ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal31n04 |
|---|---|
| Clone Library Name | barley_pub |
>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 235 Score = 137 bits (344), Expect = 9e-33 Identities = 66/72 (91%), Positives = 66/72 (91%) Frame = -1 Query: 346 GVLFLYIXGWIGWVXRSYLIXVSGEKKPAMREIIXDVELAARIIPRGFIWPXPAYRELIN 167 GVLFLYI GWIGWV RSYLI VSGEKKPAMREII DVELAARIIPRGFIWP AYRELIN Sbjct: 164 GVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELIN 223 Query: 166 GDLVVDDADIGY 131 GDLVVDDADIGY Sbjct: 224 GDLVVDDADIGY 235
>PSAF_SPIOL (P12355) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 231 Score = 94.4 bits (233), Expect = 6e-20 Identities = 42/64 (65%), Positives = 50/64 (78%) Frame = -1 Query: 346 GVLFLYIXGWIGWVXRSYLIXVSGEKKPAMREIIXDVELAARIIPRGFIWPXPAYRELIN 167 G+LFLYI GWIGWV RSYLI + EKKP +EII DV LA+ ++ RGF WP AYREL+N Sbjct: 164 GILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLN 223 Query: 166 GDLV 155 G+LV Sbjct: 224 GELV 227
>PSAF_FLATR (P46486) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 232 Score = 92.8 bits (229), Expect = 2e-19 Identities = 40/64 (62%), Positives = 49/64 (76%) Frame = -1 Query: 346 GVLFLYIXGWIGWVXRSYLIXVSGEKKPAMREIIXDVELAARIIPRGFIWPXPAYRELIN 167 G+LFLYI GWIGWV RSYLI + EKKP +EII DV LA +++ RGF WP AYRE +N Sbjct: 165 GILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLN 224 Query: 166 GDLV 155 G+L+ Sbjct: 225 GELI 228
>PSAF_PORPU (P51193) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 79.3 bits (194), Expect = 2e-15 Identities = 35/70 (50%), Positives = 46/70 (65%) Frame = -1 Query: 346 GVLFLYIXGWIGWVXRSYLIXVSGEKKPAMREIIXDVELAARIIPRGFIWPXPAYRELIN 167 G+LFLYI GWIGWV R YL+ V+ KP +EII DV LA + + GF WP A++E + Sbjct: 111 GLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAVKFMSSGFAWPLAAWQEFSS 170 Query: 166 GDLVVDDADI 137 G L+ + DI Sbjct: 171 GQLIAPNDDI 180
>PSAF_SYNY3 (P29256) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 76.3 bits (186), Expect = 2e-14 Identities = 34/69 (49%), Positives = 47/69 (68%) Frame = -1 Query: 343 VLFLYIXGWIGWVXRSYLIXVSGEKKPAMREIIXDVELAARIIPRGFIWPXPAYRELING 164 +LFLYI GWIGWV RSYLI + K P M+E++ +V LA + + GF+WP A E +G Sbjct: 92 ILFLYIAGWIGWVGRSYLIEIRESKNPEMQEVVINVPLAIKKMLGGFLWPLAAVGEYTSG 151 Query: 163 DLVVDDADI 137 LV+ D++I Sbjct: 152 KLVMKDSEI 160
>PSAF_ODOSI (P49483) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 74.7 bits (182), Expect = 5e-14 Identities = 35/70 (50%), Positives = 45/70 (64%) Frame = -1 Query: 346 GVLFLYIXGWIGWVXRSYLIXVSGEKKPAMREIIXDVELAARIIPRGFIWPXPAYRELIN 167 G F+YI GWIGWV R YL VS K P EII +V LA +I+ G+IWP A++E I+ Sbjct: 111 GFGFIYISGWIGWVGRKYLRAVSTTKNPTESEIIINVPLALKIMTTGYIWPISAWQEFIS 170 Query: 166 GDLVVDDADI 137 DLV D ++ Sbjct: 171 NDLVALDEEV 180
>PSAF_GUITH (O78457) Photosystem I reaction center subunit III (PSI-F)| Length = 183 Score = 73.6 bits (179), Expect = 1e-13 Identities = 32/70 (45%), Positives = 45/70 (64%) Frame = -1 Query: 346 GVLFLYIXGWIGWVXRSYLIXVSGEKKPAMREIIXDVELAARIIPRGFIWPXPAYRELIN 167 G+ FLYI GWIGWV R+Y+ S KP +EII DV +A I G+IWP A++E + Sbjct: 109 GLFFLYIAGWIGWVGRNYVQFASQTDKPTEKEIIIDVPVALSFISTGYIWPFAAFKEFTS 168 Query: 166 GDLVVDDADI 137 G+L+ + +I Sbjct: 169 GNLIAKEDEI 178
>PSAF_SYNEN (P0A402) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 73.2 bits (178), Expect = 2e-13 Identities = 35/69 (50%), Positives = 44/69 (63%) Frame = -1 Query: 343 VLFLYIXGWIGWVXRSYLIXVSGEKKPAMREIIXDVELAARIIPRGFIWPXPAYRELING 164 VLFLYI GWIGWV R+YLI V + +EII DV LA + + GF WP A +EL +G Sbjct: 91 VLFLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASG 150 Query: 163 DLVVDDADI 137 +L D +I Sbjct: 151 ELTAKDNEI 159
>PSAF_SYNEL (P0A401) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 73.2 bits (178), Expect = 2e-13 Identities = 35/69 (50%), Positives = 44/69 (63%) Frame = -1 Query: 343 VLFLYIXGWIGWVXRSYLIXVSGEKKPAMREIIXDVELAARIIPRGFIWPXPAYRELING 164 VLFLYI GWIGWV R+YLI V + +EII DV LA + + GF WP A +EL +G Sbjct: 91 VLFLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASG 150 Query: 163 DLVVDDADI 137 +L D +I Sbjct: 151 ELTAKDNEI 159
>PSAF_ANAVT (P31091) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 72.0 bits (175), Expect = 3e-13 Identities = 32/69 (46%), Positives = 44/69 (63%) Frame = -1 Query: 343 VLFLYIXGWIGWVXRSYLIXVSGEKKPAMREIIXDVELAARIIPRGFIWPXPAYRELING 164 +LFLYI GWIGWV R+YL + + +EI D+ LA II GF WP A +EL++G Sbjct: 91 ILFLYIAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGLALPIIATGFAWPAAAVKELLSG 150 Query: 163 DLVVDDADI 137 +L D++I Sbjct: 151 ELTAKDSEI 159
>PSAF_ANASP (P58564) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 71.2 bits (173), Expect = 6e-13 Identities = 31/69 (44%), Positives = 44/69 (63%) Frame = -1 Query: 343 VLFLYIXGWIGWVXRSYLIXVSGEKKPAMREIIXDVELAARIIPRGFIWPXPAYRELING 164 +LFLYI GWIGWV R+YL + + +EI D+ +A II GF WP A +EL++G Sbjct: 91 ILFLYIAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGIALPIIATGFAWPAAAVKELLSG 150 Query: 163 DLVVDDADI 137 +L D++I Sbjct: 151 ELTAKDSEI 159
>PSAF_SYNP6 (P31083) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 159 Score = 69.7 bits (169), Expect = 2e-12 Identities = 32/69 (46%), Positives = 43/69 (62%) Frame = -1 Query: 343 VLFLYIXGWIGWVXRSYLIXVSGEKKPAMREIIXDVELAARIIPRGFIWPXPAYRELING 164 +LFLYI GWIGWV RSYL + +K A +EI+ DV LA + GF WP A++E +G Sbjct: 86 LLFLYIAGWIGWVGRSYLQAIKSDKDAAGKEIVIDVPLAVKFSLTGFAWPLAAFQEFSSG 145 Query: 163 DLVVDDADI 137 L+ +I Sbjct: 146 KLLAKADEI 154
>PSAF_CYAPA (P48115) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 186 Score = 66.6 bits (161), Expect = 1e-11 Identities = 30/70 (42%), Positives = 43/70 (61%) Frame = -1 Query: 346 GVLFLYIXGWIGWVXRSYLIXVSGEKKPAMREIIXDVELAARIIPRGFIWPXPAYRELIN 167 G+LFLYI G+IGW RSYL V+ +EII D+ +A + + +GF+WP A +E + Sbjct: 112 GLLFLYIAGFIGWSGRSYLQAVAASDNSTEKEIIIDIPVALQSVSKGFVWPLAALQEFSS 171 Query: 166 GDLVVDDADI 137 G L D +I Sbjct: 172 GKLTARDEEI 181
>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 protein) Length = 227 Score = 64.7 bits (156), Expect = 5e-11 Identities = 32/67 (47%), Positives = 43/67 (64%) Frame = -1 Query: 337 FLYIXGWIGWVXRSYLIXVSGEKKPAMREIIXDVELAARIIPRGFIWPXPAYRELINGDL 158 FLY+ G+IG+V R YLI V GE KP +EII DV LA ++ +G WP A +EL G L Sbjct: 156 FLYVAGYIGYVGRQYLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRGTL 215 Query: 157 VVDDADI 137 + + +I Sbjct: 216 LEKEENI 222
>PSAF_MASLA (O31127) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 61.2 bits (147), Expect = 6e-10 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Frame = -1 Query: 343 VLFLYIXGWIGWVXRSYLIXVSGE-KKPAMREIIXDVELAARIIPRGFIWPXPAYRELIN 167 +LFLYI GWIGWV R+YL + + +EI ++ +A I+ GF WP A +E ++ Sbjct: 91 ILFLYIAGWIGWVGRAYLQTIKKQGSNVEQKEIQIELPIALPIMLSGFAWPAAAIKEFLS 150 Query: 166 GDLVVDDADI 137 G+L D +I Sbjct: 151 GELTAKDEEI 160
>PSAF_CYACA (Q9TLW6) Photosystem I reaction center subunit III (PSI-F)| Length = 187 Score = 59.7 bits (143), Expect = 2e-09 Identities = 29/69 (42%), Positives = 38/69 (55%) Frame = -1 Query: 343 VLFLYIXGWIGWVXRSYLIXVSGEKKPAMREIIXDVELAARIIPRGFIWPXPAYRELING 164 VLF+YI GWIGW + YL KP EII D+ A + + GF WP A +E NG Sbjct: 114 VLFIYIAGWIGWAGKGYLQYSKTLTKPNENEIIIDLPRALKYMFSGFAWPILALKEFKNG 173 Query: 163 DLVVDDADI 137 L+ + +I Sbjct: 174 SLLASNDEI 182
>PSAF_PROMA (Q9X7I4) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 183 Score = 54.3 bits (129), Expect = 7e-08 Identities = 28/70 (40%), Positives = 38/70 (54%) Frame = -1 Query: 346 GVLFLYIXGWIGWVXRSYLIXVSGEKKPAMREIIXDVELAARIIPRGFIWPXPAYRELIN 167 G +F+Y+ G IGW R YL K PA EII D LA + + +G WP A ++ + Sbjct: 108 GHIFIYVAGIIGWSGREYLRASKKTKNPAENEIIIDFALARQCLIKGAAWPVEANKQGRS 167 Query: 166 GDLVVDDADI 137 GDL D +I Sbjct: 168 GDLREKDENI 177
>PSAF_GLOVI (Q7NH05) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 181 Score = 48.5 bits (114), Expect = 4e-06 Identities = 28/66 (42%), Positives = 36/66 (54%) Frame = -1 Query: 343 VLFLYIXGWIGWVXRSYLIXVSGEKKPAMREIIXDVELAARIIPRGFIWPXPAYRELING 164 VLFL+I G +GW R YL E K EII D+ A + + G IWP A ELI+G Sbjct: 112 VLFLWIAGALGWAGRLYL----AESKGPEDEIIIDLPKAIKCLLLGLIWPVQAIPELISG 167 Query: 163 DLVVDD 146 + V + Sbjct: 168 KIRVPE 173
>YHBP_ECO57 (Q8XA94) UPF0306 protein yhbP| Length = 147 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -1 Query: 127 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 41 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOL6 (Q8FD95) UPF0306 protein yhbP| Length = 140 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -1 Query: 127 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 41 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_SHIFL (P67763) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -1 Query: 127 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 41 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOLI (P67762) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -1 Query: 127 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 41 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>PPZ1_YEAST (P26570) Serine/threonine-protein phosphatase PP-Z1 (EC 3.1.3.16)| Length = 691 Score = 28.1 bits (61), Expect = 5.6 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +3 Query: 33 HQAHTDRHHKPSSSAAH 83 H +HT+R+H PSSS +H Sbjct: 79 HSSHTNRYHFPSSSHSH 95
>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor| (MAdCAM-1) (hMAdCAM-1) Length = 406 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +1 Query: 1 VPFLHDPISSYTKPTQIDTTSPHPP 75 +P LH P T P DTTSP PP Sbjct: 221 IPVLHSP----TSPEPPDTTSPEPP 241
>YHBP_SALTY (P60822) UPF0306 protein yhbP| Length = 147 Score = 27.7 bits (60), Expect = 7.3 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = -1 Query: 127 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 41 L A+ WLA + V W EG LWC + + Sbjct: 4 LTAIGRWLAKQHVVTWCVHHEGELWCANAF 33
>YHBP_SALTI (P60821) UPF0306 protein yhbP| Length = 147 Score = 27.7 bits (60), Expect = 7.3 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = -1 Query: 127 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 41 L A+ WLA + V W EG LWC + + Sbjct: 4 LTAIGRWLAKQHVVTWCVHHEGELWCANAF 33
>DNMBP_HUMAN (Q6XZF7) Dynamin-binding protein (Scaffold protein Tuba)| Length = 1577 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = +2 Query: 35 PSPHRSTPQALILRCPSDLGPTSQPRTHGS 124 PS S+P RCPSD TSQPR+ S Sbjct: 1424 PSNSESSPS----RCPSDPDSTSQPRSGDS 1449
>AGI_URTDI (P11218) Lectin/endochitinase precursor (EC 3.2.1.14)| (Agglutinin) (UDA) Length = 372 Score = 27.3 bits (59), Expect = 9.6 Identities = 7/10 (70%), Positives = 8/10 (80%) Frame = -1 Query: 61 LWCRSVWAWC 32 LWC S+W WC Sbjct: 38 LWCCSIWGWC 47
>RDRP_MRNV (Q6XNL5) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) Length = 1045 Score = 27.3 bits (59), Expect = 9.6 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = -1 Query: 100 SRSQVRWAAEDEGLWCRSVWAWCRS**DHGE 8 S +QV + + G W VW WC D+GE Sbjct: 217 SDNQVDYRVDGGGRWQHKVWNWC----DYGE 243 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,881,256 Number of Sequences: 219361 Number of extensions: 579653 Number of successful extensions: 1905 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 1740 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1902 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
