ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal31n23 |
|---|---|
| Clone Library Name | barley_pub |
>ACPS_ZYMMO (Q5NLS7) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)| (Holo-ACP synthase) (4'-phosphopantetheinyl transferase acpS) Length = 134 Score = 32.7 bits (73), Expect = 0.22 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = +1 Query: 223 ASKA*FSGRVGALTERRNVLMHSLSLFLQLRDRLISSLVDHPWEVLFHPVKPLP 384 A K SG+ L E + H+LS+ L L D DHPW + F ++ P Sbjct: 87 APKVNISGKAALLLEEKKPPRHTLSIHLSLSD-------DHPWALAFVVIEACP 133
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = -2 Query: 336 EAANQAIAELEEQRKRVHEYISALSK 259 E Q +AEL+EQ K VHE ++ALS+ Sbjct: 505 EERAQRLAELQEQLKAVHEQLAALSQ 530
>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic| chromosome-associated protein) (MCAP) Length = 1400 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = -2 Query: 336 EAANQAIAELEEQRKRVHEYISALSK 259 E Q +AEL+EQ K VHE ++ALS+ Sbjct: 506 EERAQRLAELQEQLKAVHEQLAALSQ 531
>ADH_DRONI (Q00672) Alcohol dehydrogenase (EC 1.1.1.1)| Length = 253 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 13/62 (20%) Frame = +1 Query: 202 PAYSQSPASKA*FSGRVGALTE-------------RRNVLMHSLSLFLQLRDRLISSLVD 342 P YS S A+ F+G + L + VL+H + +L + R+ L+D Sbjct: 148 PVYSASKAAALSFTGSIAKLAPITGVTAYSINPGITKTVLVHKFNSWLNVEPRVAELLLD 207 Query: 343 HP 348 HP Sbjct: 208 HP 209
>BRD3_MOUSE (Q8K2F0) Bromodomain-containing protein 3 (Bromodomain-containing| FSH-like protein FSRG2) Length = 726 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/21 (57%), Positives = 18/21 (85%) Frame = -2 Query: 318 IAELEEQRKRVHEYISALSKS 256 +AEL+EQ K VHE ++ALS++ Sbjct: 462 LAELQEQLKAVHEQLAALSQA 482
>BRD3_HUMAN (Q15059) Bromodomain-containing protein 3 (RING3-like protein)| Length = 726 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/21 (57%), Positives = 18/21 (85%) Frame = -2 Query: 318 IAELEEQRKRVHEYISALSKS 256 +AEL+EQ K VHE ++ALS++ Sbjct: 463 LAELQEQLKAVHEQLAALSQA 483
>CR3AA_BACTT (P0A379) Pesticidal crystal protein cry3Aa precursor (Insecticidal| delta-endotoxin CryIIIA(a)) (Crystaline entomocidal protoxin) (73 kDa crystal protein) Length = 644 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Frame = -2 Query: 384 REWFDRMEKYLPRMINE-AANQAIAELEEQRKRVHEYISALS 262 + + +++E + + I + A N+A+AEL+ + V +Y+SALS Sbjct: 107 KAFMEQVEALMDQKIADYAKNKALAELQGLQNNVEDYVSALS 148
>CR3AA_BACTM (P0A380) Pesticidal crystal protein cry3Aa precursor (Insecticidal| delta-endotoxin CryIIIA(a)) (Crystaline entomocidal protoxin) (73 kDa crystal protein) Length = 644 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Frame = -2 Query: 384 REWFDRMEKYLPRMINE-AANQAIAELEEQRKRVHEYISALS 262 + + +++E + + I + A N+A+AEL+ + V +Y+SALS Sbjct: 107 KAFMEQVEALMDQKIADYAKNKALAELQGLQNNVEDYVSALS 148
>CR3AA_BACTD (P0A381) Pesticidal crystal protein cry3Aa precursor (Insecticidal| delta-endotoxin CryIIIA(a)) (Crystaline entomocidal protoxin) (73 kDa crystal protein) Length = 644 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Frame = -2 Query: 384 REWFDRMEKYLPRMINE-AANQAIAELEEQRKRVHEYISALS 262 + + +++E + + I + A N+A+AEL+ + V +Y+SALS Sbjct: 107 KAFMEQVEALMDQKIADYAKNKALAELQGLQNNVEDYVSALS 148
>LIN52_CAEEL (Q10120) Protein lin-52 (Abnormal cell lineage protein 52)| Length = 161 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/45 (28%), Positives = 26/45 (57%) Frame = -2 Query: 363 EKYLPRMINEAANQAIAELEEQRKRVHEYISALSKSSDPS*KSCL 229 E ++ +MI + +N A++ EQ+K++ E + + S+P CL Sbjct: 16 EMFVQQMIEKKSNAEQAKMLEQQKKMLECTETMPEESEPVPMKCL 60
>YE14_SCHPO (O13869) Putative GTP-binding protein C1B3.04c| Length = 646 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -2 Query: 384 REWFDRMEKYLPRMINEAANQAIAELEEQRKRVHEYISALSKS 256 REW R++ +P+ + E QA+ + R E ISAL K+ Sbjct: 563 REWIQRLKPLVPKQLYEVILQAVI---DNRVVARESISALRKN 602
>PPCK_SULTO (Q972S7) Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 602 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -2 Query: 333 AANQAIAELEEQRKRVHEYISALSKSSDP 247 A + IAELE+Q++R+ +YI K P Sbjct: 570 APKEVIAELEQQKERILKYIDKYGKRISP 598
>RIR2_MACFA (Q4R7Q7) Ribonucleoside-diphosphate reductase M2 subunit (EC| 1.17.4.1) (Ribonucleotide reductase small subunit) (Ribonucleotide reductase small chain) Length = 389 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +1 Query: 79 PISKSQRIKLLPASKLPILSKGQTPPSILLQ*VKIVTSGATPAYSQSPA 225 PI+ Q+++L P L ++ K TPP+ L +++ S Q PA Sbjct: 10 PITNPQQLQLSPLKGLSLVDKENTPPA--LSGARVLASKTARRIFQEPA 56
>PARC_MYCGE (P47446) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 781 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +1 Query: 286 HSLSLFLQLRDRLISSLVDHPWEVLFH 366 H +S FLQ D+LI + DH + +FH Sbjct: 637 HLVSAFLQQDDKLICLVSDHNYYTVFH 663
>MYO3_SCHPO (O14157) Myosin type-2 heavy chain 2 (Myosin type II heavy chain 2)| Length = 2104 Score = 27.7 bits (60), Expect = 7.0 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +1 Query: 238 FSGRV-GALTERRNVLMH---SLSLFLQLRDRLISSLVDHPWEVLFHPVKPL 381 FS R+ G LT RR + ++ LQ R + L HPW LF +KPL Sbjct: 777 FSARIRGFLTRRRLYRFNHRQDAAILLQHNLRQLKLLKPHPWWNLFLHLKPL 828
>ESR1_SALSA (P50242) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| (Fragment) Length = 535 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +2 Query: 188 PQEQLQLIVNLQHLRHDFQEGSELLLS 268 P+ Q+QL++ L H+RH +G E L S Sbjct: 427 PRRQVQLLLLLSHIRHMSNKGMEHLYS 453
>CAC1E_RABIT (Q02343) Voltage-dependent R-type calcium channel alpha-1E subunit| (Voltage-gated calcium channel alpha subunit Cav2.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 6) (Brain calcium channel II) (BII) Length = 2259 Score = 27.7 bits (60), Expect = 7.0 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%) Frame = +1 Query: 115 ASKLPILSKGQTPPSILLQ*VKIVTSGATPAYSQSPASKA*FSGRVGALTERRNVLMHSL 294 A+ P +G + L + SG+ AY QS A +A + R+N + Sbjct: 8 AAGRPASGEGDSDQGRNLPGTPVPASGSAAAYKQSKAQRARTMALYNPIPVRQNCFTVNR 67 Query: 295 SLFLQLRDRLI----SSLVDHP 348 SLF+ D ++ L+D P Sbjct: 68 SLFIFGEDNIVRKYAKKLIDWP 89
>RNR_THEMA (Q9WZI1) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein| homolog) Length = 710 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -2 Query: 381 EWFDRMEKYLPRMINEAANQAIAELEEQRKRVHEYISALSK 259 E F + Y P ++ E + A+ EQRK+V E + L K Sbjct: 10 ERFILSDDYKPMVLKELYKKFRAKTREQRKKVREVVKKLEK 50 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,727,669 Number of Sequences: 219361 Number of extensions: 682715 Number of successful extensions: 2016 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1991 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2015 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
