ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal31p15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_482160.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1345 Score = 182 bits (92), Expect = 9e-43 Identities = 182/212 (85%) Strand = Plus / Minus Query: 401 gtttctccctttcttctgtctccttgagtagaaagtccacccagagatctgcaaaggact 460 |||| ||||||||||| ||||| ||||| || ||||||||||| ||||| ||||| |||| Sbjct: 903 gtttttccctttcttccgtctctttgagcaggaagtccacccatagatccgcaaatgact 844 Query: 461 ggttatcctggggtgtatgtgtagatttgcctgctgaatttccaccaacaattcctccaa 520 |||| ||||| | || || |||| |||||||||||||||||| |||||||| ||||||| Sbjct: 843 ggttgtcctgagatgcttgagtaggtttgcctgctgaatttccgccaacaatgcctccaa 784 Query: 521 ctaggcgcccaggaagacccaaaacaccgcggacaacaaccttaccaacattgctctgtg 580 ||| ||| || ||||||||||||||||| ||||||||| |||| ||| |||| || |||| Sbjct: 783 ctaagcgtcctggaagacccaaaacaccccggacaacacccttgccagcattactttgtg 724 Query: 581 cagaaccgattctttgcttgtcctcctcagag 612 || |||| || ||||||||||| ||||||||| Sbjct: 723 caaaaccaatcctttgcttgtcttcctcagag 692 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 105 acattgtcaacaaatgaaataaatagct 132 ||||||||||||||||||| ||||||| Sbjct: 1216 acattgtcaacaaatgaaacgaatagct 1189
>dbj|AK058827.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-H08, full insert sequence Length = 1346 Score = 182 bits (92), Expect = 9e-43 Identities = 182/212 (85%) Strand = Plus / Minus Query: 401 gtttctccctttcttctgtctccttgagtagaaagtccacccagagatctgcaaaggact 460 |||| ||||||||||| ||||| ||||| || ||||||||||| ||||| ||||| |||| Sbjct: 903 gtttttccctttcttccgtctctttgagcaggaagtccacccatagatccgcaaatgact 844 Query: 461 ggttatcctggggtgtatgtgtagatttgcctgctgaatttccaccaacaattcctccaa 520 |||| ||||| | || || |||| |||||||||||||||||| |||||||| ||||||| Sbjct: 843 ggttgtcctgagatgcttgagtaggtttgcctgctgaatttccgccaacaatgcctccaa 784 Query: 521 ctaggcgcccaggaagacccaaaacaccgcggacaacaaccttaccaacattgctctgtg 580 ||| ||| || ||||||||||||||||| ||||||||| |||| ||| |||| || |||| Sbjct: 783 ctaagcgtcctggaagacccaaaacaccccggacaacacccttgccagcattactttgtg 724 Query: 581 cagaaccgattctttgcttgtcctcctcagag 612 || |||| || ||||||||||| ||||||||| Sbjct: 723 caaaaccaatcctttgcttgtcttcctcagag 692 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 105 acattgtcaacaaatgaaataaatagct 132 ||||||||||||||||||| ||||||| Sbjct: 1216 acattgtcaacaaatgaaacgaatagct 1189
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 135 bits (68), Expect = 2e-28 Identities = 116/132 (87%) Strand = Plus / Minus Query: 481 gtagatttgcctgctgaatttccaccaacaattcctccaactaggcgcccaggaagaccc 540 |||| |||||||||||||||||| |||||||| |||||||||| ||| || ||||||||| Sbjct: 18261481 gtaggtttgcctgctgaatttccgccaacaatgcctccaactaagcgtcctggaagaccc 18261422 Query: 541 aaaacaccgcggacaacaaccttaccaacattgctctgtgcagaaccgattctttgcttg 600 |||||||| ||||||||| |||| ||| |||| || |||||| |||| || ||||||||| Sbjct: 18261421 aaaacaccccggacaacacccttgccagcattactttgtgcaaaaccaatcctttgcttg 18261362 Query: 601 tcctcctcagag 612 || ||||||||| Sbjct: 18261361 tcttcctcagag 18261350 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 401 gtttctccctttcttctgtctccttgagtagaaagtccacccagagatctgcaaaggact 460 |||| ||||||||||| ||||| ||||| || ||||||||||| ||||| ||||| |||| Sbjct: 18261758 gtttttccctttcttccgtctctttgagcaggaagtccacccatagatccgcaaatgact 18261699 Query: 461 g 461 | Sbjct: 18261698 g 18261698 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 105 acattgtcaacaaatgaaataaatagct 132 ||||||||||||||||||| ||||||| Sbjct: 18262071 acattgtcaacaaatgaaacgaatagct 18262044
>dbj|AP004689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0434E03 Length = 142414 Score = 135 bits (68), Expect = 2e-28 Identities = 116/132 (87%) Strand = Plus / Minus Query: 481 gtagatttgcctgctgaatttccaccaacaattcctccaactaggcgcccaggaagaccc 540 |||| |||||||||||||||||| |||||||| |||||||||| ||| || ||||||||| Sbjct: 83793 gtaggtttgcctgctgaatttccgccaacaatgcctccaactaagcgtcctggaagaccc 83734 Query: 541 aaaacaccgcggacaacaaccttaccaacattgctctgtgcagaaccgattctttgcttg 600 |||||||| ||||||||| |||| ||| |||| || |||||| |||| || ||||||||| Sbjct: 83733 aaaacaccccggacaacacccttgccagcattactttgtgcaaaaccaatcctttgcttg 83674 Query: 601 tcctcctcagag 612 || ||||||||| Sbjct: 83673 tcttcctcagag 83662 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 401 gtttctccctttcttctgtctccttgagtagaaagtccacccagagatctgcaaaggact 460 |||| ||||||||||| ||||| ||||| || ||||||||||| ||||| ||||| |||| Sbjct: 84070 gtttttccctttcttccgtctctttgagcaggaagtccacccatagatccgcaaatgact 84011 Query: 461 g 461 | Sbjct: 84010 g 84010 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 105 acattgtcaacaaatgaaataaatagct 132 ||||||||||||||||||| ||||||| Sbjct: 84383 acattgtcaacaaatgaaacgaatagct 84356
>emb|AL158070.11| Human DNA sequence from clone RP11-235C23 on chromosome 9q31.1-31.3 Contains part of a pseudogene similar to KIAA1272, KIAA0884, Drosophila CG5521 and rat Tulip 1 and 2 proteins, the 3' end of the CSDUFD1 gene for cystatin and DUF19 domain containing 1, a novel gene, the FCMD gene for Fukuyama type congenital muscular dystrophy protein, the TAL2 gene for T-cell acute lymphocytic leukemia 2 protein and two CpG islands, complete sequence Length = 167005 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 163 aaaaaagtcatccagcaatatatac 187 ||||||||||||||||||||||||| Sbjct: 33147 aaaaaagtcatccagcaatatatac 33171
>dbj|AB038490.1| Homo sapiens gene for fukutin, complete cds Length = 131892 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 163 aaaaaagtcatccagcaatatatac 187 ||||||||||||||||||||||||| Sbjct: 29719 aaaaaagtcatccagcaatatatac 29743
>emb|AL935046.6| Zebrafish DNA sequence from clone CH211-171K3, complete sequence Length = 162239 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 401 gtttctccctttcttctgtctcc 423 ||||||||||||||||||||||| Sbjct: 112548 gtttctccctttcttctgtctcc 112526
>gb|AC102248.19| Mus musculus chromosome 18, clone RP24-158I9, complete sequence Length = 206000 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 460 tggttatcctggggtgtatgtg 481 |||||||||||||||||||||| Sbjct: 97795 tggttatcctggggtgtatgtg 97774
>emb|BX324164.15| Zebrafish DNA sequence from clone DKEY-14D8 in linkage group 4 Contains the gene for a novel protein similar to vertebrate selenoprotein family, the gene for a novel protein similar to vertebrate vascular endothelial growth factor (VEGF), the gene for a novel protein similar to vertebrate mitogen-activated protein kinase family, the gene for a novel protein similar to vertebrate mitogen-activated protein kinase family, the gene for a novel protein similar to vertebrate scavenger receptor protein, two genes for novel proteins similar to vertebrate protein deleted in malignant brain tumors 1, fifteen novel genes and three CpG islands, complete sequence Length = 264155 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 490 cctgctgaatttccaccaacaattcc 515 ||||||||||||||||||||| |||| Sbjct: 28276 cctgctgaatttccaccaacatttcc 28251
>gb|AC093430.3| Homo sapiens chromosome 1 clone RP11-171B15, complete sequence Length = 153414 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 121 aaataaatagctcaaggccaggcaca 146 ||||||||| |||||||||||||||| Sbjct: 92495 aaataaatacctcaaggccaggcaca 92470
>ref|XM_681341.1| PREDICTED: Danio rerio similar to vascular endothelial growth factor (LOC558154), mRNA Length = 1675 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 490 cctgctgaatttccaccaacaattcc 515 ||||||||||||||||||||| |||| Sbjct: 860 cctgctgaatttccaccaacatttcc 835
>ref|XM_744953.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g02960) partial mRNA Length = 636 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 569 cattgctctgtgcagaaccga 589 ||||||||||||||||||||| Sbjct: 39 cattgctctgtgcagaaccga 59
>gb|AC146854.19| Medicago truncatula clone mth2-10i14, complete sequence Length = 116179 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 502 ccaccaacaattcctccaact 522 ||||||||||||||||||||| Sbjct: 11476 ccaccaacaattcctccaact 11456
>emb|AL391883.17| Human DNA sequence from clone RP11-91K11 on chromosome 1 Contains the 5' end of the gene for a novel protein (LOC255104), the gene for a novel protein (FLJ20225), a novel gene and the 5' end of the gene for a novel protein (KIAA0459), complete sequence Length = 126371 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 tccctttcttctgtctccttg 426 ||||||||||||||||||||| Sbjct: 37945 tccctttcttctgtctccttg 37925
>gb|AC093601.4| Homo sapiens BAC clone RP11-338P22 from 4, complete sequence Length = 118129 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 ctccctttcttctgtctcctt 425 ||||||||||||||||||||| Sbjct: 105913 ctccctttcttctgtctcctt 105893
>gb|AC009466.17|AC009466 Homo sapiens chromosome 11, clone RP11-87N22, complete sequence Length = 193279 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 155 ttaaaaggaaaaaagtcatccagca 179 ||||||||||| ||||||||||||| Sbjct: 175601 ttaaaaggaaataagtcatccagca 175577
>gb|AC117440.5| Homo sapiens 3 BAC RP11-575C1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 199386 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 gtaagacttaaaaggaaaaaa 168 ||||||||||||||||||||| Sbjct: 53486 gtaagacttaaaaggaaaaaa 53466
>dbj|AP002840.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-159N11, complete sequence Length = 177031 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 155 ttaaaaggaaaaaagtcatccagca 179 ||||||||||| ||||||||||||| Sbjct: 6813 ttaaaaggaaataagtcatccagca 6789
>dbj|AK027161.1| Homo sapiens cDNA: FLJ23508 fis, clone LNG03158 Length = 1797 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 155 ttaaaaggaaaaaagtcatccagca 179 ||||||||||| ||||||||||||| Sbjct: 713 ttaaaaggaaataagtcatccagca 689
>dbj|AP000880.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-839D17, complete sequence Length = 171853 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 155 ttaaaaggaaaaaagtcatccagca 179 ||||||||||| ||||||||||||| Sbjct: 158997 ttaaaaggaaataagtcatccagca 158973
>gb|AC151762.1| Ornithorhynchus anatinus chromosome UNK clone OABb-451A1, complete sequence Length = 160077 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 catttacatatttccttaga 53 |||||||||||||||||||| Sbjct: 122950 catttacatatttccttaga 122969
>gb|AC111071.8| Mus musculus chromosome 15, clone RP24-298N6, complete sequence Length = 157812 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ttctccctttcttctgtctc 422 |||||||||||||||||||| Sbjct: 87236 ttctccctttcttctgtctc 87255
>gb|AC108853.7| Mus musculus chromosome 8, clone RP24-87L12, complete sequence Length = 171410 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 tctccctttcttctgtctcc 423 |||||||||||||||||||| Sbjct: 91653 tctccctttcttctgtctcc 91634
>gb|AY253316.1| HIV-1 isolate 01TZA387 from Tanzania gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds Length = 8771 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 498 atttccaccaacaattcctc 517 |||||||||||||||||||| Sbjct: 5462 atttccaccaacaattcctc 5443
>ref|NM_001007701.1| Rattus norvegicus translocation associated membrane protein 1 (Tram1), mRNA Length = 2778 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 tgcttgtaaatttgatgcac 346 |||||||||||||||||||| Sbjct: 2095 tgcttgtaaatttgatgcac 2114
>gb|AC146037.1| Pan troglodytes BAC clone RP43-44A5 from 7, complete sequence Length = 177637 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 atagctcaaggccaggcaca 146 |||||||||||||||||||| Sbjct: 95922 atagctcaaggccaggcaca 95903
>gb|AC137511.3| Mus musculus BAC clone RP24-313I8 from chromosome 5, complete sequence Length = 168197 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 cctggggtgtatgtgtagat 486 |||||||||||||||||||| Sbjct: 103205 cctggggtgtatgtgtagat 103186
>emb|AL731765.5| Human DNA sequence from clone RP11-268L7 on chromosome X, complete sequence Length = 64790 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 gtctgtgtggatgtatatat 230 |||||||||||||||||||| Sbjct: 38127 gtctgtgtggatgtatatat 38108
>emb|AL008639.15|HS9E21 Human DNA sequence from clone RP1-9E21 on chromosome 1q24-25 Contains the 3' end of a pseudogene similar to flavin-containing monooxygenase proteins, a calponin 2 (CNN2) pseudogene, the POGK gene for pogo transposable element with KRAB domain, the 3' end of the gene for SPT3-associated factor 42 (STAF42) and a CpG island, complete sequence Length = 106977 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 gccaggcacatgtaagacttaaaa 160 |||||||||||| ||||||||||| Sbjct: 44132 gccaggcacatgcaagacttaaaa 44109
>gb|AC090132.3| Homo sapiens chromosome 8, clone RP11-813B8, complete sequence Length = 205004 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 acattgtcaacaaatgaaataaat 128 ||||| |||||||||||||||||| Sbjct: 181596 acattatcaacaaatgaaataaat 181619
>gb|U80843.2| Caenorhabditis elegans cosmid C32B5, complete sequence Length = 42645 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 tgaatttccaccaacaattc 514 |||||||||||||||||||| Sbjct: 9267 tgaatttccaccaacaattc 9286
>ref|NM_001009467.1| Ovis aries 6-phosphogluconate dehydrogenase (decarboxylating) (6-PGDH), mRNA Length = 1918 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 aaaaaagtcatccagcaata 182 |||||||||||||||||||| Sbjct: 1255 aaaaaagtcatccagcaata 1236
>gb|AC016766.6| Homo sapiens BAC clone RP11-558I6 from 2, complete sequence Length = 194374 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 162 gaaaaaagtcatccagcaatatat 185 ||||||| |||||||||||||||| Sbjct: 36140 gaaaaaactcatccagcaatatat 36117
>gb|AC149286.4| Pan troglodytes BAC clone CH251-514L10 from chromosome 7, complete sequence Length = 180713 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 atagctcaaggccaggcaca 146 |||||||||||||||||||| Sbjct: 129983 atagctcaaggccaggcaca 130002
>gb|AC157654.2| Mus musculus BAC clone RP24-286J10 from chromosome 13, complete sequence Length = 152221 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 accacattgtcaacaaatga 121 |||||||||||||||||||| Sbjct: 89665 accacattgtcaacaaatga 89646
>gb|AC084624.1|CBRG45A12 Caenorhabditis briggsae cosmid G45A12, complete sequence Length = 37586 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 gaccaaaaactttgaatgga 93 |||||||||||||||||||| Sbjct: 14859 gaccaaaaactttgaatgga 14840
>gb|AC019159.8| Homo sapiens BAC clone RP11-56O18 from 2, complete sequence Length = 163085 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tggaaaggccaggatttgca 315 |||||||||||||||||||| Sbjct: 132921 tggaaaggccaggatttgca 132902
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 536 gacccaaaacaccgcggaca 555 |||||||||||||||||||| Sbjct: 1108370 gacccaaaacaccgcggaca 1108351
>gb|BC083851.1| Rattus norvegicus translocation associated membrane protein 1, mRNA (cDNA clone MGC:95042 IMAGE:7123274), complete cds Length = 2778 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 tgcttgtaaatttgatgcac 346 |||||||||||||||||||| Sbjct: 2095 tgcttgtaaatttgatgcac 2114
>gb|AC133169.3| Mus musculus BAC clone RP24-259I15 from 9, complete sequence Length = 163930 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 ctccctttcttctgtctcct 424 |||||||||||||||||||| Sbjct: 84464 ctccctttcttctgtctcct 84483
>emb|X60195.1|OA6PDGH Ovine 6-pgdh mRNA for 6-phosphogluconate dehydrogenase Length = 1953 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 aaaaaagtcatccagcaata 182 |||||||||||||||||||| Sbjct: 1255 aaaaaagtcatccagcaata 1236
>emb|AL672307.9| Mouse DNA sequence from clone RP23-141N2 on chromosome 2, complete sequence Length = 206168 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 406 tccctttcttctgtctccttgagt 429 ||||| |||||||||||||||||| Sbjct: 140229 tccctctcttctgtctccttgagt 140206
>emb|AL837521.6| Mouse DNA sequence from clone RP23-28I8 on chromosome 4, complete sequence Length = 230493 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 atgcgtctgtgtggatgtat 226 |||||||||||||||||||| Sbjct: 139049 atgcgtctgtgtggatgtat 139068
>gb|AC125613.2| Homo sapiens 3 BAC RP11-379M20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 78087 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 395 ctttttgtttctccctttcttctgtctc 422 |||||| ||||| ||||||||||||||| Sbjct: 21374 ctttttctttcttcctttcttctgtctc 21347 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,519,436 Number of Sequences: 3902068 Number of extensions: 7519436 Number of successful extensions: 158936 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 158774 Number of HSP's gapped (non-prelim): 162 length of query: 613 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 590 effective length of database: 17,143,297,704 effective search space: 10114545645360 effective search space used: 10114545645360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
