ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal31n08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY965347.1| Triticum monococcum quinone reductase (QR1) mRNA, complete cds Length = 1329 Score = 391 bits (197), Expect = e-105 Identities = 278/306 (90%) Strand = Plus / Minus Query: 65 aagcatcgacgacaatcagctctccatctcaacaacaatcttaccagtggcatggccatc 124 |||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1139 aagcattgacgacgatcagctctccatctcaacgacaatcttaccagtggcatggccatc 1080 Query: 125 gatactgctttgccacgccttgcctgcgtcgctcaaggggaacctcgagtcgatcaccgt 184 ||||||||| |||||||||||| |||| |||||||| ||||| ||||||||| |||||| Sbjct: 1079 gatactgctctgccacgccttgtctgcctcgctcaacaggaacttcgagtcgaccaccgt 1020 Query: 185 cttcagcttgcctngctngagcagcccgaccaagaactccaggtccgccttgttgggcga 244 ||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||| Sbjct: 1019 cttcagcttgccttccttgagcaacccaaccaagaactccaggtccgccttgttgggcga 960 Query: 245 caggagcaggggcacgaggcgcttcttggagaacgtcacccagtgcagcgcagatgtgag 304 ||||||||||||||| |||||||||||||| || |||| || |||||||||||||||||| Sbjct: 959 caggagcaggggcaccaggcgcttcttggaaaatgtcatcctgtgcagcgcagatgtgag 900 Query: 305 gatggccgagaaattgggggtgatgtcnataactctcccggcgtcagtcagcaatggctg 364 |||||||||||| ||||||||||| || || |||| |||||| ||| | ||||||||||| Sbjct: 899 gatggccgagaagttgggggtgatatcgatcactcgcccggcatcactgagcaatggctg 840 Query: 365 gaaaga 370 |||||| Sbjct: 839 gaaaga 834
>ref|XM_472171.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1011 Score = 109 bits (55), Expect = 6e-21 Identities = 197/245 (80%) Strand = Plus / Minus Query: 87 tccatctcaacaacaatcttaccagtggcatggccatcgatactgctttgccacgccttg 146 ||||||||||| || ||||| || ||||| ||||| ||||| || | ||||||||||| Sbjct: 1004 tccatctcaacgactatcttgccggtggcgtggccgtcgatgctcttctgccacgccttc 945 Query: 147 cctgcgtcgctcaaggggaacctcgagtcgatcaccgtcttcagcttgcctngctngagc 206 | ||||||| || |||||||||||||| | ||||||| | ||||| ||| | | | Sbjct: 944 gccgcgtcgcccagcgggaacctcgagtccaccaccgtcctgagcttcccttcccccacc 885 Query: 207 agcccgaccaagaactccaggtccgccttgttgggcgacaggagcaggggcacgaggcgc 266 ||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| || ||| Sbjct: 884 agcccgaccaagaactccaggtcggccttgttcggcgacagcagcagcggcaccagccgc 825 Query: 267 ttcttggagaacgtcacccagtgcagcgcagatgtgaggatggccgagaaattgggggtg 326 ||| | ||||||| ||||||||| || ||||| ||||| ||||| ||||| ||| Sbjct: 824 ttccgccgcagcgtcaccgcgtgcagcgccgaggtgagcatggctgagaagttgggcgtg 765 Query: 327 atgtc 331 ||||| Sbjct: 764 atgtc 760
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 109 bits (55), Expect = 6e-21 Identities = 197/245 (80%) Strand = Plus / Minus Query: 87 tccatctcaacaacaatcttaccagtggcatggccatcgatactgctttgccacgccttg 146 ||||||||||| || ||||| || ||||| ||||| ||||| || | ||||||||||| Sbjct: 18181957 tccatctcaacgactatcttgccggtggcgtggccgtcgatgctcttctgccacgccttc 18181898 Query: 147 cctgcgtcgctcaaggggaacctcgagtcgatcaccgtcttcagcttgcctngctngagc 206 | ||||||| || |||||||||||||| | ||||||| | ||||| ||| | | | Sbjct: 18181897 gccgcgtcgcccagcgggaacctcgagtccaccaccgtcctgagcttcccttcccccacc 18181838 Query: 207 agcccgaccaagaactccaggtccgccttgttgggcgacaggagcaggggcacgaggcgc 266 ||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| || ||| Sbjct: 18181837 agcccgaccaagaactccaggtcggccttgttcggcgacagcagcagcggcaccagccgc 18181778 Query: 267 ttcttggagaacgtcacccagtgcagcgcagatgtgaggatggccgagaaattgggggtg 326 ||| | ||||||| ||||||||| || ||||| ||||| ||||| ||||| ||| Sbjct: 18181777 ttccgccgcagcgtcaccgcgtgcagcgccgaggtgagcatggctgagaagttgggcgtg 18181718 Query: 327 atgtc 331 ||||| Sbjct: 18181717 atgtc 18181713 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatataa 66 |||||||||||||||||||||| Sbjct: 33721091 ggacggagggagtactatataa 33721070 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 27370708 ggacggagggagtactatata 27370728 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 acggagggagtactatataa 66 |||||||||||||||||||| Sbjct: 22297448 acggagggagtactatataa 22297429
>emb|AL662979.3|OSJN00179 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0069D17, complete sequence Length = 147111 Score = 109 bits (55), Expect = 6e-21 Identities = 197/245 (80%) Strand = Plus / Minus Query: 87 tccatctcaacaacaatcttaccagtggcatggccatcgatactgctttgccacgccttg 146 ||||||||||| || ||||| || ||||| ||||| ||||| || | ||||||||||| Sbjct: 17631 tccatctcaacgactatcttgccggtggcgtggccgtcgatgctcttctgccacgccttc 17572 Query: 147 cctgcgtcgctcaaggggaacctcgagtcgatcaccgtcttcagcttgcctngctngagc 206 | ||||||| || |||||||||||||| | ||||||| | ||||| ||| | | | Sbjct: 17571 gccgcgtcgcccagcgggaacctcgagtccaccaccgtcctgagcttcccttcccccacc 17512 Query: 207 agcccgaccaagaactccaggtccgccttgttgggcgacaggagcaggggcacgaggcgc 266 ||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| || ||| Sbjct: 17511 agcccgaccaagaactccaggtcggccttgttcggcgacagcagcagcggcaccagccgc 17452 Query: 267 ttcttggagaacgtcacccagtgcagcgcagatgtgaggatggccgagaaattgggggtg 326 ||| | ||||||| ||||||||| || ||||| ||||| ||||| ||||| ||| Sbjct: 17451 ttccgccgcagcgtcaccgcgtgcagcgccgaggtgagcatggctgagaagttgggcgtg 17392 Query: 327 atgtc 331 ||||| Sbjct: 17391 atgtc 17387
>gb|AY235469.1| Triticum aestivum nonfunctional FCA-like protein (Fca-2C9) gene, exons 8 through 15, partial sequence Length = 3511 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagtactatataag 67 ||||||||||||||||||||||||||||| ||||| Sbjct: 764 acaagtatttccggacggagggagtactacataag 798 Score = 40.1 bits (20), Expect = 4.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 23 catttctagaacaagtatttccggacggagggagta 58 |||||||| |||||||||| |||||||||||||| Sbjct: 708 catttctacgacaagtattttgggacggagggagta 673
>gb|AY235468.1| Triticum aestivum FCA-like protein (Fca-2A3) gene, exons 8 through 15, partial cds Length = 3601 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagtactatataag 67 ||||||||||||||||||||||||||||| ||||| Sbjct: 806 acaagtatttccggacggagggagtactacataag 840 Score = 40.1 bits (20), Expect = 4.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 23 catttctagaacaagtatttccggacggagggagta 58 |||||||| |||||||||| |||||||||||||| Sbjct: 750 catttctacgacaagtattttgggacggagggagta 715
>gb|AY235467.1| Triticum aestivum FCA-like protein (Fca-1C5) gene, exons 8 through 15, partial cds Length = 3508 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagtactatataag 67 ||||||||||||||||||||||||||||| ||||| Sbjct: 747 acaagtatttccggacggagggagtactacataag 781 Score = 40.1 bits (20), Expect = 4.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 23 catttctagaacaagtatttccggacggagggagta 58 |||||||| |||||||||| |||||||||||||| Sbjct: 691 catttctacgacaagtattttgggacggagggagta 656
>gb|AY235466.1| Triticum aestivum FCA-like protein (Fca-1F10) gene, exons 8 through 15, partial cds Length = 3502 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagtactatataag 67 ||||||||||||||||||||||||||||| ||||| Sbjct: 751 acaagtatttccggacggagggagtactacataag 785 Score = 40.1 bits (20), Expect = 4.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 23 catttctagaacaagtatttccggacggagggagta 58 |||||||| |||||||||| |||||||||||||| Sbjct: 695 catttctacgacaagtattttgggacggagggagta 660
>gb|AY235463.1| Triticum aestivum nonfunctional FCA-like protein (Fca-2E11) gene, exons 8 through 15, partial sequence Length = 3592 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagtactatataag 67 ||||||||||||||||||||||||||||| ||||| Sbjct: 804 acaagtatttccggacggagggagtactacataag 838
>gb|AY235462.1| Triticum aestivum FCA-like protein (Fca-4C5) gene, exons 8 through 15, partial cds Length = 3585 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagtactatataag 67 ||||||||||||||||||||||||||||| ||||| Sbjct: 792 acaagtatttccggacggagggagtactacataag 826 Score = 40.1 bits (20), Expect = 4.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 23 catttctagaacaagtatttccggacggagggagta 58 |||||||| |||||||||| |||||||||||||| Sbjct: 736 catttctacgacaagtattttgggacggagggagta 701
>gb|AY235461.1| Triticum aestivum FCA-like protein (Fca-1B8) gene, exons 8 through 15, partial cds Length = 3631 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagtactatataag 67 ||||||||||||||||||||||||||||| ||||| Sbjct: 818 acaagtatttccggacggagggagtactacataag 852 Score = 40.1 bits (20), Expect = 4.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 23 catttctagaacaagtatttccggacggagggagta 58 |||||||| |||||||||| |||||||||||||| Sbjct: 762 catttctacgacaagtattttgggacggagggagta 727
>gb|AY235448.1| Triticum aestivum FCA-like protein (Fca-2G10) gene, exons 8 through 15, partial cds Length = 3610 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagtactatataag 67 ||||||||||||||||||||||||||||| ||||| Sbjct: 815 acaagtatttccggacggagggagtactacataag 849 Score = 40.1 bits (20), Expect = 4.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 23 catttctagaacaagtatttccggacggagggagta 58 |||||||| |||||||||| |||||||||||||| Sbjct: 759 catttctacgacaagtattttgggacggagggagta 724
>gb|AY235447.1| Triticum aestivum FCA-like protein (Fca-5H8) gene, exons 8 through 15, partial cds Length = 3524 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagtactatataag 67 ||||||||||||||||||||||||||||| ||||| Sbjct: 794 acaagtatttccggacggagggagtactacataag 828 Score = 40.1 bits (20), Expect = 4.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 23 catttctagaacaagtatttccggacggagggagta 58 |||||||| |||||||||| |||||||||||||| Sbjct: 738 catttctacgacaagtattttgggacggagggagta 703
>gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, genomic sequence Length = 103866 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagtacta 61 ||||||||||||||||||||||||||||| Sbjct: 93554 acaagtatttccggacggagggagtacta 93582 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 33 acaagtatttccggacggagggagtactata 63 |||||||||| |||||||||||||||||||| Sbjct: 93487 acaagtattttcggacggagggagtactata 93457 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 33 acaagtatttccggacggagggagta 58 |||||||||| ||||||||||||||| Sbjct: 37406 acaagtattttcggacggagggagta 37381 Score = 44.1 bits (22), Expect = 0.32 Identities = 28/30 (93%) Strand = Plus / Minus Query: 33 acaagtatttccggacggagggagtactat 62 |||||||||| ||||| ||||||||||||| Sbjct: 36514 acaagtattttcggacagagggagtactat 36485
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 56.0 bits (28), Expect = 8e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 23 catttctagaacaagtatttccggacggagggagta 58 ||||||||| ||||||||||| |||||||||||||| Sbjct: 31225 catttctaggacaagtatttctggacggagggagta 31190 Score = 48.1 bits (24), Expect = 0.020 Identities = 33/36 (91%) Strand = Plus / Plus Query: 23 catttctagaacaagtatttccggacggagggagta 58 ||||| ||| ||||||||||||| |||||||||||| Sbjct: 31270 catttttaggacaagtatttccgaacggagggagta 31305
>gb|AY235464.1| Triticum aestivum FCA-like protein (Fca-5A3) gene, exons 8 through 15, partial cds Length = 3593 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagtactatataag 67 |||||||||||||||||||||||||| || ||||| Sbjct: 809 acaagtatttccggacggagggagtattacataag 843 Score = 40.1 bits (20), Expect = 4.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 23 catttctagaacaagtatttccggacggagggagta 58 |||||||| |||||||||| |||||||||||||| Sbjct: 753 catttctacgacaagtattttgggacggagggagta 718
>emb|AJ459254.1|TAE459254 Triticum aestivum TAA1c gene for fatty acyl coA reductase Length = 2522 Score = 54.0 bits (27), Expect = 3e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 32 aacaagtatttccggacggagggagta 58 ||||||||||||||||||||||||||| Sbjct: 2237 aacaagtatttccggacggagggagta 2263
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 33 acaagtatttccggacggagggagta 58 |||||||||||||||||||||||||| Sbjct: 203647 acaagtatttccggacggagggagta 203622
>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1), and LRK19 (Lrk19) genes, complete cds Length = 35872 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 33 acaagtatttccggacggagggagta 58 |||||||||||||||||||||||||| Sbjct: 33649 acaagtatttccggacggagggagta 33624
>gb|AY963808.1| Triticum aestivum putative S-locus receptor kinase gene, partial cds; and mitochondrial Mn-superoxide dismutase (MnSOD) gene, complete cds, nuclear gene encoding mitochondrial protein Length = 11304 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagta 58 |||||||||||||||||||||||||| Sbjct: 10825 acaagtatttccggacggagggagta 10850 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 33 acaagtatttccggacggagggagta 58 |||||||||| ||||||||||||||| Sbjct: 10749 acaagtattttcggacggagggagta 10724
>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBb0004A05, complete sequence Length = 157913 Score = 50.1 bits (25), Expect = 0.005 Identities = 52/61 (85%) Strand = Plus / Minus Query: 232 ccttgttgggcgacaggagcaggggcacgaggcgcttcttggagaacgtcacccagtgca 291 |||| |||||| ||||| ||| |||||||| | |||||||||||| ||||||| ||||| Sbjct: 109968 ccttcttgggcatcaggatcagcggcacgagcctcttcttggagaaggtcaccctgtgca 109909 Query: 292 g 292 | Sbjct: 109908 g 109908 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 266 cttcttggagaacgtcacccagtgcagc 293 |||||||||||| ||||||| ||||||| Sbjct: 104668 cttcttggagaaggtcaccctgtgcagc 104641
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 50.1 bits (25), Expect = 0.005 Identities = 31/33 (93%) Strand = Plus / Minus Query: 33 acaagtatttccggacggagggagtactatata 65 ||||||||||||||||||||| |||| |||||| Sbjct: 9796 acaagtatttccggacggaggtagtaatatata 9764 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 27 tctagaacaagtatttccggacggagggagta 58 |||| |||||||||||||| ||||||| |||| Sbjct: 27377 tctaaaacaagtatttccgaacggaggtagta 27346
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 50.1 bits (25), Expect = 0.005 Identities = 52/61 (85%) Strand = Plus / Minus Query: 232 ccttgttgggcgacaggagcaggggcacgaggcgcttcttggagaacgtcacccagtgca 291 |||| |||||| ||||| ||| |||||||| | |||||||||||| ||||||| ||||| Sbjct: 19179037 ccttcttgggcatcaggatcagcggcacgagcctcttcttggagaaggtcaccctgtgca 19178978 Query: 292 g 292 | Sbjct: 19178977 g 19178977 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 266 cttcttggagaacgtcacccagtgcagc 293 |||||||||||| ||||||| ||||||| Sbjct: 19173650 cttcttggagaaggtcaccctgtgcagc 19173623
>dbj|AK108272.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-C04, full insert sequence Length = 1217 Score = 50.1 bits (25), Expect = 0.005 Identities = 52/61 (85%) Strand = Plus / Minus Query: 232 ccttgttgggcgacaggagcaggggcacgaggcgcttcttggagaacgtcacccagtgca 291 |||| |||||| ||||| ||| |||||||| | |||||||||||| ||||||| ||||| Sbjct: 908 ccttcttgggcatcaggatcagcggcacgagcctcttcttggagaaggtcaccctgtgca 849 Query: 292 g 292 | Sbjct: 848 g 848
>gb|AF548379.1| Aegilops tauschii isoamylase gene, complete cds Length = 9643 Score = 48.1 bits (24), Expect = 0.020 Identities = 33/36 (91%) Strand = Plus / Plus Query: 23 catttctagaacaagtatttccggacggagggagta 58 ||||||| |||||||| |||||||||||||||||| Sbjct: 6053 catttctgcaacaagtagttccggacggagggagta 6088
>gb|AC151955.2| Populus trichocarpa clone Pop1-041G20, complete sequence Length = 129953 Score = 46.1 bits (23), Expect = 0.080 Identities = 32/35 (91%) Strand = Plus / Plus Query: 96 acaacaatcttaccagtggcatggccatcgatact 130 ||||||||||| || || ||||||||||||||||| Sbjct: 14931 acaacaatcttccctgtagcatggccatcgatact 14965
>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence Length = 285506 Score = 46.1 bits (23), Expect = 0.080 Identities = 26/27 (96%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagtac 59 |||||||||||||||| |||||||||| Sbjct: 196687 acaagtatttccggacagagggagtac 196713 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 33 acaagtatttccggacggagggagta 58 ||||||||||| |||||||||||||| Sbjct: 196621 acaagtatttcaggacggagggagta 196596 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 33 acaagtatttccggacggagggagta 58 ||||||||||||||||||||| |||| Sbjct: 101870 acaagtatttccggacggaggaagta 101845
>gb|AC137924.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0095K08, complete sequence Length = 180999 Score = 46.1 bits (23), Expect = 0.080 Identities = 23/23 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatataag 67 ||||||||||||||||||||||| Sbjct: 132708 ggacggagggagtactatataag 132730
>gb|AC149298.1| Populus trichocarpa clone Pop1-021H24, complete sequence Length = 146635 Score = 46.1 bits (23), Expect = 0.080 Identities = 32/35 (91%) Strand = Plus / Minus Query: 96 acaacaatcttaccagtggcatggccatcgatact 130 ||||||||||| || || ||||||||||||||||| Sbjct: 20057 acaacaatcttccctgtagcatggccatcgatact 20023
>gb|AY533103.1| Triticum aestivum beta-expansin 1 (EXPB1) gene, complete cds Length = 1149 Score = 46.1 bits (23), Expect = 0.080 Identities = 26/27 (96%) Strand = Plus / Minus Query: 33 acaagtatttccggacggagggagtac 59 |||||||||| |||||||||||||||| Sbjct: 228 acaagtattttcggacggagggagtac 202 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagg 53 ||||||||||||||||||||| Sbjct: 304 acaagtatttccggacggagg 324
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 46.1 bits (23), Expect = 0.080 Identities = 26/27 (96%) Strand = Plus / Minus Query: 32 aacaagtatttccggacggagggagta 58 |||||||||||||| |||||||||||| Sbjct: 147600 aacaagtatttccgaacggagggagta 147574
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.080 Identities = 23/23 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatataag 67 ||||||||||||||||||||||| Sbjct: 7865240 ggacggagggagtactatataag 7865218 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 16391827 ggacggagggagtactatata 16391807 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 2840247 ggacggagggagtactatat 2840266
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.080 Identities = 23/23 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatataag 67 ||||||||||||||||||||||| Sbjct: 7935327 ggacggagggagtactatataag 7935305 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 16482843 ggacggagggagtactatata 16482823 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 2849278 ggacggagggagtactatat 2849297
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 33 acaagtatttccggacggagggagta 58 ||||||| |||||||||||||||||| Sbjct: 52163 acaagtaattccggacggagggagta 52138 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 33 acaagtatttccggacggagggagta 58 |||||||||||||||||| ||||||| Sbjct: 14609 acaagtatttccggacggggggagta 14584
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagta 58 ||||||| |||||||||||||||||| Sbjct: 69886 acaagtacttccggacggagggagta 69911 Score = 40.1 bits (20), Expect = 4.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 23 catttctagaacaagtatttccggacggagggagta 58 |||||||| |||| || |||||||||||||||||| Sbjct: 69830 catttctatgacaaataattccggacggagggagta 69795
>gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, complete sequence Length = 142018 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagta 58 ||||||||||||||||||||| |||| Sbjct: 113519 acaagtatttccggacggaggaagta 113544
>emb|CR626933.1| Triticum turgidum Length = 25216 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagta 58 |||||||||| ||||||||||||||| Sbjct: 8899 acaagtattttcggacggagggagta 8924
>emb|CR626929.1| Triticum aestivum Length = 20745 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagta 58 |||||||||| ||||||||||||||| Sbjct: 11613 acaagtattttcggacggagggagta 11638
>emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0015K02, complete sequence Length = 153623 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatataa 66 |||||||||||||||||||||| Sbjct: 71534 ggacggagggagtactatataa 71513
>gb|AF490468.1| Hordeum vulgare subsp. vulgare cultivar Morex CONSTANS-like protein (CO1) gene, complete cds Length = 4071 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatataa 66 |||||||||||||||||||||| Sbjct: 165 ggacggagggagtactatataa 186
>gb|AF022725.1|AF022725 Hordeum vulgare limit dextrinase (HvLD99) gene, complete cds Length = 12034 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagta 58 ||||||| |||||||||||||||||| Sbjct: 11602 acaagtaattccggacggagggagta 11627
>gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence Length = 181577 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatataa 66 |||||||||||||||||||||| Sbjct: 152269 ggacggagggagtactatataa 152248
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 46 gacggagggagtactatataagcatc 71 |||||||||||||||||||| ||||| Sbjct: 23676840 gacggagggagtactatatatgcatc 23676815 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 46 gacggagggagtactatataag 67 |||||||||||||||||||||| Sbjct: 77034 gacggagggagtactatataag 77013 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 5845407 ggacggagggagtactatat 5845388 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 1795731 ggacggagggagtactatat 1795750
>gb|AF459085.1| Hordeum vulgare SNF2P (Snf2P) gene, complete cds Length = 7963 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagta 58 ||||||| |||||||||||||||||| Sbjct: 1838 acaagtacttccggacggagggagta 1863 Score = 40.1 bits (20), Expect = 4.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 23 catttctagaacaagtatttccggacggagggagta 58 |||||||| |||| || |||||||||||||||||| Sbjct: 1782 catttctatgacaaataattccggacggagggagta 1747
>dbj|AP004643.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1113_A10 Length = 160089 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 46 gacggagggagtactatataagcatc 71 |||||||||||||||||||| ||||| Sbjct: 84436 gacggagggagtactatatatgcatc 84411
>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1147B12 Length = 127902 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 46 gacggagggagtactatataag 67 |||||||||||||||||||||| Sbjct: 77034 gacggagggagtactatataag 77013
>gb|AF122049.1|AF122049 Hordeum vulgare tissue-type aleurone limit dextrinase mRNA, complete cds Length = 3429 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 33 acaagtatttccggacggagggagta 58 ||||||| |||||||||||||||||| Sbjct: 3274 acaagtaattccggacggagggagta 3299
>gb|L41869.1|BLYBGQ6 Hordeum vulgare L. beta-glucosidase (BGQ60) gene, complete cds Length = 4152 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Minus Query: 33 acaagtatttccggacggagggagta 58 ||||||||||||||||| |||||||| Sbjct: 3039 acaagtatttccggacgaagggagta 3014
>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete sequence Length = 141691 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 11575 ggacggagggagtactatata 11555
>gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic sequence, complete sequence Length = 175704 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 471 ggacggagggagtactatata 491
>ref|XM_585060.2| PREDICTED: Bos taurus similar to Transmembrane emp24 domain containing protein 3 precursor (Membrane protein p24B) (LOC539132), mRNA Length = 1772 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 cgagtcgatcaccgtcttcag 190 ||||||||||||||||||||| Sbjct: 990 cgagtcgatcaccgtcttcag 970
>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057E15, complete sequence Length = 149035 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 32438 ggacggagggagtactatata 32418
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 24635389 ggacggagggagtactatata 24635369 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 13891005 ggacggagggagtactatata 13890985 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 ggacggagggagtactatataagc 68 |||||||||||||| ||||||||| Sbjct: 28615115 ggacggagggagtattatataagc 28615138 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 16890649 ggacggagggagtactatat 16890668 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 tatttccggacggagggagtacta 61 |||||| ||||||||||||||||| Sbjct: 10864333 tatttcgggacggagggagtacta 10864310
>gb|AC114011.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0078f20, complete sequence Length = 151042 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 132262 ggacggagggagtactatata 132242
>emb|CT025534.4| M.truncatula DNA sequence from clone MTH2-1H4 on chromosome 3, complete sequence Length = 100991 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 38 tatttccggacggagggagtactat 62 |||||| |||||||||||||||||| Sbjct: 92982 tatttcaggacggagggagtactat 92958
>gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1057D12, from chromosome 3, complete sequence Length = 161676 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 120477 ggacggagggagtactatata 120497
>emb|AL607006.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence Length = 141787 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 105304 ggacggagggagtactatata 105324
>gb|AC121239.34| Medicago truncatula clone mth1-8p19, complete sequence Length = 100985 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 38 tatttccggacggagggagtactat 62 |||||| |||||||||||||||||| Sbjct: 92983 tatttcaggacggagggagtactat 92959
>emb|AL731613.5|OSJN00257 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence Length = 133967 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 21862 ggacggagggagtactatata 21882
>gb|AF509746.1| Hordeum vulgare subsp. spontaneum OSU6 receptor-like kinase gene, complete cds Length = 2513 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 1323 ggacggagggagtactatata 1303
>gb|AF509745.1| Hordeum vulgare subsp. vulgare Steptoe receptor-like kinase gene, complete cds Length = 2550 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 1348 ggacggagggagtactatata 1328
>gb|AF509744.1| Hordeum vulgare subsp. vulgare Morex receptor-like kinase gene, complete cds Length = 4643 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 2049 ggacggagggagtactatata 2029
>gb|AC166286.14| Medicago truncatula clone mth2-173c1, complete sequence Length = 114609 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 gacggagggagtactatataa 66 ||||||||||||||||||||| Sbjct: 39939 gacggagggagtactatataa 39959
>gb|AC122145.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0034B05, complete sequence Length = 125655 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 38 tatttccggacggagggagtactatataa 66 ||||| ||||||||||||||| ||||||| Sbjct: 45382 tatttgcggacggagggagtattatataa 45410
>emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0025B02 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136470 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 67435 ggacggagggagtactatata 67415
>gb|AC097446.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0034B05, complete sequence Length = 175061 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 38 tatttccggacggagggagtactatataa 66 ||||| ||||||||||||||| ||||||| Sbjct: 160443 tatttgcggacggagggagtattatataa 160471
>gb|AC091665.3| Oryza sativa chromosome 10 clone OSJNBb0016M10, complete sequence Length = 118101 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 29923 ggacggagggagtactatata 29903
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 38 tatttccggacggagggagtactatataa 66 ||||| ||||||||||||||| ||||||| Sbjct: 3388598 tatttgcggacggagggagtattatataa 3388626 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 2848891 ggacggagggagtactatata 2848871
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 17712659 ggacggagggagtactatata 17712639 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 acggagggagtactatataa 66 |||||||||||||||||||| Sbjct: 23562090 acggagggagtactatataa 23562109
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 24552858 ggacggagggagtactatata 24552838 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 13885980 ggacggagggagtactatata 13885960 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 ggacggagggagtactatataagc 68 |||||||||||||| ||||||||| Sbjct: 28706439 ggacggagggagtattatataagc 28706462 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 16884222 ggacggagggagtactatat 16884241 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 tatttccggacggagggagtacta 61 |||||| ||||||||||||||||| Sbjct: 10862434 tatttcgggacggagggagtacta 10862411
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 19577667 ggacggagggagtactatata 19577647 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 47 acggagggagtactatataagcat 70 |||||||||||||||||| ||||| Sbjct: 21943675 acggagggagtactatattagcat 21943652 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 18864173 ggacggagggagtactatat 18864192 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 33 acaagtatttccggacggagggagtactatat 64 |||||||||| | |||||||||||||||||| Sbjct: 4101150 acaagtatttgggaacggagggagtactatat 4101119
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 41938614 ggacggagggagtactatata 41938594 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 37344807 ggacggagggagtactatata 37344827 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 24219250 ggacggagggagtactatat 24219231
>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431G06 Length = 140466 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 40691 ggacggagggagtactatata 40671
>gb|AY089179.1| Arabidopsis thaliana clone 6276 mRNA, complete sequence Length = 1184 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 102 atcttaccagtggcatggccatcgatact 130 ||||| ||||| ||||||||||||||||| Sbjct: 1050 atcttcccagtagcatggccatcgatact 1022
>gb|AF258609.1|AF258609 Aegilops tauschii starch synthase III gene, complete cds Length = 11550 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 cggagggagtactatataagc 68 ||||||||||||||||||||| Sbjct: 6629 cggagggagtactatataagc 6649
>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423B08 Length = 151490 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 56841 ggacggagggagtactatata 56861
>dbj|AP003951.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1288_C01 Length = 111223 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 90557 ggacggagggagtactatata 90537
>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0605D08 Length = 144340 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 43953 ggacggagggagtactatata 43933
>dbj|AK068180.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135E14, full insert sequence Length = 1603 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 453 ggacggagggagtactatata 433
>dbj|AK063301.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F03, full insert sequence Length = 2687 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 539 ggacggagggagtactatata 519
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 38 tatttccggacggagggagtactatataa 66 ||||| ||||||||||||||| ||||||| Sbjct: 3388519 tatttgcggacggagggagtattatataa 3388547 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatata 65 ||||||||||||||||||||| Sbjct: 2848842 ggacggagggagtactatata 2848822
>ref|NM_114473.4| Arabidopsis thaliana structural constituent of ribosome AT3G46040 mRNA, complete cds Length = 713 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 ctcaacaacaatcttaccag 111 |||||||||||||||||||| Sbjct: 282 ctcaacaacaatcttaccag 263
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 actccaggtccgccttgttg 239 |||||||||||||||||||| Sbjct: 161954 actccaggtccgccttgttg 161935
>gb|AC120529.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039N21, complete sequence Length = 151732 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 33653 ggacggagggagtactatat 33672
>gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence Length = 159632 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 120054 ggacggagggagtactatat 120073
>ref|NM_052897.3| Homo sapiens methyl-CpG binding domain protein 6 (MBD6), mRNA Length = 4214 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 236 gttgggcgacaggagcaggggcacgagg 263 |||||| ||||||||||||||| ||||| Sbjct: 1416 gttgggggacaggagcaggggcccgagg 1389
>gb|AC168204.1| Medicago truncatula chromosome 7 BAC clone mth2-64h15, complete sequence Length = 45758 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 acggagggagtactatataa 66 |||||||||||||||||||| Sbjct: 18436 acggagggagtactatataa 18455
>gb|AC124951.19| Medicago truncatula clone mth2-7p23, complete sequence Length = 124973 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 1006 ggacggagggagtactatat 1025
>gb|AC136974.11| Medicago truncatula clone mth2-22e9, complete sequence Length = 124037 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 acggagggagtactatataa 66 |||||||||||||||||||| Sbjct: 5355 acggagggagtactatataa 5336
>gb|AC140720.21| Medicago truncatula clone mth2-17l10, complete sequence Length = 122940 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 78394 ggacggagggagtactatat 78413
>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05, from chromosome 3, complete sequence Length = 127348 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 tatttccggacggagggagtacta 61 |||||| ||||||||||||||||| Sbjct: 116696 tatttcgggacggagggagtacta 116719
>gb|AY091373.1| Arabidopsis thaliana putative cytoplasmic ribosomal protein S15a (At3g46040) mRNA, complete cds Length = 424 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 ctcaacaacaatcttaccag 111 |||||||||||||||||||| Sbjct: 192 ctcaacaacaatcttaccag 173
>gb|AY045837.1| Arabidopsis thaliana putative cytoplasmic ribosomal protein S15a (At3g46040) mRNA, complete cds Length = 723 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 ctcaacaacaatcttaccag 111 |||||||||||||||||||| Sbjct: 285 ctcaacaacaatcttaccag 266
>emb|AL355775.1|ATF12M12 Arabidopsis thaliana DNA chromosome 3, BAC clone F12M12 Length = 106730 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 ctcaacaacaatcttaccag 111 |||||||||||||||||||| Sbjct: 365 ctcaacaacaatcttaccag 346
>emb|AJ440489.1|UBA440489 Uncultured bacterium partial mRNA for nitrite reductase (nirS gene), clone HNIS-13 Length = 839 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 gatcaccgtcttcagcttgc 195 |||||||||||||||||||| Sbjct: 815 gatcaccgtcttcagcttgc 796
>emb|AJ440483.1|UBA440483 Uncultured bacterium partial mRNA for nitrite reductase (nirS gene), clone HNIS-6 Length = 839 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 gatcaccgtcttcagcttgc 195 |||||||||||||||||||| Sbjct: 815 gatcaccgtcttcagcttgc 796
>gb|BC065530.1| Homo sapiens methyl-CpG binding domain protein 6, mRNA (cDNA clone MGC:70424 IMAGE:6152748), complete cds Length = 4166 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 236 gttgggcgacaggagcaggggcacgagg 263 |||||| ||||||||||||||| ||||| Sbjct: 1416 gttgggggacaggagcaggggcccgagg 1389
>emb|CR931735.1| Medicago truncatula chromosome 5 clone mth2-37f4, COMPLETE SEQUENCE Length = 114414 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 gagggagtactatataagca 69 |||||||||||||||||||| Sbjct: 5758 gagggagtactatataagca 5739
>gb|DQ374070.1| Beta vulgaris chromosome 9 clone BAC137 genomic sequence Length = 4617 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 775 ggacggagggagtactatat 756
>dbj|AK093078.1| Homo sapiens cDNA FLJ35759 fis, clone TESTI2004737 Length = 2450 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 236 gttgggcgacaggagcaggggcacgagg 263 |||||| ||||||||||||||| ||||| Sbjct: 311 gttgggggacaggagcaggggcccgagg 284
>dbj|AK056399.1| Homo sapiens cDNA FLJ31837 fis, clone NT2RP7000069, weakly similar to MUCIN 1 PRECURSOR Length = 3592 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 236 gttgggcgacaggagcaggggcacgagg 263 |||||| ||||||||||||||| ||||| Sbjct: 1450 gttgggggacaggagcaggggcccgagg 1423
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 gtgaggatggccgagaaatt 319 |||||||||||||||||||| Sbjct: 1078306 gtgaggatggccgagaaatt 1078325
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 acggagggagtactatataa 66 |||||||||||||||||||| Sbjct: 25790658 acggagggagtactatataa 25790639
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 1010730 ggacggagggagtactatat 1010749
>emb|BX822905.1|CNS0A61U Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB71ZE01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 639 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 ctcaacaacaatcttaccag 111 |||||||||||||||||||| Sbjct: 241 ctcaacaacaatcttaccag 222
>emb|BX822473.1|CNS0A5UQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB3ZF02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 686 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 ctcaacaacaatcttaccag 111 |||||||||||||||||||| Sbjct: 271 ctcaacaacaatcttaccag 252
>emb|BX825952.1|CNS0A561 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL75ZF04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 685 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 ctcaacaacaatcttaccag 111 |||||||||||||||||||| Sbjct: 255 ctcaacaacaatcttaccag 236
>emb|BX822971.1|CNS0A4PO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB78ZA01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 481 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 ctcaacaacaatcttaccag 111 |||||||||||||||||||| Sbjct: 122 ctcaacaacaatcttaccag 103
>emb|BX841733.1|CNS09YIV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL54ZE09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 635 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ctcaacaacaatcttaccag 111 |||||||||||||||||||| Sbjct: 361 ctcaacaacaatcttaccag 380
>gb|AC022506.38| Homo sapiens 12 BAC RP11-181L23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172136 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 236 gttgggcgacaggagcaggggcacgagg 263 |||||| ||||||||||||||| ||||| Sbjct: 81926 gttgggggacaggagcaggggcccgagg 81953
>gb|AC090882.10| Oryza sativa chromosome 3 BAC OSJNBa0014G15 genomic sequence, complete sequence Length = 158839 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 45 ggacggagggagtactatataagc 68 |||||||||||||| ||||||||| Sbjct: 83781 ggacggagggagtattatataagc 83758
>dbj|AP003810.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1119_A04 Length = 128906 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 115077 ggacggagggagtactatat 115096
>dbj|AP005442.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0073I05 Length = 182291 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 32517 ggacggagggagtactatat 32498
>dbj|AP005250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0009H02 Length = 155388 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 78092 ggacggagggagtactatat 78111
>dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0046B10 Length = 142596 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 43814 ggacggagggagtactatat 43795
>dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0481H08 Length = 146841 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 acggagggagtactatataa 66 |||||||||||||||||||| Sbjct: 43054 acggagggagtactatataa 43073
>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_E05 Length = 116305 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 33 acaagtatttccggacggagggagtactatat 64 |||||||||| | |||||||||||||||||| Sbjct: 11164 acaagtatttgggaacggagggagtactatat 11133
>dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0073A21 Length = 170051 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 33 acaagtatttccggacggagggagtactatat 64 |||||||||| | |||||||||||||||||| Sbjct: 147816 acaagtatttgggaacggagggagtactatat 147785
>dbj|AP005845.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0461D06 Length = 112895 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 27706 ggacggagggagtactatat 27725
>dbj|AP005114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0689H05 Length = 135803 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 47 acggagggagtactatataagcat 70 |||||||||||||||||| ||||| Sbjct: 126960 acggagggagtactatattagcat 126937
>dbj|AP004589.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0556A11 Length = 138096 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 99552 ggacggagggagtactatat 99533
>dbj|AK109203.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-C05, full insert sequence Length = 621 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 266 cttcttggagaacgtcacccagtgcagc 293 |||||||||||| ||||||| ||||||| Sbjct: 340 cttcttggagaaggtcaccctgtgcagc 313
>dbj|AP004262.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0022B05 Length = 151317 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 8318 ggacggagggagtactatat 8337
>emb|CR962132.2| Medicago truncatula chromosome 5 clone mte1-33l16, COMPLETE SEQUENCE Length = 47783 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 gagggagtactatataagca 69 |||||||||||||||||||| Sbjct: 32190 gagggagtactatataagca 32171
>emb|CT573028.11| M.truncatula DNA sequence from clone MTH2-51N20 on chromosome 3, complete sequence Length = 116350 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 94388 ggacggagggagtactatat 94369
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 acggagggagtactatataa 66 |||||||||||||||||||| Sbjct: 25718834 acggagggagtactatataa 25718815
>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137492 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 acggagggagtactatataa 66 |||||||||||||||||||| Sbjct: 12109 acggagggagtactatataa 12090
>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 167131 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 acggagggagtactatataa 66 |||||||||||||||||||| Sbjct: 157896 acggagggagtactatataa 157877
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 acggagggagtactatataa 66 |||||||||||||||||||| Sbjct: 48350 acggagggagtactatataa 48331
>dbj|AP006423.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT23C14, TM0311, complete sequence Length = 82652 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggacggagggagtactatat 64 |||||||||||||||||||| Sbjct: 72736 ggacggagggagtactatat 72755
>emb|AL845285.5| Mouse DNA sequence from clone RP23-167M2 on chromosome 2, complete sequence Length = 143280 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 aggaacaaacatttctagaa 33 |||||||||||||||||||| Sbjct: 6528 aggaacaaacatttctagaa 6547
>dbj|AB067474.1| Homo sapiens mRNA for KIAA1887 protein, partial cds Length = 3819 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 236 gttgggcgacaggagcaggggcacgagg 263 |||||| ||||||||||||||| ||||| Sbjct: 1085 gttgggggacaggagcaggggcccgagg 1058 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,692,662 Number of Sequences: 3902068 Number of extensions: 2692662 Number of successful extensions: 64691 Number of sequences better than 10.0: 132 Number of HSP's better than 10.0 without gapping: 152 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60246 Number of HSP's gapped (non-prelim): 4442 length of query: 370 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 348 effective length of database: 17,147,199,772 effective search space: 5967225520656 effective search space used: 5967225520656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
