>PROSC_MOUSE (Q9Z2Y8) Proline synthetase co-transcribed bacterial homolog|
           protein
          Length = 274

 Score =  166 bits (421), Expect = 5e-41
 Identities = 88/163 (53%), Positives = 117/163 (71%), Gaps = 4/163 (2%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLG-REPLKVMVQVNTSG 508
           WHF+GHLQ   V  L+A VPNL M+E V + K+A+ ++ +    G  EPLKVMVQ+NTSG
Sbjct: 91  WHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADKVNSSWQKKGPTEPLKVMVQINTSG 149

Query: 507 EESKSGIDPSKCVELAKHVKLACPNLILSGLMTIGM--KDYSSTPE-NFKALVNCKLEVC 337
           E+SK G+ PS+ + + +H+K +CP+L   GLMTIG    D S  P  +F+ L+  + E+C
Sbjct: 150 EDSKHGLLPSETIAVVEHIKASCPSLEFVGLMTIGSFGHDLSQGPNPDFQRLLTLRRELC 209

Query: 336 KALGIPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIFGPREY 208
           + LGIP EQ ELSMGMS DF+ AIE+GSTNVR+GSTIFG R+Y
Sbjct: 210 EKLGIPVEQVELSMGMSMDFQHAIEVGSTNVRIGSTIFGERDY 252

>PROSC_HUMAN (O94903) Proline synthetase co-transcribed bacterial homolog|
           protein
          Length = 275

 Score =  162 bits (410), Expect = 9e-40
 Identities = 86/163 (52%), Positives = 114/163 (69%), Gaps = 4/163 (2%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGR-EPLKVMVQVNTSG 508
           WHF+GHLQ   V  L+A VPNL M+E V + K+A+ ++ +    G  E LKVMVQ+NTSG
Sbjct: 91  WHFIGHLQKQNVNKLMA-VPNLFMLETVDSVKLADKVNSSWQRKGSPERLKVMVQINTSG 149

Query: 507 EESKSGIDPSKCVELAKHVKLACPNLILSGLMTIGM--KDYSSTPE-NFKALVNCKLEVC 337
           EESK G+ PS+ + + +H+   CPNL   GLMTIG    D S  P  +F+ L++ + E+C
Sbjct: 150 EESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELC 209

Query: 336 KALGIPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIFGPREY 208
           K L IP +Q ELSMGMS DF+ A+E+GSTNVR+GSTIFG R+Y
Sbjct: 210 KKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERDY 252

>YU68_CAEEL (P52057) Hypothetical UPF0001 protein F09E5.8 in chromosome II|
          Length = 244

 Score =  121 bits (303), Expect = 2e-27
 Identities = 74/167 (44%), Positives = 100/167 (59%), Gaps = 5/167 (2%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGRE--PLKVMVQVNTS 511
           WHF+G +QSNK+  +  + P L  VE V  EK A   D+     G    PL+V+VQVNTS
Sbjct: 79  WHFIGQVQSNKIGKICNS-PGLWCVETVETEKHARIFDKEWSKHGANLSPLRVLVQVNTS 137

Query: 510 GEESKSGIDPSKCVELAKHVKLACPNLILSGLMTIGMKDYS-STPEN--FKALVNCKLEV 340
           GE++K GI+  +  +LA+ ++  C NL   G MTIG  D S ++ EN  F+ L   +   
Sbjct: 138 GEDNKGGIEIGEAPKLAEFIRKECQNLKFDGFMTIGSFDNSHASGENPDFEKLFKVRQTW 197

Query: 339 CKALGIPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIFGPREYPNQ 199
            +  G   +  ELSMGMS DF QAI  G+T+VRVGS +FG REY N+
Sbjct: 198 AEQTGESADSVELSMGMSDDFLQAIHQGATSVRVGSKLFGAREYKNK 244

>Y461_VIBCH (Q9KUQ4) Hypothetical UPF0001 protein VC0461|
          Length = 236

 Score =  107 bits (266), Expect = 4e-23
 Identities = 68/161 (42%), Positives = 93/161 (57%), Gaps = 2/161 (1%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTSGE 505
           WHF+G LQSNK + +     + D V  +  EKIA  L      +   PL+V++QVNTSGE
Sbjct: 80  WHFIGPLQSNKTRLV---AEHFDWVHTIDREKIALRLSEQR-PVNMPPLQVLIQVNTSGE 135

Query: 504 ESKSGIDPSKCVELAKHVKLACPNLILSGLMTI--GMKDYSSTPENFKALVNCKLEVCKA 331
            SKSGI+P +   LA+ +    PNL L GLM+I   + DY +    F  L   + ++ + 
Sbjct: 136 ASKSGIEPQQLFTLAELIS-RLPNLTLRGLMSIPENVPDYPAQLAAFTQLAELQQQLAQK 194

Query: 330 LGIPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIFGPREY 208
                +   LSMGMSGD + AIE GST VR+G+ IFG R+Y
Sbjct: 195 Y---PQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDY 232

>YPI1_VIBAL (P52055) Hypothetical UPF0001 protein in pilT-proC intergenic|
           region (ORF1)
          Length = 233

 Score =  105 bits (261), Expect = 2e-22
 Identities = 69/161 (42%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTSGE 505
           WHF+G +QSNK + +     + D V  +   KIA  L+    S   +PL+V++QVNTSGE
Sbjct: 80  WHFIGPIQSNKSRLV---AEHFDWVHTIDRTKIAQRLNDQRPS-ELKPLQVLIQVNTSGE 135

Query: 504 ESKSGIDPSKCVELAKHVKLACPNLILSGLMTI--GMKDYSSTPENFKALVNCKLEVCKA 331
            SKSG+  ++  ELA+ +    PNL L GLM+I   + DY S    F+ L   K  +   
Sbjct: 136 ASKSGVTEAEVFELAELIS-RLPNLTLRGLMSIPANVSDYESQLHEFQKLATLKQTLEAQ 194

Query: 330 LGIPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIFGPREY 208
                E   LSMGMSGD   AIE GST VR+G+ IFG R+Y
Sbjct: 195 F---PEIDTLSMGMSGDMTAAIEAGSTMVRIGTAIFGARDY 232

>Y112_PASMU (Q9CPD5) Hypothetical UPF0001 protein PM0112|
          Length = 233

 Score =  100 bits (250), Expect = 3e-21
 Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 2/161 (1%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTSGE 505
           WHF+G LQSNK K +     + D ++ +  +KIA+ L+       ++PL V++Q+N S E
Sbjct: 77  WHFIGPLQSNKTKLV---AEHFDWMQTLDRKKIADRLNEQRPHY-KKPLNVLIQINISDE 132

Query: 504 ESKSGIDPSKCVELAKHVKLACPNLILSGLMTI-GMKDYSSTPENFKALVNCKLEVCKAL 328
           +SKSGI P++ ++LAK ++   P+L L GLM I    D  +T E     ++   E  K  
Sbjct: 133 DSKSGIQPNEMLDLAKQIQ-NLPHLCLRGLMAIPAPTDDLATQEQAFTQMHSLFEQLKQ- 190

Query: 327 GIPTEQFE-LSMGMSGDFEQAIELGSTNVRVGSTIFGPREY 208
            +P  Q + LSMGM+ D   AI+ GST VR+G+ IFG R+Y
Sbjct: 191 ALPDAQIDTLSMGMTDDMASAIQCGSTMVRIGTAIFGARDY 231

>Y090_HAEIN (P44506) UPF0001 protein HI0090|
          Length = 237

 Score =  100 bits (250), Expect = 3e-21
 Identities = 65/162 (40%), Positives = 97/162 (59%), Gaps = 3/162 (1%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTSGE 505
           WHF+G LQSNK + +     + D ++ +   KIA+ L+    +  + PL V++Q+N S E
Sbjct: 77  WHFIGPLQSNKTRLV---AEHFDWMQTLDRAKIADRLNEQRPT-NKAPLNVLIQINISDE 132

Query: 504 ESKSGIDPSKCVELAKHVKLACPNLILSGLMTI-GMKDYSSTPEN-FKALVNCKLEVCKA 331
           ESKSGI P + + LAKH++   P+L L GLM I    D  +  EN F+ ++    ++ + 
Sbjct: 133 ESKSGIQPEEMLTLAKHIE-NLPHLCLRGLMAIPAPTDNIAEQENAFRKMLELFEQLKQV 191

Query: 330 LGIPTEQFE-LSMGMSGDFEQAIELGSTNVRVGSTIFGPREY 208
           L  P +Q + LSMGM+ D   AI+ GST VR+G+ IFG R Y
Sbjct: 192 L--PNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNY 231

>Y274_AQUAE (O66631) Hypothetical UPF0001 protein aq_274|
          Length = 228

 Score = 92.8 bits (229), Expect = 9e-19
 Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 4/163 (2%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTSGE 505
           WHF+G LQ+NKVK L+  V    ++  +  + +A+ + +           V+++VN  GE
Sbjct: 75  WHFIGRLQTNKVKYLMGKVV---LIHSLDRKNLADEIQKRAFK-NNIVQDVLIEVNVGGE 130

Query: 504 ESKSGIDPSKCVELAKHVKLACPNLILSGLMTIGMKDYSSTPEN----FKALVNCKLEVC 337
           E+K G++P    EL ++  L  PN+ + GLMTI    Y   PE+    F+ L   + E+ 
Sbjct: 131 ETKGGVEPENLKELFEYT-LELPNVKVLGLMTI--PPYLENPEDVRPYFRKLRELRDELQ 187

Query: 336 KALGIPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIFGPREY 208
           +   +      LSMGMS DFE AIE G+T VR+G+ +FG R+Y
Sbjct: 188 REYNVALPH--LSMGMSHDFEVAIEEGATIVRIGTLLFGERKY 228

>YBD6_YEAST (P38197) Hypothetical UPF0001 protein YBL036c|
          Length = 257

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 68/170 (40%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLD--RAVVSLGREPLKVMVQVNTS 511
           WHF+G LQ+NK K L A VPNL  VE + + K A  L+  RA       P+   VQ+NTS
Sbjct: 88  WHFIGGLQTNKCKDL-AKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTS 146

Query: 510 GEESKSGID-PSKCVELAKH-VKLACPNLILSGLMTIGMKDYS--STPEN--FKALVNCK 349
            E+ KSG++  ++  E+    +   C  + L+GLMTIG  + S   + EN  F  LV  K
Sbjct: 147 HEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWK 206

Query: 348 LEVCKALGIPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIFGPREYPNQ 199
            ++    G      +LSMGMS DF +AI  G+  VR+G+ IFG R   N+
Sbjct: 207 KKIDAKFGT---SLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPPKNE 253

>Y394_PSEAE (P24562) Hypothetical UPF0001 protein PA0394|
          Length = 230

 Score = 88.6 bits (218), Expect = 2e-17
 Identities = 64/159 (40%), Positives = 82/159 (51%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTSGE 505
           WHF+G +QSNK + +     +   V  V   KIA  L     + G  PL V +QVN SGE
Sbjct: 76  WHFIGPIQSNKTRPI---AEHFQWVHSVDRLKIAQRLSEQRPA-GLPPLNVCLQVNVSGE 131

Query: 504 ESKSGIDPSKCVELAKHVKLACPNLILSGLMTIGMKDYSSTPENFKALVNCKLEVCKALG 325
            SKSG  P     LA+ VK   PNL L GLM I         ++       +L +   LG
Sbjct: 132 ASKSGCAPEDLPALAEAVK-QLPNLRLRGLMAIPEPTAERAAQHAAFARLRELLLDLNLG 190

Query: 324 IPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIFGPREY 208
           + T    LSMGMS D E AI  G+T VR+G+ +FG R+Y
Sbjct: 191 LDT----LSMGMSDDLEAAIGEGATWVRIGTALFGARDY 225

>Y395_HELPY (O25156) Hypothetical UPF0001 protein HP0395|
          Length = 222

 Score = 84.3 bits (207), Expect = 3e-16
 Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 9/163 (5%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTSGE 505
           WH +G LQ NK+ +LL+  P L  +  + + K+A  +++    LG   L  ++QVN++ E
Sbjct: 75  WHMIGSLQENKINALLSLKPAL--LHSLDSLKLALKIEKRCEILGVN-LNALLQVNSAYE 131

Query: 504 ESKSGIDPSKCVELAKHVKLACPNLILSGLMTIGM---------KDYSSTPENFKALVNC 352
           ESKSG+ P + +E+   +   C +L L GLM IG          K + +T + F  + N 
Sbjct: 132 ESKSGVVPEEALEIYSQISETCKHLKLKGLMCIGAHTDDEKEIEKSFITTKKLFDQIKNA 191

Query: 351 KLEVCKALGIPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIF 223
            +              LSMGMS DFE AI  G+  +R+GS +F
Sbjct: 192 SV--------------LSMGMSDDFELAIACGANLLRIGSFLF 220

>Y395_HELPJ (Q9ZKF2) Hypothetical UPF0001 protein jhp_0986|
          Length = 222

 Score = 84.0 bits (206), Expect = 4e-16
 Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 9/163 (5%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTSGE 505
           WH +G LQ NK+ +LL+  P L  +  + + K+A  +++    LG   L  ++QVN++ E
Sbjct: 75  WHMIGSLQENKINALLSLKPAL--LHSLDSLKLALKIEKRCEILGVN-LNALLQVNSAYE 131

Query: 504 ESKSGIDPSKCVELAKHVKLACPNLILSGLMTIGM---------KDYSSTPENFKALVNC 352
           ESKSG+ P + +E    +   C  L L GLM IG          K +++T + F  + N 
Sbjct: 132 ESKSGVVPEEALETYSQISETCKRLKLKGLMCIGAHTDDETKIEKSFTTTKKLFDQIKNA 191

Query: 351 KLEVCKALGIPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIF 223
            +              LSMGMS DFE AI  G+  +R+GS +F
Sbjct: 192 SV--------------LSMGMSDDFELAIACGANLLRIGSFLF 220

>YGGS_ECOLI (P67080) Hypothetical UPF0001 protein yggS|
          Length = 234

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 65/163 (39%), Positives = 86/163 (52%), Gaps = 4/163 (2%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHL-DRAVVSLGREPLKVMVQVNTSG 508
           WHF+G LQSNK + +     + D    +   +IA  L D+    L   PL V++Q+N S 
Sbjct: 79  WHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQRPAEL--PPLNVLIQINISD 133

Query: 507 EESKSGIDPSKCVELAKHVKLACPNLILSGLMTIGMKDYSSTPENFKALVNCKLEVCKAL 328
           E SKSGI  ++  ELA  V    P L L GLM I   + S     F+  V  ++ V  A 
Sbjct: 134 ENSKSGIQLAELDELAAAVA-ELPRLRLRGLMAIPAPE-SEYVRQFE--VARQMAVAFA- 188

Query: 327 GIPTEQFE---LSMGMSGDFEQAIELGSTNVRVGSTIFGPREY 208
           G+ T       LS+GMS D E AI  GST VR+G+ IFG R+Y
Sbjct: 189 GLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231

>YGGS_ECOL6 (P67081) Hypothetical UPF0001 protein yggS|
          Length = 234

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 65/163 (39%), Positives = 86/163 (52%), Gaps = 4/163 (2%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHL-DRAVVSLGREPLKVMVQVNTSG 508
           WHF+G LQSNK + +     + D    +   +IA  L D+    L   PL V++Q+N S 
Sbjct: 79  WHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQRPAEL--PPLNVLIQINISD 133

Query: 507 EESKSGIDPSKCVELAKHVKLACPNLILSGLMTIGMKDYSSTPENFKALVNCKLEVCKAL 328
           E SKSGI  ++  ELA  V    P L L GLM I   + S     F+  V  ++ V  A 
Sbjct: 134 ENSKSGIQLAELDELAAAVA-ELPRLRLRGLMAIPAPE-SEYVRQFE--VARQMAVAFA- 188

Query: 327 GIPTEQFE---LSMGMSGDFEQAIELGSTNVRVGSTIFGPREY 208
           G+ T       LS+GMS D E AI  GST VR+G+ IFG R+Y
Sbjct: 189 GLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231

>YGGS_ECO57 (P67082) Hypothetical UPF0001 protein yggS|
          Length = 234

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 65/163 (39%), Positives = 86/163 (52%), Gaps = 4/163 (2%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHL-DRAVVSLGREPLKVMVQVNTSG 508
           WHF+G LQSNK + +     + D    +   +IA  L D+    L   PL V++Q+N S 
Sbjct: 79  WHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQRPAEL--PPLNVLIQINISD 133

Query: 507 EESKSGIDPSKCVELAKHVKLACPNLILSGLMTIGMKDYSSTPENFKALVNCKLEVCKAL 328
           E SKSGI  ++  ELA  V    P L L GLM I   + S     F+  V  ++ V  A 
Sbjct: 134 ENSKSGIQLAELDELAAAVA-ELPRLRLRGLMAIPAPE-SEYVRQFE--VARQMAVAFA- 188

Query: 327 GIPTEQFE---LSMGMSGDFEQAIELGSTNVRVGSTIFGPREY 208
           G+ T       LS+GMS D E AI  GST VR+G+ IFG R+Y
Sbjct: 189 GLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231

>YLME_BACSU (O31727) Hypothetical UPF0001 protein ylmE|
          Length = 230

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 2/157 (1%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTSGE 505
           WHF+G LQS K KS++ +V  +  ++ +        L + +       ++  VQVNTS E
Sbjct: 74  WHFIGSLQSRKAKSVVNSVSYIHSLDRLS-------LAKEIEKRAEGTVRCFVQVNTSLE 126

Query: 504 ESKSGIDPSKCVELAKHVKLACPNLILSGLMTIG--MKDYSSTPENFKALVNCKLEVCKA 331
            SK G+   + +   + +     +++++GLMT+     D       F++L   + +V K 
Sbjct: 127 PSKHGMKKEEVIPFIQELS-GFEHILVAGLMTMAPLTDDQDQIRSCFRSLRELRDQVQKL 185

Query: 330 LGIPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIFG 220
                   ELSMGMS DFE AIE G+T +R+GS++ G
Sbjct: 186 NQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVG 222

>Y556_SYNY3 (P52056) Hypothetical UPF0001 protein slr0556|
          Length = 218

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 55/159 (34%), Positives = 80/159 (50%), Gaps = 2/159 (1%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTSGE 505
           WHF+G LQSNK + +   V N   +  V N  IA  LDR    L + P + ++Q+    +
Sbjct: 66  WHFIGRLQSNKARKV---VENFTYIHSVDNLAIAVKLDRIAEELNKFP-QGLLQIKLLPD 121

Query: 504 ESKSGIDPSKCVELAKHVKLACPNLILSGLMTIGMKDYSSTPEN--FKALVNCKLEVCKA 331
           E+KSG    +       ++L   NL + GLMTI     S       F  L N    + + 
Sbjct: 122 ENKSGWTREELKLDLPQLELL-KNLKICGLMTILPLGLSPGDRQLTFGELKNLATAINQQ 180

Query: 330 LGIPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIFGPR 214
             +     ELSMGMSGD+ +AI  G+T +R+G+ +FG R
Sbjct: 181 SSLSLT--ELSMGMSGDYPEAIAAGATMIRLGTILFGDR 217

>Y919_MYCLE (Q9CCE2) Hypothetical UPF0001 protein ML0919|
          Length = 257

 Score = 70.9 bits (172), Expect = 4e-12
 Identities = 56/164 (34%), Positives = 86/164 (52%), Gaps = 8/164 (4%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSL---GR--EPLKVMVQV 520
           WH VG +Q NKV+SL         ++ +   ++   LDRAV +    GR  +PL+V VQ+
Sbjct: 96  WHMVGQIQRNKVRSLAQWAHTAHSIDSL---QLVAALDRAVAAALAGGRREQPLQVYVQI 152

Query: 519 NTSGEESKSGID---PSKCVELAKHVKLACPNLILSGLMTIGMKDYSSTPENFKALVNCK 349
           +  G+ S+ G++   P     +   V+ +  +L L GLM  G+      P+  +A    +
Sbjct: 153 SLDGDISRGGVNVTAPGAVDRVCAQVEES-KSLELVGLM--GIPPLGWNPD--QAFEQLR 207

Query: 348 LEVCKALGIPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIFGP 217
           LE  + L    +   LS GMS DFE A++ GST VRVG+ + GP
Sbjct: 208 LEHRRVLRSHPDAIGLSAGMSNDFEIAVKHGSTCVRVGTALLGP 251

>Y2172_MYCBO (P67084) Hypothetical UPF0001 protein Mb2172c|
          Length = 258

 Score = 66.2 bits (160), Expect = 9e-11
 Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 8/165 (4%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSL-----GREPLKVMVQV 520
           WH VG +Q NK  SL         V+   + ++   LDRAVV+        E L+V VQV
Sbjct: 97  WHMVGRIQRNKAGSLARWAHTAHSVD---SSRLVTALDRAVVAALAEHRRGERLRVYVQV 153

Query: 519 NTSGEESKSGID---PSKCVELAKHVKLACPNLILSGLMTIGMKDYSSTPENFKALVNCK 349
           +  G+ S+ G+D   P     +   V+ +   L L GLM I   D+       +A    +
Sbjct: 154 SLDGDGSRGGVDSTTPGAVDRICAQVQES-EGLELVGLMGIPPLDWDPD----EAFDRLQ 208

Query: 348 LEVCKALGIPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIFGPR 214
            E  +   +      LS GMS D E A++ GST VRVG+ + GPR
Sbjct: 209 SEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253

>Y2148_MYCTU (P67083) Hypothetical UPF0001 protein Rv2148c/MT2207|
          Length = 258

 Score = 66.2 bits (160), Expect = 9e-11
 Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 8/165 (4%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSL-----GREPLKVMVQV 520
           WH VG +Q NK  SL         V+   + ++   LDRAVV+        E L+V VQV
Sbjct: 97  WHMVGRIQRNKAGSLARWAHTAHSVD---SSRLVTALDRAVVAALAEHRRGERLRVYVQV 153

Query: 519 NTSGEESKSGID---PSKCVELAKHVKLACPNLILSGLMTIGMKDYSSTPENFKALVNCK 349
           +  G+ S+ G+D   P     +   V+ +   L L GLM I   D+       +A    +
Sbjct: 154 SLDGDGSRGGVDSTTPGAVDRICAQVQES-EGLELVGLMGIPPLDWDPD----EAFDRLQ 208

Query: 348 LEVCKALGIPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIFGPR 214
            E  +   +      LS GMS D E A++ GST VRVG+ + GPR
Sbjct: 209 SEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253

>Y531_BUCAP (Q8K929) Hypothetical UPF0001 protein BUsg531|
          Length = 229

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 55/161 (34%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGRE----PLKVMVQVN 517
           WHF+G +QSNK K +     N D  + +  EKIA  L++      RE    P+ V++Q+N
Sbjct: 77  WHFIGKVQSNKTKII---AENFDWCQTIDREKIAILLNKY-----REKKSFPMNVLMQIN 128

Query: 516 TSGEESKSGIDPSKCVELAKHVKLACPNLILSGLMTIG--MKDYSSTPENFKALVNCKLE 343
            S E +K+GI      +LAK + L  PNL   G+M +    K      +N+K       E
Sbjct: 129 ISNEVTKNGICIKNYKKLAKTISL-MPNLNFRGIMMMPEVEKKMIKQNDNYKNGNFIFNE 187

Query: 342 VCKAL-GIPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIF 223
           + K    I T    LS+G S D E A+   S  +R+G  IF
Sbjct: 188 LKKEYQSIDT----LSLGTSFDIENALLFHSNMIRIGRFIF 224

>Y1368_DEIRA (Q9RUL6) Hypothetical UPF0001 protein DR1368|
          Length = 209

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 47/154 (30%), Positives = 71/154 (46%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTSGE 505
           WHF+G LQ NK+K L        +V  +     A  +  A    G+ P  ++ + N  GE
Sbjct: 70  WHFIGPLQRNKIKYLRGVT----LVHSIEEPWQAQAIADAAAEWGQAPAVLLQRHN--GE 123

Query: 504 ESKSGIDPSKCVELAKHVKLACPNLILSGLMTIGMKDYSSTPENFKALVNCKLEVCKALG 325
             K G+ P     + + V+     L + GLM   M  Y       +   +   +  + LG
Sbjct: 124 GQKHGVLPDDLPAVLREVRAT--GLEVRGLMA--MAPYDDEARAAQVFADTARQA-QDLG 178

Query: 324 IPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIF 223
           +     ELSMGMSGD+  A+  G+T VRVG ++F
Sbjct: 179 L----VELSMGMSGDYPLAVAAGATLVRVGRSLF 208

>Y2153_CORGL (O24748) Hypothetical UPF0001 protein Cgl2153/cg2364|
          Length = 221

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 7/164 (4%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAV-VSLGR-----EPLKVMVQ 523
           +H +G +QS K  S+         V  V +EKIA  L R V ++L R     + L   +Q
Sbjct: 64  FHMIGQIQSKKANSIARWAA---AVHSVDSEKIAEALGRGVALALDRGDRTSDELPCFIQ 120

Query: 522 VNTSGEESKSGIDPSKCVELAKHVKLACPNLILSGLMTIGMKDYSSTPENFKALVNCKLE 343
           ++  G+ S+ G   S+  +LA  +     +L   GLM +    +   PE  KA    + +
Sbjct: 121 LSLDGDPSRGGTPLSQVTQLADCIS-DTTHLRFEGLMCVPPLGWG--PE--KAFSQAR-D 174

Query: 342 VCKALGIPTEQ-FELSMGMSGDFEQAIELGSTNVRVGSTIFGPR 214
           V   L    ++  E S GMSGD   AI+ GST VRVG+ I G R
Sbjct: 175 VLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNR 218

>Y549_BUCAI (P57614) Hypothetical UPF0001 protein BU549|
          Length = 200

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 6/160 (3%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTSGE 505
           WHF+G +QSNK K +     N    + V  EKIA  L++        P+ V++Q+N   E
Sbjct: 52  WHFIGKIQSNKTKKI---AQNFSWCQTVDREKIAVLLNK-FRPKNLPPINVLIQINNLKE 107

Query: 504 -ESKSGIDPSKCVELAKHVKLACPNLILSGLMTI-----GMKDYSSTPENFKALVNCKLE 343
            ++   ID  +  ELA+ + L+ PNL L G+M +      + + +   E  K + N    
Sbjct: 108 LQNNRYIDQYQ--ELAQLI-LSMPNLNLRGIMAVPSIKTNVIENNLQYEKIKTIFNRFKR 164

Query: 342 VCKALGIPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIF 223
              ++        LS+G S D ++++   S  VR+G  IF
Sbjct: 165 QYSSVD------TLSLGTSVDIKESLLATSNMVRIGRNIF 198

>Y497_BUCBP (Q89A48) Hypothetical UPF0001 protein bbp_497|
          Length = 223

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
 Frame = -3

Query: 684 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDR-AVVSLGREPLKVMVQVNTSG 508
           WH++G +QSNK   +     N      + N+K A  L++    SL +  L  ++Q+N   
Sbjct: 74  WHYIGQIQSNKAHII---AKNFSWCHTITNKKTAVLLNKYRPYSLPK--LNTLIQINIRD 128

Query: 507 EESKSGIDPSKCVELAKHVKLACPNLILSGLMTIGM--KDYSSTPENFKALVNCKLEVCK 334
                  D     +LAK +  +  NL L G+M +      Y    +++K  ++   ++ K
Sbjct: 129 NTINIDDDIETIKQLAKTIN-SLDNLNLRGIMAMPYFKNTYLEQIQSYK-YIHLYFDILK 186

Query: 333 ALGIPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIF 223
                 +   +S+G S D + A+  GST +R+GS+IF
Sbjct: 187 KKYTYIDT--VSLGTSHDIQAALYSGSTLLRIGSSIF 221

>PHEA_FREDI (P05098) C-phycoerythrin alpha chain|
          Length = 164

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
 Frame = -3

Query: 594 EKIANHLDRAVVSLGREPLKVMVQVNTSGEESKSGIDPSKCVELAKH-VKLACPNLILSG 418
           EK+AN++D          +K    +N SGE + +    +KC    KH ++L   +L++ G
Sbjct: 42  EKLANNIDAVATEAYNACIKKYPYLNNSGEANSTDTFKAKCARDIKHYLRLIQYSLVVGG 101

Query: 417 LMTIGMKDYSSTPENFKALVNCKLEVCKALGIPTEQF 307
             T  + ++    +          EV +ALG+PT  +
Sbjct: 102 --TGPLDEWGIAGQR---------EVYRALGLPTAPY 127

>IDI2_SYNEL (Q8DJ26) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP|
           isomerase) (Isopentenyl pyrophosphate isomerase)
          Length = 351

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 4/149 (2%)
 Frame = -3

Query: 672 GHLQSNKVKSLLAAVPNLD-MVEGVGNEKIA-NHLDRAVV-SLGREPLKVMVQVNTSGEE 502
           G  Q+ ++   LA V     +V GVG++++   H + A   ++ RE   + +  N    +
Sbjct: 80  GTPQAGEINRRLARVAQQKGIVMGVGSQRVLLEHPEVATTFAIRREAPTIPLLANLGAVQ 139

Query: 501 SKSGIDPSKCVELAKHVKLACPNLILSGLMTIGMKDYSSTPENFKALVNCKLEVCKALGI 322
              G   S+C ++   V L   N ++  L  +     +    NFK L+     +C+AL +
Sbjct: 140 LNYGCGVSECQKI---VDLLEANALILHLNPLQEAVQTGGDRNFKGLLTKIGVLCRALPV 196

Query: 321 PTEQFELSMGMSGDF-EQAIELGSTNVRV 238
           P    E+  G+S +  +Q +++G   + V
Sbjct: 197 PVIVKEVGNGISAEVAKQLVDVGVAAIDV 225

>CLSPN_XENLA (Q9DF50) Claspin (xClaspin)|
          Length = 1285

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
 Frame = +2

Query: 242  LTFVLPSSIACSKSPDIPMDSSNCSVGIPRALQTSSLQFTSALKFSGVEE*SFIPIVMSP 421
            ++ ++PS   C+K+  + ++S+N     P  +   +   +SA K SG      +P+  S 
Sbjct: 728  ISSMIPSYQPCNKTTRVVINSNNLGFRSPSPVHFKTSFLSSASKSSGKMSEPSLPVEDSQ 787

Query: 422  DSIKFG---QASFTCLASSTHLEGSIPDFDSSPLV 517
            D        +AS+ C   ++  + S+ D   S L+
Sbjct: 788  DLYNASPEPKASYLCAGRNSQFQFSLEDDTQSQLL 822

>IMDH_HELPY (P56088) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP|
           dehydrogenase) (IMPDH) (IMPD)
          Length = 481

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 25/79 (31%), Positives = 39/79 (49%)
 Frame = -3

Query: 441 CPNLILSGLMTIGMKDYSSTPENFKALVNCKLEVCKALGIPTEQFELSMGMSGDFEQAIE 262
           C   I++G   +GM   S       A+ NC +EV     IP    +  +  SGD  +A+ 
Sbjct: 300 CTTRIVAG---VGMPQVS-------AIDNC-VEVASKFDIPVIA-DGGIRYSGDVAKALA 347

Query: 261 LGSTNVRVGSTIFGPREYP 205
           LG+++V +GS + G  E P
Sbjct: 348 LGASSVMIGSLLAGTEESP 366

>IMDH_HELPJ (Q9ZL14) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP|
           dehydrogenase) (IMPDH) (IMPD)
          Length = 481

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 25/79 (31%), Positives = 39/79 (49%)
 Frame = -3

Query: 441 CPNLILSGLMTIGMKDYSSTPENFKALVNCKLEVCKALGIPTEQFELSMGMSGDFEQAIE 262
           C   I++G   +GM   S       A+ NC +EV     IP    +  +  SGD  +A+ 
Sbjct: 300 CTTRIVAG---VGMPQVS-------AIDNC-VEVASKFDIPVIA-DGGIRYSGDVAKALA 347

Query: 261 LGSTNVRVGSTIFGPREYP 205
           LG+++V +GS + G  E P
Sbjct: 348 LGASSVMIGSLLAGTEESP 366

>TAL1_YEAST (P15019) Transaldolase (EC 2.2.1.2)|
          Length = 334

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = -3

Query: 594 EKIANHLDRAVVSLGREPLKVMVQVNTSGEESKSGIDPSKCVELAKHV 451
           E++ N +DR +V  G+E LK++    ++  +++   D    +E A+H+
Sbjct: 79  EQVENAVDRLLVEFGKEILKIVPGRVSTEVDARLSFDTQATIEKARHI 126

>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c|
           precursor
          Length = 943

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 2/130 (1%)
 Frame = +2

Query: 260 SSIACSKSPDIPMDSSNCSVGIPRALQT-SSLQF-TSALKFSGVEE*SFIPIVMSPDSIK 433
           SSI+ + S   P+ SSN +     A  T SS Q+ TS+L  S     + +    S  +  
Sbjct: 243 SSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATS 302

Query: 434 FGQASFTCLASSTHLEGSIPDFDSSPLVFTCTITFKGSLPKLTTARSR*LAIFSLPTPST 613
                 T + S+T    S     S     + T T   S P  +   +   +  S P  S 
Sbjct: 303 ASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSV 362

Query: 614 MSRFGTAASS 643
            S   T+ASS
Sbjct: 363 NSTTATSASS 372

>PHEA_PSEA9 (P29296) C-phycoerythrin alpha chain|
          Length = 164

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
 Frame = -3

Query: 594 EKIANHLDRAVVSLGREPLKVMVQVNTSGEESKSGIDPSKCVELAKH-VKLACPNLILSG 418
           EK+AN++D          +K    +N +GE + +    +KC    KH ++L   +L++ G
Sbjct: 42  EKLANNIDAVAKEAYNAAIKKYPYLNNAGEANSTDTFKAKCARDIKHYLRLIQYSLVVGG 101

Query: 417 LMTIGMKDYSSTPENFKALVNCKLEVCKALGIPTEQF 307
             T  + ++    +          EV ++LG+PT  +
Sbjct: 102 --TGPLDEWGIAGQR---------EVYRSLGLPTAPY 127

>FIG2_YEAST (P25653) Factor-induced gene 2 precursor (Cell wall adhesin FIG2)|
          Length = 1609

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
 Frame = +2

Query: 251  VLPSSIACSKSPDIPMDSSNCSVGIPRALQTSSLQFTSALKFSGVEE*SFIPIV------ 412
            +LPSS + S S   P  +S  S  +P    TSS   T+    S     S +P+       
Sbjct: 1277 LLPSSSSISASS--PSSTSLLSTSLPSPAFTSSTLPTATAVSSSTFIASSLPLSSKSSLS 1334

Query: 413  MSPDSIKFGQASFTCLASSTHLEGSIPDFDSSPLVFTCTI 532
            +SP S     + F+  +SS+    S+P    SP V T ++
Sbjct: 1335 LSPVSSSILMSQFSSSSSSSSSLASLPSLSISPTVDTVSV 1374

>PURA_NEIMB (Q9K012) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 432

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 411 TIGMKDYSSTPENFKALVNCKLEVCKA 331
           T G+KDY + PEN KA +    EVC A
Sbjct: 384 TFGVKDYGALPENAKAYLKRIEEVCGA 410

>THF1_SYNSC (Q3AJN7) Protein thf1|
          Length = 215

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 14/155 (9%)
 Frame = -3

Query: 681 HFVGH---LQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTS 511
           H + H    ++N++ S+         ++G   E   + L RA+ S        + +   S
Sbjct: 38  HLLSHQSRFEANELFSVGLCTVFDTFIKGYRPEAQTDALFRALCSSNGFDAAKLRKTYAS 97

Query: 510 GEESKSGIDPSKCVE-LAKHVKLACPNLILSGLMTIGMKDY------SSTPENFKALVNC 352
             E   G DP    + L+ H      +   S LM +G+          +T  + +A+V  
Sbjct: 98  LVEQAKGKDPESLKDWLSSHALKEGSHY--SRLMAVGLMSLLKAAAADATDSDTEAIVKQ 155

Query: 351 KLEVCKALGIPTEQFELSMGMSGD----FEQAIEL 259
             E+ + LG+PT++ E  + + G      +QA+EL
Sbjct: 156 SKELAEGLGLPTDRVEKDLTLFGSNSERMDQAVEL 190

>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)|
          Length = 5120

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 20/48 (41%), Positives = 23/48 (47%)
 Frame = -3

Query: 468 ELAKHVKLACPNLILSGLMTIGMKDYSSTPENFKALVNCKLEVCKALG 325
           E A   K++CP L  +GL  IG KD    P NF     CK  VC   G
Sbjct: 827 EKASQPKVSCP-LCKTGL-NIGSKD----PPNFNTCTECKKVVCNLCG 868

>YAD4_SCHPO (Q09830) Hypothetical protein C4G8.04 in chromosome I|
          Length = 772

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 215 LGPNIVDPTLTF-VLPSSIACSKSPDIPMDSSNCSVGIPRALQTSSLQFTSALK 373
           L P+ + P L    L  +++ S S D+P D ++ S       + SSL+ TS+LK
Sbjct: 185 LSPSSLVPLLKLPALDHAVSSSSSSDLPSDPNSASYIASSKQKASSLKLTSSLK 238


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,091,625
Number of Sequences: 219361
Number of extensions: 1868173
Number of successful extensions: 5113
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 4947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5071
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)