>ref|NM_187764.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1140

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 58/62 (93%)
 Strand = Plus / Minus

                                                                       
Query: 333 aaagaagtcanggttctgtattgctcttgccangaaacccatcatctggagctgcttctg 392
           |||||||||| ||||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 702 aaagaagtcagggttctgcattgctcttgccaagaaacccatcatctggacctgcttctg 643

             
Query: 393 ct 394
           ||
Sbjct: 642 ct 641



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 39   tccttcactcagcagctcctcccagaagtc 68
            ||||||| |||| |||||||||||||||||
Sbjct: 1035 tccttcattcagaagctcctcccagaagtc 1006

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 58/62 (93%)
 Strand = Plus / Minus

                                                                           
Query: 333     aaagaagtcanggttctgtattgctcttgccangaaacccatcatctggagctgcttctg 392
               |||||||||| ||||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 3325594 aaagaagtcagggttctgcattgctcttgccaagaaacccatcatctggacctgcttctg 3325535

                 
Query: 393     ct 394
               ||
Sbjct: 3325534 ct 3325533



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 39      tccttcactcagcagctcctcccagaagtc 68
               ||||||| |||| |||||||||||||||||
Sbjct: 3325927 tccttcattcagaagctcctcccagaagtc 3325898

>gb|AY344489.1| Oryza sativa (japonica cultivar-group) heat shock factor RHSF7
           mRNA, complete cds
          Length = 1403

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 58/62 (93%)
 Strand = Plus / Minus

                                                                       
Query: 333 aaagaagtcanggttctgtattgctcttgccangaaacccatcatctggagctgcttctg 392
           |||||||||| ||||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 778 aaagaagtcagggttctgcattgctcttgccaagaaacccatcatctggacctgcttctg 719

             
Query: 393 ct 394
           ||
Sbjct: 718 ct 717



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 39   tccttcactcagcagctcctcccagaagtc 68
            ||||||| |||| |||||||||||||||||
Sbjct: 1111 tccttcattcagaagctcctcccagaagtc 1082

>gb|AC105729.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1607A12,
              complete sequence
          Length = 177327

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 58/62 (93%)
 Strand = Plus / Plus

                                                                          
Query: 333    aaagaagtcanggttctgtattgctcttgccangaaacccatcatctggagctgcttctg 392
              |||||||||| ||||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 103620 aaagaagtcagggttctgcattgctcttgccaagaaacccatcatctggacctgcttctg 103679

                
Query: 393    ct 394
              ||
Sbjct: 103680 ct 103681



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 39     tccttcactcagcagctcctcccagaagtc 68
              ||||||| |||| |||||||||||||||||
Sbjct: 103287 tccttcattcagaagctcctcccagaagtc 103316

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 58/62 (93%)
 Strand = Plus / Minus

                                                                           
Query: 333     aaagaagtcanggttctgtattgctcttgccangaaacccatcatctggagctgcttctg 392
               |||||||||| ||||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 3325705 aaagaagtcagggttctgcattgctcttgccaagaaacccatcatctggacctgcttctg 3325646

                 
Query: 393     ct 394
               ||
Sbjct: 3325645 ct 3325644



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 39      tccttcactcagcagctcctcccagaagtc 68
               ||||||| |||| |||||||||||||||||
Sbjct: 3326038 tccttcattcagaagctcctcccagaagtc 3326009

>dbj|AK066844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088J01, full
            insert sequence
          Length = 2272

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 58/62 (93%)
 Strand = Plus / Minus

                                                                        
Query: 333  aaagaagtcanggttctgtattgctcttgccangaaacccatcatctggagctgcttctg 392
            |||||||||| ||||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 1643 aaagaagtcagggttctgcattgctcttgccaagaaacccatcatctggacctgcttctg 1584

              
Query: 393  ct 394
            ||
Sbjct: 1583 ct 1582



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 39   tccttcactcagcagctcctcccagaagtc 68
            ||||||| |||| |||||||||||||||||
Sbjct: 1976 tccttcattcagaagctcctcccagaagtc 1947

>ref|NM_196523.1| Oryza sativa (japonica cultivar-group) putative auxin-induced
           protein (OSJNBa0006I13.10), mRNA
          Length = 1077

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 352 attgctcttgccangaaacccatcatctggagctgcttctgct 394
           ||||||||||||| ||| ||||||||||||| ||| |||||||
Sbjct: 641 attgctcttgccaagaaccccatcatctggacctgtttctgct 599

>gb|AY344488.1| Oryza sativa (japonica cultivar-group) heat shock factor RHSF6
           mRNA, complete cds
          Length = 1336

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 352 attgctcttgccangaaacccatcatctggagctgcttctgct 394
           ||||||||||||| ||| ||||||||||||| ||| |||||||
Sbjct: 675 attgctcttgccaagaaccccatcatctggacctgtttctgct 633

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 352      attgctcttgccangaaacccatcatctggagctgcttctgct 394
                ||||||||||||| ||| ||||||||||||| ||| |||||||
Sbjct: 14233314 attgctcttgccaagaaccccatcatctggacctgtttctgct 14233356

>gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb0006I13 chromosome 10,
              complete sequence
          Length = 142737

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                         
Query: 352    attgctcttgccangaaacccatcatctggagctgcttctgct 394
              ||||||||||||| ||| ||||||||||||| ||| |||||||
Sbjct: 105387 attgctcttgccaagaaccccatcatctggacctgtttctgct 105429

>dbj|AK072391.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077L03, full
            insert sequence
          Length = 2561

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 352  attgctcttgccangaaacccatcatctggagctgcttctgct 394
            ||||||||||||| ||| ||||||||||||| ||| |||||||
Sbjct: 1115 attgctcttgccaagaaccccatcatctggacctgtttctgct 1073

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 352      attgctcttgccangaaacccatcatctggagctgcttctgct 394
                ||||||||||||| ||| ||||||||||||| ||| |||||||
Sbjct: 14241556 attgctcttgccaagaaccccatcatctggacctgtttctgct 14241598

>ref|XM_638678.1| Dictyostelium discoideum hypothetical protein (DDB0167460), partial
           mRNA
          Length = 630

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 141 ttgaatgttcattgctaaattct 163
           |||||||||||||||||||||||
Sbjct: 202 ttgaatgttcattgctaaattct 180

>gb|AC124521.2| Mus musculus BAC clone RP23-395M9 from 5, complete sequence
          Length = 184380

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 140   cttgaatgttcattgctaaattc 162
             |||||||||||||||||||||||
Sbjct: 19436 cttgaatgttcattgctaaattc 19414

>gb|AC110259.17| Mus musculus chromosome 5, clone RP23-287A8, complete sequence
          Length = 230585

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 140   cttgaatgttcattgctaaattc 162
             |||||||||||||||||||||||
Sbjct: 35176 cttgaatgttcattgctaaattc 35198

>gb|AC116305.2| Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4,
              complete sequence
          Length = 413138

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 141    ttgaatgttcattgctaaattct 163
              |||||||||||||||||||||||
Sbjct: 277950 ttgaatgttcattgctaaattct 277972

>gb|AC134570.5| Mus musculus BAC clone RP24-252B18 from chromosome 18, complete sequence
          Length = 183551

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 38     ttccttcactcagcagctcctc 59
              ||||||||||||||||||||||
Sbjct: 111825 ttccttcactcagcagctcctc 111804

>gb|AC166836.3| Mus musculus BAC clone RP23-17O23 from chromosome 10, complete sequence
          Length = 202804

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     ctcggcctcaccgcagccct 97
              ||||||||||||||||||||
Sbjct: 184395 ctcggcctcaccgcagccct 184414

>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence
          Length = 2205233

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     gcctcatccctcattccttc 44
              ||||||||||||||||||||
Sbjct: 158687 gcctcatccctcattccttc 158706

>gb|AC159437.1| Trypanosoma brucei chromosome 7 clone RPCI93-29K4, complete sequence
          Length = 159858

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     gcctcatccctcattccttc 44
              ||||||||||||||||||||
Sbjct: 115258 gcctcatccctcattccttc 115239

>gb|AY674778.1| Thryallis longifolia NADH dehydrogenase subunit 1 gene, exons 2, 3
           and partial cds; mitochondrial
          Length = 1605

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 67  tcatcagtcagctcggcctc 86
           ||||||||||||||||||||
Sbjct: 806 tcatcagtcagctcggcctc 787

>gb|AY674774.1| Tetracoccus dioicus NADH dehydrogenase subunit 1 gene, exons 2, 3
           and partial cds; mitochondrial
          Length = 1617

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 67  tcatcagtcagctcggcctc 86
           ||||||||||||||||||||
Sbjct: 814 tcatcagtcagctcggcctc 795

>gb|AY674681.1| Dicella nucifera NADH dehydrogenase subunit 1 gene, exons 2, 3 and
           partial cds; mitochondrial
          Length = 1302

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 67  tcatcagtcagctcggcctc 86
           ||||||||||||||||||||
Sbjct: 799 tcatcagtcagctcggcctc 780

>gb|AY674675.1| Croton alabamensis var. alabamensis NADH dehydrogenase subunit 1
           gene, exons 2, 3 and partial cds; mitochondrial
          Length = 1600

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 65  agtcatcagtcagctcggcc 84
           ||||||||||||||||||||
Sbjct: 799 agtcatcagtcagctcggcc 780

>gb|AY674646.1| Androstachys johnsonii NADH dehydrogenase subunit 1 gene, exons 2,
           3 and partial cds; mitochondrial
          Length = 1613

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 67  tcatcagtcagctcggcctc 86
           ||||||||||||||||||||
Sbjct: 814 tcatcagtcagctcggcctc 795

>ref|XM_428479.1| PREDICTED: Gallus gallus similar to unnaemd protein product
            (LOC430928), partial mRNA
          Length = 1411

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 39   tccttcactcagcagctcct 58
            ||||||||||||||||||||
Sbjct: 996  tccttcactcagcagctcct 1015

>emb|CT009551.8| Pig DNA sequence from clone CH242-214G8 on chromosome 17, complete
            sequence
          Length = 239237

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 127  cccttcctgatcccttgaat 146
            ||||||||||||||||||||
Sbjct: 7104 cccttcctgatcccttgaat 7085

>gb|AC124522.4| Mus musculus BAC clone RP23-397A19 from chromosome 10, complete
            sequence
          Length = 196485

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 78   ctcggcctcaccgcagccct 97
            ||||||||||||||||||||
Sbjct: 9555 ctcggcctcaccgcagccct 9574

>emb|AL356266.9| Human DNA sequence from clone RP11-347N5 on chromosome 13 Contains a
             ribosomal protein L39 (RPL39) pseudogene and the 3' end of
             a novel gene, complete sequence
          Length = 105247

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   aaattctccagctctgaaaa 176
             ||||||||||||||||||||
Sbjct: 19351 aaattctccagctctgaaaa 19370

>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete
             sequence
          Length = 1877212

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     tccagctctagcatctcagc 26
             ||||||||||||||||||||
Sbjct: 53476 tccagctctagcatctcagc 53495

>gb|AC012614.8| Homo sapiens chromosome 5 clone CTB-30K1, complete sequence
          Length = 128501

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    gcctcatccctcattccttc 44
             ||||||||||||||||||||
Sbjct: 44770 gcctcatccctcattccttc 44751

>dbj|AK133409.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4933416C03 product:hypothetical protein,
           full insert sequence
          Length = 2193

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  ctcggcctcaccgcagccct 97
           ||||||||||||||||||||
Sbjct: 129 ctcggcctcaccgcagccct 148

>gb|AC010608.7| Homo sapiens chromosome 5 clone CTB-3M24, complete sequence
          Length = 210408

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 25  gcctcatccctcattccttc 44
           ||||||||||||||||||||
Sbjct: 638 gcctcatccctcattccttc 619

>dbj|AK051719.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130067J21 product:protein
            tyrosine phosphatase, receptor type, R, full insert
            sequence
          Length = 2515

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 78   ctcggcctcaccgcagccct 97
            ||||||||||||||||||||
Sbjct: 1308 ctcggcctcaccgcagccct 1289

>ref|NM_001033821.1| Mus musculus RIKEN cDNA 4933416C03 gene (4933416C03Rik), mRNA
          Length = 2193

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  ctcggcctcaccgcagccct 97
           ||||||||||||||||||||
Sbjct: 129 ctcggcctcaccgcagccct 148

>gb|AY530950.1| Zea mays putative zinc finger protein (Z438D03.1), unknown (Z438D03.5),
             epsilon-COP (Z438D03.6), putative kinase (Z438D03.7),
             unknown (Z438D03.25), and C1-B73 (Z438D03.27) genes,
             complete cds
          Length = 185988

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   cctcctcttcgttgggtaag 286
             ||||||||||||||||||||
Sbjct: 83489 cctcctcttcgttgggtaag 83470

>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 160     ttctccagctctgaaaattc 179
               ||||||||||||||||||||
Sbjct: 2639237 ttctccagctctgaaaattc 2639256

>gb|AC141469.4| Mus musculus BAC clone RP24-439P5 from 5, complete sequence
          Length = 183468

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 319    tggacaagctgganaaagaagtc 341
              ||||||||||||| |||||||||
Sbjct: 106301 tggacaagctggagaaagaagtc 106279


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,469,161
Number of Sequences: 3902068
Number of extensions: 3469161
Number of successful extensions: 76591
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76372
Number of HSP's gapped (non-prelim): 219
length of query: 408
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 386
effective length of database: 17,147,199,772
effective search space: 6618819111992
effective search space used: 6618819111992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)