Clone Information

BLAST Search Result

Clone Name	rbaal32e04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_550208.1\| Oryza sativa (japonica cultivar-group), mRNA	157	4e-35
2	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	157	4e-35
3	dbj\|AP002521.1\| Oryza sativa (japonica cultivar-group) genomic D...	157	4e-35
4	dbj\|AK063812.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	157	4e-35
5	dbj\|AP002539.2\| Oryza sativa (japonica cultivar-group) genomic D...	157	4e-35
6	dbj\|AK102322.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
7	dbj\|AP003225.3\| Oryza sativa (japonica cultivar-group) genomic D...	133	6e-28
8	gb\|AC005610.1\| Homo sapiens chromosome 5, PAC clone 502L6 (LBNL ...	46	0.11
9	gb\|AC010626.6\| Homo sapiens chromosome 5 clone CTD-2138K21, comp...	46	0.11
10	dbj\|AP006184.1\| Sus scrofa CC chemokine receptor genes (CCR9, CX...	46	0.11
11	gb\|CP000081.1\| Leishmania major chromosome 35, complete sequence	44	0.45
12	emb\|AL645907.9\| Mouse DNA sequence from clone RP23-9N7 on chromo...	44	0.45
13	gb\|DQ369998.1\| HIV-1 isolate 04ZASK172B1 from South Africa, comp...	44	0.45
14	gb\|AC126796.4\| Mus musculus BAC clone RP23-384F19 from chromosom...	42	1.8
15	emb\|AL162424.20\| Human DNA sequence from clone RP11-498E2 on chr...	42	1.8
16	gb\|AC125204.4\| Mus musculus BAC clone RP23-237H8 from 10, comple...	42	1.8
17	gb\|AF355464.1\|AF355464 Oryctolagus cuniculus flavin-containing m...	42	1.8
18	gb\|AY085730.1\| Arabidopsis thaliana clone 17437 mRNA, complete s...	42	1.8
19	gb\|AC104038.9\| Homo sapiens chromosome 11, clone RP11-746C23, co...	42	1.8
20	emb\|AL953872.7\| Zebrafish DNA sequence from clone CH211-235H23, ...	42	1.8
21	gb\|CP000148.1\| Geobacter metallireducens GS-15, complete genome	40	7.0
22	gb\|AC155713.14\| Mus musculus 10 BAC RP24-117K18 (Roswell Park Ca...	40	7.0
23	ref\|XM_870543.1\| PREDICTED: Bos taurus similar to Rho guanine nu...	40	7.0
24	gb\|AC167241.2\| Mus musculus BAC clone RP24-560M14 from chromosom...	40	7.0
25	emb\|AJ459965.1\|ECA459965 Equus caballus CRISP3 gene for cysteine...	40	7.0
26	ref\|XM_806090.1\| Trypanosoma cruzi strain CL Brener Unc104-like ...	40	7.0
27	gb\|BC059305.1\| Xenopus laevis hypothetical protein MGC68950, mRN...	40	7.0
28	gb\|AC112683.10\| Mus musculus chromosome 17, clone RP23-332P1, co...	40	7.0
29	gb\|AC166559.2\| Spironucleus vortens clone JGIBAWF-5H13, complete...	40	7.0
30	gb\|DQ472026.1\| Nautilus macromphalus mitochondrion, complete genome	40	7.0
31	emb\|AL445675.9\| Human DNA sequence from clone RP11-498M14 on chr...	40	7.0
32	emb\|AL365402.17\| Human DNA sequence from clone RP11-445K1 on chr...	40	7.0
33	gb\|AF491081.1\| Garmannia chiquita 12S ribosomal RNA gene, partia...	40	7.0
34	emb\|AL078477.5\|HSDJ259N9 Human DNA sequence from clone RP1-69B10...	40	7.0
35	emb\|Y07760.1\|CAV1GENOM Canine adenovirus type 1 complete genome	40	7.0
36	gb\|AC154328.2\| Mus musculus BAC clone RP23-298N23 from chromosom...	40	7.0
37	gb\|AY834753.1\| Cystobacter fuscus cystothiazole A gene cluster, ...	40	7.0
38	gb\|AC109604.8\| Mus musculus strain 129Sv/CJ7 clone rp22-298k22, ...	40	7.0
39	gb\|AY034137.1\| Rattus norvegicus aldehyde dehydrogenase gene, ex...	40	7.0
40	gb\|AE016819.2\| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	40	7.0
41	gb\|AC011631.6\|AC011631 Homo sapiens, clone RP11-1I20, complete s...	40	7.0
42	gb\|AC008068.4\| Homo sapiens BAC clone RP11-334F17 from 2, comple...	40	7.0
43	gb\|AC011293.5\|AC011293 Homo sapiens BAC clone RP11-75F5 from Y, ...	40	7.0
44	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	7.0
45	gb\|AC087653.6\| Homo sapiens chromosome 11, clone RP1-259N9, comp...	40	7.0
46	gb\|M60937.1\|AECE2AA Canine adenovirus type 1 putative ORF1 (p-VI...	40	7.0
47	emb\|AL954697.15\| Zebrafish DNA sequence from clone CH211-286K11 ...	40	7.0
48	emb\|AJ328806.1\|HSA328806 Homo sapiens genomic sequence surroundi...	40	7.0
49	ref\|NM_210773.1\| Eremothecium gossypii AFL131Wp (AFL131W), mRNA	40	7.0
50	gb\|AC153866.6\| Mus musculus 10 BAC RP23-350O24 (Roswell Park Can...	40	7.0
51	gb\|AC153920.5\| Mus musculus 10 BAC RP23-82M21 (Roswell Park Canc...	40	7.0
52	gb\|AC078897.20\| Mus musculus strain C57BL/6J chromosome 3 clone ...	40	7.0
53	emb\|CR936257.1\| Natronomonas pharaonis DSM 2160 complete genome	40	7.0
54	gb\|U55001.1\|CAU55001 Canine adenovirus type 1 E1A protein, small...	40	7.0
55	emb\|AL845156.5\| Mouse DNA sequence from clone RP23-340F21 on chr...	40	7.0

>ref|XM_550208.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 869

 Score =  157 bits (79), Expect = 4e-35
 Identities = 280/347 (80%)
 Strand = Plus / Minus

                                                                       
Query: 101 tcattcttttgggatgatcttgatgcccttgataaggagccccctcttccactgcccacc 160
           ||||| ||||||||  |||||||| |||||||| || ||||| ||||||||| |||||||
Sbjct: 777 tcattgttttgggagaatcttgattcccttgattagtagccctctcttccacagcccacc 718

                                                                       
Query: 161 atcatactcaaacatggagatctcaacctctccattctgccccttgtgcggcttaacctc 220
           |||||||||||||||||| ||||||| |||||| ||||||||||  || |  || |||||
Sbjct: 717 atcatactcaaacatggatatctcaatctctcccttctgcccctgctgggttttcacctc 658

                                                                       
Query: 221 cccaaccttgacctgcagccacttccccctgggcttctcctgcaggttctccttctgctg 280
           ||| ||||||| || |||||| |||  ||||  ||||||||  || ||||| ||  ||||
Sbjct: 657 cccgaccttgagctccagccatttcatcctgatcttctcctcaagattctctttacgctg 598

                                                                       
Query: 281 ctggatcgtgccgtcggggaacttgagccggaggttcaccggcgtcgaccacccgtaggc 340
           |||||  || || || |||||||||||| | |||||||| ||    ||||||||||| ||
Sbjct: 597 ctggactgttccatcagggaacttgagctgaaggttcactgggacagaccacccgtatgc 538

                                                                       
Query: 341 cgggtcgtcgagcttcacctcgaagaagacctcgtaggtgactcctggcgtgagatggga 400
            || ||    ||| | || || ||||  ||||| |||||||||||||| || |||| |||
Sbjct: 537 aggatcaataagcattacttcaaagagaacctcataggtgactcctggtgtaagatagga 478

                                                          
Query: 401 cagctccagcttcccttggacctccagccagcagacgttctgcagcg 447
           | | || |||||||| |||| ||| | ||||||||||||||||||||
Sbjct: 477 ccgttcaagcttcccatggatctctaaccagcagacgttctgcagcg 431



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 467 cttccttctttcagggggtgccaagtccagtacttggggtcttcgctcca 516
           |||||||||||||| || | |||||||||| |  |||||||||| |||||
Sbjct: 392 cttccttctttcagaggtttccaagtccagaatctggggtcttcactcca 343

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  157 bits (79), Expect = 4e-35
 Identities = 280/347 (80%)
 Strand = Plus / Plus

                                                                           
Query: 101     tcattcttttgggatgatcttgatgcccttgataaggagccccctcttccactgcccacc 160
               ||||| ||||||||  |||||||| |||||||| || ||||| ||||||||| |||||||
Sbjct: 3057656 tcattgttttgggagaatcttgattcccttgattagtagccctctcttccacagcccacc 3057715

                                                                           
Query: 161     atcatactcaaacatggagatctcaacctctccattctgccccttgtgcggcttaacctc 220
               |||||||||||||||||| ||||||| |||||| ||||||||||  || |  || |||||
Sbjct: 3057716 atcatactcaaacatggatatctcaatctctcccttctgcccctgctgggttttcacctc 3057775

                                                                           
Query: 221     cccaaccttgacctgcagccacttccccctgggcttctcctgcaggttctccttctgctg 280
               ||| ||||||| || |||||| |||  ||||  ||||||||  || ||||| ||  ||||
Sbjct: 3057776 cccgaccttgagctccagccatttcatcctgatcttctcctcaagattctctttacgctg 3057835

                                                                           
Query: 281     ctggatcgtgccgtcggggaacttgagccggaggttcaccggcgtcgaccacccgtaggc 340
               |||||  || || || |||||||||||| | |||||||| ||    ||||||||||| ||
Sbjct: 3057836 ctggactgttccatcagggaacttgagctgaaggttcactgggacagaccacccgtatgc 3057895

                                                                           
Query: 341     cgggtcgtcgagcttcacctcgaagaagacctcgtaggtgactcctggcgtgagatggga 400
                || ||    ||| | || || ||||  ||||| |||||||||||||| || |||| |||
Sbjct: 3057896 aggatcaataagcattacttcaaagagaacctcataggtgactcctggtgtaagatagga 3057955

                                                              
Query: 401     cagctccagcttcccttggacctccagccagcagacgttctgcagcg 447
               | | || |||||||| |||| ||| | ||||||||||||||||||||
Sbjct: 3057956 ccgttcaagcttcccatggatctctaaccagcagacgttctgcagcg 3058002



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                  
Query: 466     ccttccttctttcagggggtgccaagtccagtacttggggtcttcgctcca 516
               ||||||||||||||| || | |||||||||| |  |||||||||| |||||
Sbjct: 3058151 ccttccttctttcagaggtttccaagtccagaatctggggtcttcactcca 3058201

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>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0041E11
          Length = 146335

 Score =  157 bits (79), Expect = 4e-35
 Identities = 280/347 (80%)
 Strand = Plus / Plus

                                                                        
Query: 101  tcattcttttgggatgatcttgatgcccttgataaggagccccctcttccactgcccacc 160
            ||||| ||||||||  |||||||| |||||||| || ||||| ||||||||| |||||||
Sbjct: 1444 tcattgttttgggagaatcttgattcccttgattagtagccctctcttccacagcccacc 1503

                                                                        
Query: 161  atcatactcaaacatggagatctcaacctctccattctgccccttgtgcggcttaacctc 220
            |||||||||||||||||| ||||||| |||||| ||||||||||  || |  || |||||
Sbjct: 1504 atcatactcaaacatggatatctcaatctctcccttctgcccctgctgggttttcacctc 1563

                                                                        
Query: 221  cccaaccttgacctgcagccacttccccctgggcttctcctgcaggttctccttctgctg 280
            ||| ||||||| || |||||| |||  ||||  ||||||||  || ||||| ||  ||||
Sbjct: 1564 cccgaccttgagctccagccatttcatcctgatcttctcctcaagattctctttacgctg 1623

                                                                        
Query: 281  ctggatcgtgccgtcggggaacttgagccggaggttcaccggcgtcgaccacccgtaggc 340
            |||||  || || || |||||||||||| | |||||||| ||    ||||||||||| ||
Sbjct: 1624 ctggactgttccatcagggaacttgagctgaaggttcactgggacagaccacccgtatgc 1683

                                                                        
Query: 341  cgggtcgtcgagcttcacctcgaagaagacctcgtaggtgactcctggcgtgagatggga 400
             || ||    ||| | || || ||||  ||||| |||||||||||||| || |||| |||
Sbjct: 1684 aggatcaataagcattacttcaaagagaacctcataggtgactcctggtgtaagatagga 1743

                                                           
Query: 401  cagctccagcttcccttggacctccagccagcagacgttctgcagcg 447
            | | || |||||||| |||| ||| | ||||||||||||||||||||
Sbjct: 1744 ccgttcaagcttcccatggatctctaaccagcagacgttctgcagcg 1790



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                               
Query: 466  ccttccttctttcagggggtgccaagtccagtacttggggtcttcgctcca 516
            ||||||||||||||| || | |||||||||| |  |||||||||| |||||
Sbjct: 1939 ccttccttctttcagaggtttccaagtccagaatctggggtcttcactcca 1989

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>dbj|AK063812.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-G12, full
           insert sequence
          Length = 869

 Score =  157 bits (79), Expect = 4e-35
 Identities = 280/347 (80%)
 Strand = Plus / Minus

                                                                       
Query: 101 tcattcttttgggatgatcttgatgcccttgataaggagccccctcttccactgcccacc 160
           ||||| ||||||||  |||||||| |||||||| || ||||| ||||||||| |||||||
Sbjct: 777 tcattgttttgggagaatcttgattcccttgattagtagccctctcttccacagcccacc 718

                                                                       
Query: 161 atcatactcaaacatggagatctcaacctctccattctgccccttgtgcggcttaacctc 220
           |||||||||||||||||| ||||||| |||||| ||||||||||  || |  || |||||
Sbjct: 717 atcatactcaaacatggatatctcaatctctcccttctgcccctgctgggttttcacctc 658

                                                                       
Query: 221 cccaaccttgacctgcagccacttccccctgggcttctcctgcaggttctccttctgctg 280
           ||| ||||||| || |||||| |||  ||||  ||||||||  || ||||| ||  ||||
Sbjct: 657 cccgaccttgagctccagccatttcatcctgatcttctcctcaagattctctttacgctg 598

                                                                       
Query: 281 ctggatcgtgccgtcggggaacttgagccggaggttcaccggcgtcgaccacccgtaggc 340
           |||||  || || || |||||||||||| | |||||||| ||    ||||||||||| ||
Sbjct: 597 ctggactgttccatcagggaacttgagctgaaggttcactgggacagaccacccgtatgc 538

                                                                       
Query: 341 cgggtcgtcgagcttcacctcgaagaagacctcgtaggtgactcctggcgtgagatggga 400
            || ||    ||| | || || ||||  ||||| |||||||||||||| || |||| |||
Sbjct: 537 aggatcaataagcattacttcaaagagaacctcataggtgactcctggtgtaagatagga 478

                                                          
Query: 401 cagctccagcttcccttggacctccagccagcagacgttctgcagcg 447
           | | || |||||||| |||| ||| | ||||||||||||||||||||
Sbjct: 477 ccgttcaagcttcccatggatctctaaccagcagacgttctgcagcg 431



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 467 cttccttctttcagggggtgccaagtccagtacttggggtcttcgctcca 516
           |||||||||||||| || | |||||||||| |  |||||||||| |||||
Sbjct: 392 cttccttctttcagaggtttccaagtccagaatctggggtcttcactcca 343

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>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0433F09
          Length = 150150

 Score =  157 bits (79), Expect = 4e-35
 Identities = 280/347 (80%)
 Strand = Plus / Plus

                                                                         
Query: 101   tcattcttttgggatgatcttgatgcccttgataaggagccccctcttccactgcccacc 160
             ||||| ||||||||  |||||||| |||||||| || ||||| ||||||||| |||||||
Sbjct: 25696 tcattgttttgggagaatcttgattcccttgattagtagccctctcttccacagcccacc 25755

                                                                         
Query: 161   atcatactcaaacatggagatctcaacctctccattctgccccttgtgcggcttaacctc 220
             |||||||||||||||||| ||||||| |||||| ||||||||||  || |  || |||||
Sbjct: 25756 atcatactcaaacatggatatctcaatctctcccttctgcccctgctgggttttcacctc 25815

                                                                         
Query: 221   cccaaccttgacctgcagccacttccccctgggcttctcctgcaggttctccttctgctg 280
             ||| ||||||| || |||||| |||  ||||  ||||||||  || ||||| ||  ||||
Sbjct: 25816 cccgaccttgagctccagccatttcatcctgatcttctcctcaagattctctttacgctg 25875

                                                                         
Query: 281   ctggatcgtgccgtcggggaacttgagccggaggttcaccggcgtcgaccacccgtaggc 340
             |||||  || || || |||||||||||| | |||||||| ||    ||||||||||| ||
Sbjct: 25876 ctggactgttccatcagggaacttgagctgaaggttcactgggacagaccacccgtatgc 25935

                                                                         
Query: 341   cgggtcgtcgagcttcacctcgaagaagacctcgtaggtgactcctggcgtgagatggga 400
              || ||    ||| | || || ||||  ||||| |||||||||||||| || |||| |||
Sbjct: 25936 aggatcaataagcattacttcaaagagaacctcataggtgactcctggtgtaagatagga 25995

                                                            
Query: 401   cagctccagcttcccttggacctccagccagcagacgttctgcagcg 447
             | | || |||||||| |||| ||| | ||||||||||||||||||||
Sbjct: 25996 ccgttcaagcttcccatggatctctaaccagcagacgttctgcagcg 26042



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                
Query: 466   ccttccttctttcagggggtgccaagtccagtacttggggtcttcgctcca 516
             ||||||||||||||| || | |||||||||| |  |||||||||| |||||
Sbjct: 26191 ccttccttctttcagaggtttccaagtccagaatctggggtcttcactcca 26241

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>dbj|AK102322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090J07, full
           insert sequence
          Length = 944

 Score =  135 bits (68), Expect = 2e-28
 Identities = 279/348 (80%), Gaps = 1/348 (0%)
 Strand = Plus / Minus

                                                                       
Query: 101 tcattcttttgggatgatcttgatgcccttgataaggagccccctcttccactgcccacc 160
           ||||| ||||||||  |||||||| |||||||| || ||||| ||||||||| |||||||
Sbjct: 853 tcattgttttgggagaatcttgattcccttgattagtagccctctcttccacagcccacc 794

                                                                       
Query: 161 atcatactc-aaacatggagatctcaacctctccattctgccccttgtgcggcttaacct 219
           ||||||||| ||||||||| ||||||| |||||| ||||||||||  || |  || ||| 
Sbjct: 793 atcatactcaaaacatggatatctcaatctctcccttctgcccctgctgggttttcaccc 734

                                                                       
Query: 220 ccccaaccttgacctgcagccacttccccctgggcttctcctgcaggttctccttctgct 279
           |||| ||||||| || |||||| |||  ||||  ||||||||  || ||||| ||  |||
Sbjct: 733 ccccgaccttgagctccagccatttcatcctgatcttctcctcaagattctctttacgct 674

                                                                       
Query: 280 gctggatcgtgccgtcggggaacttgagccggaggttcaccggcgtcgaccacccgtagg 339
           ||||||  || || || |||||||||||| | |||||||| ||    ||||||||||| |
Sbjct: 673 gctggactgttccatcagggaacttgagctgaaggttcactgggacagaccacccgtatg 614

                                                                       
Query: 340 ccgggtcgtcgagcttcacctcgaagaagacctcgtaggtgactcctggcgtgagatggg 399
           | || ||    ||| | || || ||||  ||||| |||||||||||||| || |||| ||
Sbjct: 613 caggatcaataagcattacttcaaagagaacctcataggtgactcctggtgtaagatagg 554

                                                           
Query: 400 acagctccagcttcccttggacctccagccagcagacgttctgcagcg 447
           || | || |||||||| |||| ||| | ||||||||||||||||||||
Sbjct: 553 accgttcaagcttcccatggatctctaaccagcagacgttctgcagcg 506



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 467 cttccttctttcagggggtgccaagtccagtacttggggtcttcgctcca 516
           |||||||||||||| || | |||||||||| |  |||||||||| |||||
Sbjct: 467 cttccttctttcagaggtttccaagtccagaatctggggtcttcactcca 418

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>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0011G08
          Length = 139490

 Score =  133 bits (67), Expect = 6e-28
 Identities = 181/219 (82%)
 Strand = Plus / Plus

                                                                          
Query: 101    tcattcttttgggatgatcttgatgcccttgataaggagccccctcttccactgcccacc 160
              ||||| ||||||||  |||||||| |||||||| || ||||| ||||||||| |||||||
Sbjct: 139173 tcattgttttgggagaatcttgattcccttgattagtagccctctcttccacagcccacc 139232

                                                                          
Query: 161    atcatactcaaacatggagatctcaacctctccattctgccccttgtgcggcttaacctc 220
              |||||||||||||||||| ||||||| |||||| ||||||||||  || |  || |||||
Sbjct: 139233 atcatactcaaacatggatatctcaatctctcccttctgcccctgctgggttttcacctc 139292

                                                                          
Query: 221    cccaaccttgacctgcagccacttccccctgggcttctcctgcaggttctccttctgctg 280
              ||| ||||||| || |||||| |||  ||||  ||||||||  || ||||| ||  ||||
Sbjct: 139293 cccgaccttgagctccagccatttcatcctgatcttctcctcaagattctctttacgctg 139352

                                                     
Query: 281    ctggatcgtgccgtcggggaacttgagccggaggttcac 319
              |||||  || || || |||||||||||| | ||||||||
Sbjct: 139353 ctggactgttccatcagggaacttgagctgaaggttcac 139391

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>gb|AC005610.1| Homo sapiens chromosome 5, PAC clone 502L6 (LBNL H156), complete
             sequence
          Length = 223408

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 74    aacaaaacacaaccaaaaccaaa 96
             |||||||||||||||||||||||
Sbjct: 88380 aacaaaacacaaccaaaaccaaa 88402

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>gb|AC010626.6| Homo sapiens chromosome 5 clone CTD-2138K21, complete sequence
          Length = 160312

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 74     aacaaaacacaaccaaaaccaaa 96
              |||||||||||||||||||||||
Sbjct: 143035 aacaaaacacaaccaaaaccaaa 143057

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>dbj|AP006184.1| Sus scrofa CC chemokine receptor genes (CCR9, CXCR6, FYCO1), complete
              cds, clone: 0268F11
          Length = 141824

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 253    gcttctcctgcaggttctccttctgctgctg 283
              |||||||||||||| ||||||||| ||||||
Sbjct: 115254 gcttctcctgcaggctctccttctcctgctg 115284

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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 75     acaaaacacaaccaaaaccaaa 96
              ||||||||||||||||||||||
Sbjct: 901677 acaaaacacaaccaaaaccaaa 901656

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>emb|AL645907.9| Mouse DNA sequence from clone RP23-9N7 on chromosome 11 Contains the 5'
             end of a novel gene, a novel gene, the Clk4 gene for CDC
             like kinase 4, the 5' end of the Col23a1 gene for
             procollagen (type XXIII, alpha 1) and two CpG islands,
             complete sequence
          Length = 219268

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 225   accttgacctgcagccacttcc 246
             ||||||||||||||||||||||
Sbjct: 95793 accttgacctgcagccacttcc 95772

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>gb|DQ369998.1| HIV-1 isolate 04ZASK172B1 from South Africa, complete genome
          Length = 8821

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 254  cttctcctgcaggttctccttctgctgctggatc 287
            ||||| |||| || ||||||||||||||||||||
Sbjct: 8081 cttctgctgctggatctccttctgctgctggatc 8048

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>gb|AC126796.4| Mus musculus BAC clone RP23-384F19 from chromosome 10, complete
             sequence
          Length = 211025

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 74    aacaaaacacaaccaaaacca 94
             |||||||||||||||||||||
Sbjct: 16730 aacaaaacacaaccaaaacca 16710

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>emb|AL162424.20| Human DNA sequence from clone RP11-498E2 on chromosome 9 Contains the 5'
              end of the PTGS1 gene for prostaglandin-endoperoxide
              synthase 1 (prostaglandin G/H synthase and cyclooxygenase),
              the gene for mitochondrial ribosome recycling factor (MRRF)
              (RRF MRFF MTRRF), a novel gene (MGC2734), the LHX6 gene for
              LIM-homeobox protein 6, the 3' end of a novel gene
              (LOC254956) and five CpG islands, complete sequence
          Length = 223020

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 400    acagctccagcttcccttgga 420
              |||||||||||||||||||||
Sbjct: 166761 acagctccagcttcccttgga 166741

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>gb|AC125204.4| Mus musculus BAC clone RP23-237H8 from 10, complete sequence
          Length = 198473

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 74    aacaaaacacaaccaaaacca 94
             |||||||||||||||||||||
Sbjct: 34676 aacaaaacacaaccaaaacca 34696

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>gb|AF355464.1|AF355464 Oryctolagus cuniculus flavin-containing monooxygenase 1 (FMO1) gene,
            exons 0, 1, and 2, and partial cds
          Length = 6970

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 140  ccccctcttccactgcccaccatca 164
            ||||||||||||||| |||||||||
Sbjct: 5710 ccccctcttccactggccaccatca 5734

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>gb|AY085730.1| Arabidopsis thaliana clone 17437 mRNA, complete sequence
          Length = 989

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 312 aggttcaccggcgtcgaccacccgtaggccgggtcgtcgagcttcacctcgaagaagacc 371
           ||||||||||||||   ||| || |||||||| || || |||||||||| |||||  |||
Sbjct: 584 aggttcaccggcgtgtcccatccataggccggatcctctagcttcaccttgaagaccacc 525

                
Query: 372 tcgta 376
           |||||
Sbjct: 524 tcgta 520

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>gb|AC104038.9| Homo sapiens chromosome 11, clone RP11-746C23, complete sequence
          Length = 187648

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 75    acaaaacacaaccaaaaccaa 95
             |||||||||||||||||||||
Sbjct: 44384 acaaaacacaaccaaaaccaa 44364

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>emb|AL953872.7| Zebrafish DNA sequence from clone CH211-235H23, complete sequence
          Length = 164584

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 262    gcaggttctccttctgctgct 282
              |||||||||||||||||||||
Sbjct: 156586 gcaggttctccttctgctgct 156606

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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 319     ccggcgtcgaccacccgtaggccg 342
               |||||||||||||||||| |||||
Sbjct: 3293535 ccggcgtcgaccacccgtgggccg 3293512

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>gb|AC155713.14| Mus musculus 10 BAC RP24-117K18 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 156147

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     aaaacacaaccaaaaccaaa 96
              ||||||||||||||||||||
Sbjct: 133543 aaaacacaaccaaaaccaaa 133524

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>ref|XM_870543.1| PREDICTED: Bos taurus similar to Rho guanine nucleotide exchange
            factor (GEF) 17 (LOC540026), partial mRNA
          Length = 3192

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 143  cctcttccactgcccaccat 162
            ||||||||||||||||||||
Sbjct: 2684 cctcttccactgcccaccat 2703

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>gb|AC167241.2| Mus musculus BAC clone RP24-560M14 from chromosome 17, complete
             sequence
          Length = 184079

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    catgcatgaaactgatctta 38
             ||||||||||||||||||||
Sbjct: 47803 catgcatgaaactgatctta 47822

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>emb|AJ459965.1|ECA459965 Equus caballus CRISP3 gene for cysteine-rich secretory protein 3 and
             TPX1 gene for testis specific protein 1
          Length = 137520

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    aaatcattcattcttttggg 113
             ||||||||||||||||||||
Sbjct: 91965 aaatcattcattcttttggg 91984

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>ref|XM_806090.1| Trypanosoma cruzi strain CL Brener Unc104-like kinesin
           (Tc00.1047053510687.100) partial mRNA
          Length = 2196

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 495 agtacttggggtcttcgctc 514
           ||||||||||||||||||||
Sbjct: 734 agtacttggggtcttcgctc 753

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>gb|BC059305.1| Xenopus laevis hypothetical protein MGC68950, mRNA (cDNA clone
            MGC:68950 IMAGE:4959212), complete cds
          Length = 4785

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 257  ctcctgcaggttctccttctgctg 280
            ||||||||| ||||||||||||||
Sbjct: 1229 ctcctgcagcttctccttctgctg 1206

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>gb|AC112683.10| Mus musculus chromosome 17, clone RP23-332P1, complete sequence
          Length = 206979

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    catgcatgaaactgatctta 38
             ||||||||||||||||||||
Sbjct: 27804 catgcatgaaactgatctta 27785

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>gb|AC166559.2| Spironucleus vortens clone JGIBAWF-5H13, complete sequence
          Length = 31974

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 73    taacaaaacacaaccaaaaccaaa 96
             |||||||||||||||| |||||||
Sbjct: 28533 taacaaaacacaaccagaaccaaa 28556

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>gb|DQ472026.1| Nautilus macromphalus mitochondrion, complete genome
          Length = 16258

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   aacaaaacacaaccaaaacc 93
            ||||||||||||||||||||
Sbjct: 7602 aacaaaacacaaccaaaacc 7621

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>emb|AL445675.9| Human DNA sequence from clone RP11-498M14 on chromosome 1 Contains a CpG
              island, complete sequence
          Length = 171985

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     aaacacaaccaaaaccaaat 97
              ||||||||||||||||||||
Sbjct: 125485 aaacacaaccaaaaccaaat 125504

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>emb|AL365402.17| Human DNA sequence from clone RP11-445K1 on chromosome 1q31.1-31.3
              Contains the 3' end of the gene for DBCCR1-like (DBCCR1L),
              complete sequence
          Length = 190163

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 74     aacaaaacacaaccaaaaccaaatcatt 101
              ||||||||| ||||||||||||| ||||
Sbjct: 183027 aacaaaacaaaaccaaaaccaaaacatt 183054

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>gb|AF491081.1| Garmannia chiquita 12S ribosomal RNA gene, partial sequence;
           tRNA-Val gene, complete sequence; and 16S ribosomal RNA
           gene, partial sequence; mitochondrial genes for
           mitochondrial products
          Length = 2069

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 82  acaaccaaaaccaaatcatt 101
           ||||||||||||||||||||
Sbjct: 639 acaaccaaaaccaaatcatt 658

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>emb|AL078477.5|HSDJ259N9 Human DNA sequence from clone RP1-69B10 on chromosome 11p13 Contains a
             pseudogene similar to heterogeneous nuclear
             ribonucleoprotein, the gene for GA17 protein, ESTs, STSs,
             GSSs and a CpG island, complete sequence
          Length = 107652

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 211   gcttaacctccccaaccttgacct 234
             |||||||||||||| |||||||||
Sbjct: 80040 gcttaacctccccatccttgacct 80063

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>emb|Y07760.1|CAV1GENOM Canine adenovirus type 1 complete genome
          Length = 30536

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   aacctccccaaccttgacct 234
             ||||||||||||||||||||
Sbjct: 26708 aacctccccaaccttgacct 26727

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>gb|AC154328.2| Mus musculus BAC clone RP23-298N23 from chromosome 13, complete sequence
          Length = 182025

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     aacaaaacacaaccaaaacc 93
              ||||||||||||||||||||
Sbjct: 170641 aacaaaacacaaccaaaacc 170660

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>gb|AY834753.1| Cystobacter fuscus cystothiazole A gene cluster, complete sequence
          Length = 63876

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   ggatgatcttgatgcccttg 131
             ||||||||||||||||||||
Sbjct: 59668 ggatgatcttgatgcccttg 59687

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>gb|AC109604.8| Mus musculus strain 129Sv/CJ7 clone rp22-298k22, complete sequence
          Length = 139770

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    aacaaaacacaaccaaaacc 93
             ||||||||||||||||||||
Sbjct: 11403 aacaaaacacaaccaaaacc 11384

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>gb|AY034137.1| Rattus norvegicus aldehyde dehydrogenase gene, exons 3 through 13 and
            partial cds; nuclear gene for mitochondrial product
          Length = 13815

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 244  tccccctgggcttctcctgcaggt 267
            |||| |||||||||||||||||||
Sbjct: 8220 tccctctgggcttctcctgcaggt 8243

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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
              complete sequence
          Length = 1813164

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 223    caaccttgacctgcagccac 242
              ||||||||||||||||||||
Sbjct: 187675 caaccttgacctgcagccac 187694

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>gb|AC011631.6|AC011631 Homo sapiens, clone RP11-1I20, complete sequence
          Length = 158236

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 74     aacaaaacacaaccaaaaccaaatcatt 101
              ||||||||| ||||||||||||| ||||
Sbjct: 148763 aacaaaacaaaaccaaaaccaaaacatt 148736

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>gb|AC008068.4| Homo sapiens BAC clone RP11-334F17 from 2, complete sequence
          Length = 154036

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 74    aacaaaacacaaccaaaaccaaatcatt 101
             ||||||| ||||||||||||||| ||||
Sbjct: 12268 aacaaaaaacaaccaaaaccaaaacatt 12295

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>gb|AC011293.5|AC011293 Homo sapiens BAC clone RP11-75F5 from Y, complete sequence
          Length = 159722

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     aaacacaaccaaaaccaaat 97
              ||||||||||||||||||||
Sbjct: 128889 aaacacaaccaaaaccaaat 128908

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 338     ggccgggtcgtcgagcttcacctcgaag 365
               |||||||||||||||||| ||| |||||
Sbjct: 5732971 ggccgggtcgtcgagcttgaccccgaag 5732998

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>gb|AC087653.6| Homo sapiens chromosome 11, clone RP1-259N9, complete sequence
          Length = 138141

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 211   gcttaacctccccaaccttgacct 234
             |||||||||||||| |||||||||
Sbjct: 35336 gcttaacctccccatccttgacct 35359

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>gb|M60937.1|AECE2AA Canine adenovirus type 1 putative ORF1 (p-VIII) gene, partial cds;
            and putative ORF2 (E3), putative ORF3 (E3), and fiber
            protein genes, complete cds
          Length = 3317

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 215  aacctccccaaccttgacct 234
            ||||||||||||||||||||
Sbjct: 2174 aacctccccaaccttgacct 2193

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>emb|AL954697.15| Zebrafish DNA sequence from clone CH211-286K11 in linkage group 25,
             complete sequence
          Length = 134798

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    caaaaccaaatcattcattc 106
             ||||||||||||||||||||
Sbjct: 58572 caaaaccaaatcattcattc 58591

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>emb|AJ328806.1|HSA328806 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-MD24R
          Length = 748

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 ctgcaggttctccttctgct 279
           ||||||||||||||||||||
Sbjct: 297 ctgcaggttctccttctgct 316

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>ref|NM_210773.1| Eremothecium gossypii AFL131Wp (AFL131W), mRNA
          Length = 3570

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  caaccttgacctgcagccac 242
            ||||||||||||||||||||
Sbjct: 1020 caaccttgacctgcagccac 1039

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>gb|AC153866.6| Mus musculus 10 BAC RP23-350O24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 184984

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     aacaaaacacaaccaaaacc 93
              ||||||||||||||||||||
Sbjct: 173601 aacaaaacacaaccaaaacc 173620

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>gb|AC153920.5| Mus musculus 10 BAC RP23-82M21 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 129551

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    aaaacacaaccaaaaccaaa 96
             ||||||||||||||||||||
Sbjct: 61687 aaaacacaaccaaaaccaaa 61668

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>gb|AC078897.20| Mus musculus strain C57BL/6J chromosome 3 clone rp23-105k2, complete
              sequence
          Length = 200088

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     acaaaacacaaccaaaacca 94
              ||||||||||||||||||||
Sbjct: 110292 acaaaacacaaccaaaacca 110273

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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 355     tcacctcgaagaagacctcgtaggtgac 382
               |||||||||||||| |||||| ||||||
Sbjct: 1001529 tcacctcgaagaaggcctcgtcggtgac 1001502

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>gb|U55001.1|CAU55001 Canine adenovirus type 1 E1A protein, small T-antigen, large T-antigen,
             protein IX, IVa2 protein, DNA polymerase, pTP, 52-55K
             protein, pIIIa, penton base protein, pVII protein, pV
             protein, Mu peptide precursor, pVI protein, viral protein
             II, endoproteinase, E2A-DBP, 100 kD protein, L4-22kD
             protein, L4-33 kD protein, pVIII, virion component IV,
             U-exon, E4 orf5, E4 orf4, E4 orf3, E4 orf2, and E4 orf1
             genes, complete cds
          Length = 30288

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   aacctccccaaccttgacct 234
             ||||||||||||||||||||
Sbjct: 26425 aacctccccaaccttgacct 26444

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>emb|AL845156.5| Mouse DNA sequence from clone RP23-340F21 on chromosome 2, complete
            sequence
          Length = 118716

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 226  ccttgacctgcagccacttc 245
            ||||||||||||||||||||
Sbjct: 4697 ccttgacctgcagccacttc 4716


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,724,007
Number of Sequences: 3902068
Number of extensions: 4724007
Number of successful extensions: 120852
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120569
Number of HSP's gapped (non-prelim): 276
length of query: 520
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 497
effective length of database: 17,143,297,704
effective search space: 8520218958888
effective search space used: 8520218958888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result