ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal32e04 |
|---|---|
| Clone Library Name | barley_pub |
>Y1561_METJA (Q58956) Hypothetical protein MJ1561| Length = 553 Score = 32.3 bits (72), Expect = 0.80 Identities = 13/53 (24%), Positives = 31/53 (58%) Frame = -1 Query: 421 VQGKLELSHLTPGVTYEVFFEVKLDDPAYGWSTPVNLRLKFPDGTIQQQKENL 263 ++GK +SHL PG + V+F++ +D+ A +++++ + + + KE + Sbjct: 76 IKGKATISHLNPGESDTVYFKLHVDENAPSRDYEIDVKVSYDEINKEDGKETI 128
>SPIC_HUMAN (Q8N5J4) Transcription factor Spi-C| Length = 248 Score = 31.6 bits (70), Expect = 1.4 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Frame = -1 Query: 349 DDPAYGWSTPVNLRLKFP-DGTIQQQKENLQEKPRGKWLQVKVGEVKPHKGQNGEVEISM 173 ++P Y W T +N F +G I Q +N+ E Q+ + KG G ++ + Sbjct: 60 EEPVYNWRTVINSAADFYFEGNIHQSLQNITEN------QLVQPTLLQQKGGKGRKKLRL 113 Query: 172 FEY 164 FEY Sbjct: 114 FEY 116
>Y1506_METJA (Q58901) Hypothetical protein MJ1506| Length = 437 Score = 31.2 bits (69), Expect = 1.8 Identities = 13/51 (25%), Positives = 30/51 (58%) Frame = -1 Query: 421 VQGKLELSHLTPGVTYEVFFEVKLDDPAYGWSTPVNLRLKFPDGTIQQQKE 269 ++GK +SHL PG + V+F++ +D+ A +++++ + + + KE Sbjct: 117 IKGKATISHLNPGESDTVYFKLHVDENAPSRDYRIDVKVSYDEVDKEDGKE 167
>ZNT1_MOUSE (Q60738) Zinc transporter 1 (ZnT-1) (Solute carrier family 30| member 1) Length = 503 Score = 30.8 bits (68), Expect = 2.3 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -3 Query: 407 GAVPSHARSHLRGLLRGEARRPGLRVVDAGEPPAQVPRRHD 285 GA H+ H G L AR+ G V+AG PP + P + + Sbjct: 143 GAGHGHSHGHGHGHLAKGARKAGRAGVEAGAPPGRAPDQEE 183
>RIMM_MYCTU (P66653) Probable 16S rRNA-processing protein rimM| Length = 176 Score = 30.4 bits (67), Expect = 3.0 Identities = 18/42 (42%), Positives = 24/42 (57%) Frame = -1 Query: 421 VQGKLELSHLTPGVTYEVFFEVKLDDPAYGWSTPVNLRLKFP 296 V G++ SH GVT EV E++ DDPA ++ LR K P Sbjct: 4 VVGRVVKSH---GVTGEVVVEIRTDDPADRFAPGTRLRAKGP 42
>RIMM_MYCBO (P66654) Probable 16S rRNA-processing protein rimM| Length = 176 Score = 30.4 bits (67), Expect = 3.0 Identities = 18/42 (42%), Positives = 24/42 (57%) Frame = -1 Query: 421 VQGKLELSHLTPGVTYEVFFEVKLDDPAYGWSTPVNLRLKFP 296 V G++ SH GVT EV E++ DDPA ++ LR K P Sbjct: 4 VVGRVVKSH---GVTGEVVVEIRTDDPADRFAPGTRLRAKGP 42
>IP3KC_RAT (Q80ZG2) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol| 1,4,5-trisphosphate 3-kinase C) (IP3K-C) Length = 678 Score = 30.4 bits (67), Expect = 3.0 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -3 Query: 413 EAGAVPSHARSHLRGLLRGEARRPGLR 333 EAGA+P+ AR L L G R+PGL+ Sbjct: 14 EAGALPAEARMGLEALRGGRRRQPGLQ 40
>IP3KC_MOUSE (Q7TS72) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol| 1,4,5-trisphosphate 3-kinase C) (IP3K-C) Length = 678 Score = 30.4 bits (67), Expect = 3.0 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -3 Query: 413 EAGAVPSHARSHLRGLLRGEARRPGLR 333 EAGA+P+ AR L L G R+PGL+ Sbjct: 14 EAGALPAEARMGLEALRGGRRRQPGLQ 40
>LON_BRECH (P36772) ATP-dependent protease La (EC 3.4.21.53)| Length = 779 Score = 29.6 bits (65), Expect = 5.2 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 12/75 (16%) Frame = -1 Query: 361 EVKLDDP------AYGWSTPVNLRLKFPDGTIQQQKENLQEKPRGKWLQ------VKVGE 218 EV +++P + G V LK P+GTI+ E LQ ++LQ V + Sbjct: 56 EVHIEEPDAEQIYSIGTVARVKQMLKLPNGTIRVLVEGLQRAKIEEYLQKEDYFVVSITY 115 Query: 217 VKPHKGQNGEVEISM 173 +K K + EVE M Sbjct: 116 LKEEKAEENEVEALM 130
>NUMBL_HUMAN (Q9Y6R0) Numb-like protein (Numb-R)| Length = 609 Score = 29.6 bits (65), Expect = 5.2 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = -3 Query: 497 TGLGTP*KKEG--RNRDGGAAERLLAGGPREAGAVPSHARSHLRGLLRGEARRPGLRVVD 324 +G G P ++E + + AA +A GP + G V + G +GEA P V Sbjct: 228 SGGGRPAEREAPDKKKAEAAAAPTVAPGPAQPGHVSPTPATTSPGE-KGEAGTP----VA 282 Query: 323 AGEPPAQVPRRHDP 282 AG A +PRRH P Sbjct: 283 AGTTAAAIPRRHAP 296
>CF010_HUMAN (Q5SRN2) Protein C6orf10| Length = 563 Score = 29.6 bits (65), Expect = 5.2 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%) Frame = -1 Query: 373 EVFFEVKLDDPAYGWSTPVNLRLKF-----PDGTIQQQKENLQEKPRGKWLQVKVGEVKP 209 ++ EVK+D A G +LK P G Q K+++ + PRG+ QVK E Sbjct: 287 KIGMEVKVDSDA-GIPKRQETQLKISEMSIPQGQGAQIKKSVSDVPRGQESQVKKSESGV 345 Query: 208 HKGQNGEV 185 KGQ +V Sbjct: 346 PKGQEAQV 353
>NUMBL_MOUSE (O08919) Numb-like protein| Length = 604 Score = 29.6 bits (65), Expect = 5.2 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = -3 Query: 497 TGLGTP*KKEG--RNRDGGAAERLLAGGPREAGAVPSHARSHLRGLLRGEARRPGLRVVD 324 +G G P ++E + + AA +A GP + G V + G +GEA P V Sbjct: 228 SGGGRPAEREAGDKKKAEAAAAPAVAPGPAQPGHVSPTPATTSPGE-KGEAGTP----VA 282 Query: 323 AGEPPAQVPRRHDP 282 AG A +PRRH P Sbjct: 283 AGTTAAAIPRRHAP 296
>FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related protein FKHL17)| (Forkhead-related transcription factor 9) (FREAC-9) Length = 497 Score = 29.3 bits (64), Expect = 6.8 Identities = 22/69 (31%), Positives = 27/69 (39%) Frame = -3 Query: 518 PGAKTPSTGLGTP*KKEGRNRDGGAAERLLAGGPREAGAVPSHARSHLRGLLRGEARRPG 339 P A + GL T ++G D G GG AG PS + H+ G G A PG Sbjct: 375 PPAAGTAAGLPTALLRQGLKTDAGGGA---GGGGAGAGQRPSFSIDHIMGHGGGGAAPPG 431 Query: 338 LRVVDAGEP 312 G P Sbjct: 432 AGEGSPGPP 440
>ADH4_MOUSE (Q9QYY9) Alcohol dehydrogenase 4 (EC 1.1.1.1) (Alcohol| dehydrogenase class II) (Alcohol dehydrogenase II) (ADH2) Length = 376 Score = 29.3 bits (64), Expect = 6.8 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -2 Query: 96 FGFGCVLLPAIIGCCLSTALRSVS 25 FG GCV L AIIGC ++ A R ++ Sbjct: 202 FGLGCVGLSAIIGCKIAGASRIIA 225
>FTSK_VIBPA (Q87QP4) DNA translocase ftsK| Length = 1028 Score = 28.9 bits (63), Expect = 8.9 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%) Frame = +2 Query: 92 PNHSFFWDDLDALDKEPPL--PLPTIIL 169 P H FW + D++D EPPL LP I++ Sbjct: 786 PIHDPFWQEGDSMDTEPPLLEKLPYIVV 813
>FTSK_VIBVU (Q8D8M2) DNA translocase ftsK| Length = 990 Score = 28.9 bits (63), Expect = 8.9 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%) Frame = +2 Query: 92 PNHSFFWDDLDALDKEPPL--PLPTIIL 169 P H FW + D++D EPPL LP I++ Sbjct: 743 PIHDPFWQEGDSMDTEPPLLEKLPYIVV 770
>PCDC2_PANTR (Q5DRE1) Protocadherin alpha C2 precursor (PCDH-alpha-C2)| Length = 1007 Score = 28.9 bits (63), Expect = 8.9 Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Frame = -1 Query: 517 LERRPQVLDLAPPERRKAGIETVALQNVCWLEVQGKLELSHLTPGVTYEVFFEVKLDDPA 338 L+ +VL+L R+ E AL ++ V G + T ++ V + + PA Sbjct: 200 LQENSKVLELVL--RKGLDREQAALHHLVLTAVDGGIPARSGTAQISVRVL-DTNDNSPA 256 Query: 337 YGWST-PVNLRLKFPDGTIQQQKENLQEKPRGKWLQVKVGEVKPHKGQNGEVEISMFEY 164 + ST V LR P GT L VK+ P +G NGE+ S+ Y Sbjct: 257 FDQSTYRVQLREDSPPGT----------------LVVKLNASDPDEGSNGELRYSLSSY 299
>PCDC2_HUMAN (Q9Y5I4) Protocadherin alpha C2 precursor (PCDH-alpha-C2)| Length = 1007 Score = 28.9 bits (63), Expect = 8.9 Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 1/119 (0%) Frame = -1 Query: 517 LERRPQVLDLAPPERRKAGIETVALQNVCWLEVQGKLELSHLTPGVTYEVFFEVKLDDPA 338 L+ +VL+L R+ E AL ++ V G + T ++ V + + PA Sbjct: 200 LQENSKVLELVL--RKGLDREQAALHHLVLTAVDGGIPARSGTAQISVRVL-DTNDNSPA 256 Query: 337 YGWST-PVNLRLKFPDGTIQQQKENLQEKPRGKWLQVKVGEVKPHKGQNGEVEISMFEY 164 + ST V LR P GT L VK+ P +G NGE+ S+ Y Sbjct: 257 FDQSTYRVQLREDSPPGT----------------LVVKLNASDPDEGSNGELRYSLSSY 299
>ADH4_RAT (Q64563) Alcohol dehydrogenase 4 (EC 1.1.1.1) (Alcohol| dehydrogenase class II) (Alcohol dehydrogenase II) (ADH2) Length = 376 Score = 28.9 bits (63), Expect = 8.9 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -2 Query: 96 FGFGCVLLPAIIGCCLSTALRSVS 25 FG GCV L A+IGC ++ A R ++ Sbjct: 202 FGLGCVGLSAVIGCKIAGASRIIA 225
>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase| (EC 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3259 Score = 28.9 bits (63), Expect = 8.9 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 8/64 (12%) Frame = -3 Query: 464 RNRDGGAAERLLAGGPREAGAVPSHARSHLRGLLRGEARRPGL--------RVVDAGEPP 309 +NR G AE+ L GP E G + R R +G RP V AGE P Sbjct: 664 KNRAGPEAEKRLRRGPEEDGPWGAWDRRGTRSQGKGRRARPTSPELESSDDSYVSAGEEP 723 Query: 308 AQVP 297 + P Sbjct: 724 LEAP 727 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,805,672 Number of Sequences: 219361 Number of extensions: 1407778 Number of successful extensions: 5129 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4805 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5124 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
