Sbjct: 108486 cctccctcgagttcaccagcctcttgccaatgttctc 108522 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 108 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 167 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 168 accttccggcacggg 182 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127 Score = 44.1 bits (22), Expect = 0.52 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Plus Query: 544 atggattgtcctggggaaggtgtcgacgatcttgacga 581 |||||||| |||||| ||| |||||||||||||||||| Sbjct: 108688 atggattggcctggg-aagctgtcgacgatcttgacga 108724 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 441 gagttcaccagcctcttgccaatgttctc 469 ||||||||||||||| |||| |||||||| Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 253 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 312 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242 Query: 313 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 372 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302 Query: 373 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 432 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 30362 Query: 433 cgtcccgcgagttcaccagcctcttgccaatgttctc 469 | |||| |||||||||||||||||||||||||||||| Sbjct: 30363 cctccctcgagttcaccagcctcttgccaatgttctc 30399 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 108 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 167 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 168 accttccggcacggg 182 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004 Score = 44.1 bits (22), Expect = 0.52 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Plus Query: 544 atggattgtcctggggaaggtgtcgacgatcttgacga 581 |||||||| |||||| ||| |||||||||||||||||| Sbjct: 30565 atggattggcctggg-aagctgtcgacgatcttgacga 30601 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 441 gagttcaccagcctcttgccaatgttctc 469 ||||||||||||||| |||| |||||||| Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 256 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 315 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257 Query: 316 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 375 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197 Query: 376 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 435 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1137 Query: 436 cccgcgagttcaccagcctcttgccaatgttctc 469 ||| |||||||||||||||||||||||||||||| Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103 Score = 71.9 bits (36), Expect = 2e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 486 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 545 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 1086 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 1028 Query: 546 ggattgtcctggggaaggtgtcgacgatcttgacga 581 |||||| |||||| ||| |||||||||||||||||| Sbjct: 1027 ggattggcctggg-aagctgtcgacgatcttgacga 993
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||||||||||||||||||| |||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 258 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 317 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250 Query: 318 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 377 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190 Query: 378 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 437 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130 Query: 438 cgcgagttcaccagcctcttgccaatgttctc 469 | |||||||||||||||||||||||||||||| Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctc 1098 Score = 71.9 bits (36), Expect = 2e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 486 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 545 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 1081 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 1023 Query: 546 ggattgtcctggggaaggtgtcgacgatcttgacga 581 |||||| |||||| ||| |||||||||||||||||| Sbjct: 1022 ggattggcctggg-aagctgtcgacgatcttgacga 988
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 253 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 312 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504 Query: 313 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 372 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564 Query: 373 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 432 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28303624 Query: 433 cgtcccgcgagttcaccagcctcttgccaatgttctc 469 | |||| |||||||||||||||||||||||||||||| Sbjct: 28303625 cctccctcgagttcaccagcctcttgccaatgttctc 28303661 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 108 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 167 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 168 accttccggcacggg 182 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266 Score = 44.1 bits (22), Expect = 0.52 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Plus Query: 544 atggattgtcctggggaaggtgtcgacgatcttgacga 581 |||||||| |||||| ||| |||||||||||||||||| Sbjct: 28303827 atggattggcctggg-aagctgtcgacgatcttgacga 28303863 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 441 gagttcaccagcctcttgccaatgttctc 469 ||||||||||||||| |||| |||||||| Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 253 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 312 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953 Query: 313 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 372 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013 Query: 373 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 432 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28286073 Query: 433 cgtcccgcgagttcaccagcctcttgccaatgttctc 469 | |||| |||||||||||||||||||||||||||||| Sbjct: 28286074 cctccctcgagttcaccagcctcttgccaatgttctc 28286110 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 108 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 167 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 168 accttccggcacggg 182 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715 Score = 44.1 bits (22), Expect = 0.52 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Plus Query: 544 atggattgtcctggggaaggtgtcgacgatcttgacga 581 |||||||| |||||| ||| |||||||||||||||||| Sbjct: 28286276 atggattggcctggg-aagctgtcgacgatcttgacga 28286312 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 441 gagttcaccagcctcttgccaatgttctc 469 ||||||||||||||| |||| |||||||| Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||||||||||||||||||| |||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 258 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 317 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285 Query: 318 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 377 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225 Query: 378 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 437 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165 Query: 438 cgcgagttcaccagcctcttgccaatgttctc 469 | |||||||||||||||||||||||||||||| Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctc 1133 Score = 71.9 bits (36), Expect = 2e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 486 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 545 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 1116 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 1058 Query: 546 ggattgtcctggggaaggtgtcgacgatcttgacga 581 |||||| |||||| ||| |||||||||||||||||| Sbjct: 1057 ggattggcctggg-aagctgtcgacgatcttgacga 1023
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 125 bits (63), Expect = 2e-25 Identities = 171/207 (82%) Strand = Plus / Minus Query: 254 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 313 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948 Query: 314 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 373 ||||| ||| |||| || |||||||| | ||| || || ||||||||||| || ||||| Sbjct: 947 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888 Query: 374 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 433 || |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 887 gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828 Query: 434 gtcccgcgagttcaccagcctcttgcc 460 ||| |||||||||||||||||||||| Sbjct: 827 ctccagcgagttcaccagcctcttgcc 801 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 100 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 159 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 160 tcggtgcaaccttc 173 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076 Score = 61.9 bits (31), Expect = 2e-06 Identities = 50/55 (90%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 529 gcaccgaaaaagtcaatggattgtcctggggaaggtgtcgacgatcttgacgaca 583 |||||||| |||||||||||||| || ||||||||||||||||| ||||| |||| Sbjct: 733 gcaccgaagaagtcaatggattggcc-ggggaaggtgtcgacgagcttgatgaca 680
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 256 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 315 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506 Query: 316 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 375 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446 Query: 376 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 435 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 386 Query: 436 cccgcgagttcaccagcctcttgccaatgttctc 469 ||| |||||||||||||||||||||||||||||| Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352 Score = 71.9 bits (36), Expect = 2e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 486 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 545 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 335 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 277 Query: 546 ggattgtcctggggaaggtgtcgacgatcttgacga 581 |||||| |||||| ||| |||||||||||||||||| Sbjct: 276 ggattggcctggg-aagctgtcgacgatcttgacga 242
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 256 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 315 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300 Query: 316 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 375 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240 Query: 376 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 435 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1180 Query: 436 cccgcgagttcaccagcctcttgccaatgttctc 469 ||| |||||||||||||||||||||||||||||| Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146 Score = 119 bits (60), Expect = 1e-23 Identities = 114/130 (87%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 150 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 206 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444 Query: 207 acctcctcct 216 ||||||||| Sbjct: 1443 ccctcctcct 1434 Score = 71.9 bits (36), Expect = 2e-09 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 486 acccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagtcaat 545 ||||||||||||||||| | ||||||| || || ||||| ||||| ||||| || || || Sbjct: 1129 acccacttgcgcacctcgt-cgtcgtaaacacgggcacgaagagcgccgaagaaatcgat 1071 Query: 546 ggattgtcctggggaaggtgtcgacgatcttgacga 581 |||||| |||||| ||| |||||||||||||||||| Sbjct: 1070 ggattggcctggg-aagctgtcgacgatcttgacga 1036
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 96 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 155 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 156 ttggtcggtgcaaccttccggcacgggca 184 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 119 bits (60), Expect = 1e-23 Identities = 165/200 (82%) Strand = Plus / Minus Query: 261 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 320 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 321 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 380 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 381 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 440 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015 Query: 441 gagttcaccagcctcttgcc 460 |||||||||||||||||||| Sbjct: 1014 gagttcaccagcctcttgcc 995 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 100 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 159 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 160 tcggtgcaaccttc 173 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232 Score = 61.9 bits (31), Expect = 2e-06 Identities = 50/55 (90%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 529 gcaccgaaaaagtcaatggattgtcctggggaaggtgtcgacgatcttgacgaca 583 |||||||| |||||||||||||| || ||||||||||||||||| ||||| |||| Sbjct: 927 gcaccgaagaagtcaatggattggcc-ggggaaggtgtcgacgagcttgatgaca 874
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 103 bits (52), Expect = 7e-19 Identities = 166/204 (81%) Strand = Plus / Minus Query: 254 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 313 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249 Query: 314 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 373 ||||| ||| |||| || |||||||| | ||| || || ||||| ||||| || ||||| Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189 Query: 374 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 433 | |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129 Query: 434 gtcccgcgagttcaccagcctctt 457 ||| ||||||||||||||||||| Sbjct: 1128 ctccagcgagttcaccagcctctt 1105 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 100 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 159 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 160 tcggtgcaaccttc 173 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377 Score = 61.9 bits (31), Expect = 2e-06 Identities = 50/55 (90%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 529 gcaccgaaaaagtcaatggattgtcctggggaaggtgtcgacgatcttgacgaca 583 |||||||| |||||||||||||| || ||||||||||||||||| ||||| |||| Sbjct: 1034 gcaccgaagaagtcaatggattggcc-ggggaaggtgtcgacgagcttgatgaca 981
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 103 bits (52), Expect = 7e-19 Identities = 176/216 (81%), Gaps = 1/216 (0%) Strand = Plus / Minus Query: 333 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 392 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 393 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 452 ||||||| |||||||| ||||| ||||| ||| ||||| |||| ||||| || ||| Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123 Query: 453 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcattcgtcgta 512 | |||| |||||||||| ||| | ||||||||||||||||||||| |||||||| Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctc-gtcgtcgta 1064 Query: 513 cacccgagcacgcagagcaccgaaaaagtcaatgga 548 |||||| || ||||| || ||||| ||||| ||||| Sbjct: 1063 cacccgcgcccgcagcgcgccgaagaagtcgatgga 1028
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 97.6 bits (49), Expect = 4e-17 Identities = 160/197 (81%) Strand = Plus / Minus Query: 261 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 320 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105 Query: 321 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 380 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045 Query: 381 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 440 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985 Query: 441 gagttcaccagcctctt 457 ||||||||||||||||| Sbjct: 984 gagttcaccagcctctt 968 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 100 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 159 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 160 tcggtgcaaccttc 173 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202 Score = 61.9 bits (31), Expect = 2e-06 Identities = 50/55 (90%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 529 gcaccgaaaaagtcaatggattgtcctggggaaggtgtcgacgatcttgacgaca 583 |||||||| |||||||||||||| || ||||||||||||||||| ||||| |||| Sbjct: 897 gcaccgaagaagtcaatggattggcc-ggggaaggtgtcgacgagcttgatgaca 844
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 262 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 321 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 322 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 381 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 382 actctagcagcttctcgactgtcatctttggctgctcgaa 421 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760 Score = 44.1 bits (22), Expect = 0.52 Identities = 56/66 (84%), Gaps = 1/66 (1%) Strand = Plus / Minus Query: 505 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggggaaggt 564 |||||||| ||||| |||||||| || ||||| ||||| ||||| || || ||| ||||| Sbjct: 677 tcgtcgtagacccgggcacgcagcgcgccgaagaagtcgatggactggccaggg-aaggt 619 Query: 565 gtcgac 570 |||||| Sbjct: 618 gtcgac 613
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 262 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 321 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 322 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 381 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 382 actctagcagcttctcgactgtcatctttggctgctcgaa 421 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 262 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 321 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 322 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 381 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 382 actctagcagcttctcgactgtcatctttggctgctcgaa 421 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 333 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 392 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 393 ttctcgactgtcatctttggctgctcgaa 421 ||||| | |||||||| ||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304 Score = 61.9 bits (31), Expect = 2e-06 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand = Plus / Minus Query: 482 gccgacccacttgcgcacctcattcgtcgtacacccgagcacgcagagcaccgaaaaagt 541 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||| Sbjct: 1243 gccgacccacttgcgcacctc-gtcgtcgtacacccgtgcccgcagcgcgccgaagaagt 1185 Query: 542 caatgga 548 | ||||| Sbjct: 1184 cgatgga 1178
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 1e-11 Identities = 97/116 (83%) Strand = Plus / Minus Query: 279 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 338 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 339 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 394 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 90 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 149 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 150 ggcattttggtcggtgcaaccttccggcacgggca 184 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 56.0 bits (28), Expect = 1e-04 Identities = 106/132 (80%) Strand = Plus / Minus Query: 290 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 349 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 350 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 409 ||| || ||||| ||||| ||||||| |||||||| || ||||| |||| |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 410 tggctgctcgaa 421 ||||||||||| Sbjct: 1243 cggctgctcgaa 1232
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 54.0 bits (27), Expect = 5e-04 Identities = 55/63 (87%), Gaps = 1/63 (1%) Strand = Plus / Minus Query: 505 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggggaaggt 564 ||||||||||| || |||||||| || ||||| ||||||||||| || || ||||||||| Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggcc-ggggaaggt 2665 Query: 565 gtc 567 ||| Sbjct: 2664 gtc 2662
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 525 cagagcaccgaaaaagtcaatggattg 551 ||||||||||||||||||||||||||| Sbjct: 1113 cagagcaccgaaaaagtcaatggattg 1087
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 54.0 bits (27), Expect = 5e-04 Identities = 55/63 (87%), Gaps = 1/63 (1%) Strand = Plus / Minus Query: 505 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggggaaggt 564 ||||||||||| || |||||||| || ||||| ||||||||||| || || ||||||||| Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggcc-ggggaaggt 975 Query: 565 gtc 567 ||| Sbjct: 974 gtc 972
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 46.1 bits (23), Expect = 0.13 Identities = 48/55 (87%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 525 cagagcaccgaaaaagtcaatggattgtcctggggaaggtgtcgacgatcttgac 579 |||||||||||| || ||||| |||||||| |||||| | |||||||||||||| Sbjct: 1126 cagagcaccgaagaaatcaatagattgtcc-agggaagctatcgacgatcttgac 1073
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 44.1 bits (22), Expect = 0.52 Identities = 43/50 (86%) Strand = Plus / Minus Query: 282 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 331 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 catcacccagagctgcctggct 316 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 42.1 bits (21), Expect = 2.1 Identities = 55/65 (84%), Gaps = 1/65 (1%) Strand = Plus / Minus Query: 508 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggggaaggtgtc 567 ||||| |||||||| | || |||||||| || || |||||||| || |||||||||||| Sbjct: 944 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggcc-ggggaaggtgtc 886 Query: 568 gacga 572 ||||| Sbjct: 885 gacga 881
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 557 gggaaggtgtcgacgatcttg 577 ||||||||||||||||||||| Sbjct: 3653 gggaaggtgtcgacgatcttg 3673
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 aaacatcagatattaaaagtg 86 ||||||||||||||||||||| Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 42.1 bits (21), Expect = 2.1 Identities = 55/65 (84%), Gaps = 1/65 (1%) Strand = Plus / Minus Query: 508 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggggaaggtgtc 567 ||||| |||||||| | || |||||||| || || |||||||| || |||||||||||| Sbjct: 945 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggcc-ggggaaggtgtc 887 Query: 568 gacga 572 ||||| Sbjct: 886 gacga 882
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 217 atgcagcaagagatggtgggt 237 ||||||||||||||||||||| Sbjct: 63530 atgcagcaagagatggtgggt 63550
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 333 agctgcacacgcttgacattgtcctgctc 361 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 aaacatcagatattaaaagtg 86 ||||||||||||||||||||| Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 aaacatcagatattaaaagtg 86 ||||||||||||||||||||| Sbjct: 114403 aaacatcagatattaaaagtg 114423
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 cctttacctcctcctatgca 221 |||||||||||||||||||| Sbjct: 46359 cctttacctcctcctatgca 46378
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 catcacccagagctgcctggctca 318 |||| ||||||||||||||||||| Sbjct: 1542 catcgcccagagctgcctggctca 1565
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18, and complete cds Length = 16432 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 cctttacctcctcctatgca 221 |||||||||||||||||||| Sbjct: 1637 cctttacctcctcctatgca 1656
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 40.1 bits (20), Expect = 8.2 Identities = 68/84 (80%) Strand = Plus / Minus Query: 291 ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 350 ||||||||||| ||||| |||| | |||||| ||||||| | || || | |||||| Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287 Query: 351 ttgtcctgctcctggacgagcatg 374 || |||||||||||||| |||||| Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 cctttacctcctcctatgca 221 |||||||||||||||||||| Sbjct: 32945 cctttacctcctcctatgca 32964
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 gtcagcaagctgcacacgct 345 |||||||||||||||||||| Sbjct: 242 gtcagcaagctgcacacgct 223
>emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding protein, RAB7B Length = 1010 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 ttgacgacagactcgtcact 594 |||||||||||||||||||| Sbjct: 289 ttgacgacagactcgtcact 308
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 tcagatattaaaagtggcat 90 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 tcagatattaaaagtggcat 90 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 tcagatattaaaagtggcat 90 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 catcacccagagctgcctggctca 318 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 aaaatgcccgcaatcgcttg 40 |||||||||||||||||||| Sbjct: 11763 aaaatgcccgcaatcgcttg 11744
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 aaaatgcccgcaatcgcttg 40 |||||||||||||||||||| Sbjct: 275638 aaaatgcccgcaatcgcttg 275619
>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12 Length = 349726 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 aaaatgcccgcaatcgcttg 40 |||||||||||||||||||| Sbjct: 244616 aaaatgcccgcaatcgcttg 244597
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 ttgacattgtcctgctcctg 364 |||||||||||||||||||| Sbjct: 126438 ttgacattgtcctgctcctg 126419
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 catcacccagagctgcctggctca 318 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 99 ggtgtaaaggcagctgccgtcgtcgctc 126 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 cctttacctcctcctatgca 221 |||||||||||||||||||| Sbjct: 34662 cctttacctcctcctatgca 34681
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 catcacccagagctgcctggctca 318 |||| ||||||||||||||||||| Sbjct: 1636 catcgcccagagctgcctggctca 1659
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 catcacccagagctgcctggctca 318 |||| ||||||||||||||||||| Sbjct: 2003 catcgcccagagctgcctggctca 2026
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 catcacccagagctgcctggctca 318 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tggcatgcttaaaaggtgta 104 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 ttgacattgtcctgctcctg 364 |||||||||||||||||||| Sbjct: 106960 ttgacattgtcctgctcctg 106979
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 catcacccagagctgcctggctca 318 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 cttgctgtgctcctttacctcctc 214 ||||||| |||||||||||||||| Sbjct: 648 cttgctgggctcctttacctcctc 625
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 cctttacctcctcctatgca 221 |||||||||||||||||||| Sbjct: 27755 cctttacctcctcctatgca 27736
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 70 atcagatattaaaagtggcatgct 93 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,897,374 Number of Sequences: 3902068 Number of extensions: 3897374 Number of successful extensions: 72969 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 72599 Number of HSP's gapped (non-prelim): 288 length of query: 601 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 578 effective length of database: 17,143,297,704 effective search space: 9908826072912 effective search space used: 9908826072912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
