ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal31n04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit... 624 e-176
2ref|NM_184976.1| Oryza sativa (japonica cultivar-group), mRNA 242 6e-61
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 242 6e-61
4gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 geno... 242 6e-61
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 242 6e-61
6dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 6e-61
7dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 6e-61
8dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 6e-61
9gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit prec... 242 6e-61
10gb|AY103687.1| Zea mays PCO106710 mRNA sequence 230 2e-57
11emb|X63765.1|SSPPSAFJ9 Synechococcus sp. genes psaF, psaJ and rp... 46 0.074
12dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete... 46 0.074
13ref|NM_197599.1| Oryza sativa (japonica cultivar-group) mucin-li... 44 0.29
14emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; s... 44 0.29
15emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; s... 44 0.29
16dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.29
17dbj|AK106264.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.29
18gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 42 1.2
19emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.2
20emb|BX640425.1| Bordetella parapertussis strain 12822, complete ... 42 1.2
21emb|BX640411.1| Bordetella pertussis strain Tohama I, complete g... 42 1.2
22gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 geno... 42 1.2
23dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
24dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
25gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 42 1.2
26gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
27emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4,... 42 1.2
28ref|XM_471550.1| Oryza sativa (japonica cultivar-group), predic... 40 4.6
29ref|NM_197655.1| Oryza sativa (japonica cultivar-group) hypothet... 40 4.6
30gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 4.6
31gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 4.6
32emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chr... 40 4.6
33emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete ... 40 4.6
34emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4,... 40 4.6
35gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.6
36gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 geno... 40 4.6
37gb|CP000249.1| Frankia sp. CcI3, complete genome 40 4.6
38gb|DQ377967.1| Populus x canadensis putative chloroplast photosy... 40 4.6
39dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
40emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 4.6
41gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.6 
>gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit precursor mRNA,
           complete cds
          Length = 990

 Score =  624 bits (315), Expect = e-176
 Identities = 337/346 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttccatttctccatgatcctatcagctcctacaccaagcccacacagatcgacaccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 gttccatttctccatgatcctatcagctcctacaccaagcccacacagatcgacaccaca 825

                                                                       
Query: 61  agccctcatcctccgctgcccatctgacttgggaccgactagccaaccacgcacgcatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 agccctcatcctccgctgcccatctgacttgggaccgactagccaaccacgcacgcatgg 765

                                                                       
Query: 121 cagctagttagtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgc 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 cagctacttagtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgc 705

                                                                       
Query: 181 ggtatgcggggnggggccagatgaagcccctggggatgatcctggcggcgagctcgacgt 240
           ||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ggtatgcggcgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgt 645

                                                                       
Query: 241 cnatgatgatctccctcatggcgggcttcttctcgccgctgacggngatgaggtagctgc 300
           | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 644 cgatgatgatctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgc 585

                                                         
Query: 301 gtncgacccagccgatccagccgncgatgtataggaagagcacgcc 346
           || |||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 584 gtccgacccagccgatccagccggcgatgtagaggaagagcacgcc 539
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>ref|NM_184976.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1038

 Score =  242 bits (122), Expect = 6e-61
 Identities = 189/213 (88%)
 Strand = Plus / Minus

                                                                       
Query: 130 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 189
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 778 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 719

                                                                       
Query: 190 ggnggggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcnatgatga 249
            |  |||||||||||| ||||| |||| || | || |||||||||||||||| |||||||
Sbjct: 718 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 659

                                                                       
Query: 250 tctccctcatggcgggcttcttctcgccgctgacggngatgaggtagctgcgtncgaccc 309
           ||||||||||||| ||||||||||||||||||| || |||||||||||| |   ||||||
Sbjct: 658 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 599

                                            
Query: 310 agccgatccagccgncgatgtataggaagagca 342
           |||||||||||||| ||||||| ||||||||||
Sbjct: 598 agccgatccagccggcgatgtagaggaagagca 566



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 2   ttccatttctccatgatcctatcagctcctacacc 36
           ||||||| ||||||||||||||||||| |||||||
Sbjct: 901 ttccattcctccatgatcctatcagcttctacacc 867
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  242 bits (122), Expect = 6e-61
 Identities = 189/213 (88%)
 Strand = Plus / Plus

                                                                            
Query: 130      agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 189
                ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 31969474 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 31969533

                                                                            
Query: 190      ggnggggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcnatgatga 249
                 |  |||||||||||| ||||| |||| || | || |||||||||||||||| |||||||
Sbjct: 31969534 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 31969593

                                                                            
Query: 250      tctccctcatggcgggcttcttctcgccgctgacggngatgaggtagctgcgtncgaccc 309
                ||||||||||||| ||||||||||||||||||| || |||||||||||| |   ||||||
Sbjct: 31969594 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 31969653

                                                 
Query: 310      agccgatccagccgncgatgtataggaagagca 342
                |||||||||||||| ||||||| ||||||||||
Sbjct: 31969654 agccgatccagccggcgatgtagaggaagagca 31969686



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 2        ttccatttctccatgatcctatcagctcctacacc 36
                ||||||| ||||||||||||||||||| |||||||
Sbjct: 31969239 ttccattcctccatgatcctatcagcttctacacc 31969273
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>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete
             sequence
          Length = 144306

 Score =  242 bits (122), Expect = 6e-61
 Identities = 189/213 (88%)
 Strand = Plus / Plus

                                                                         
Query: 130   agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 189
             ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 61426 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 61485

                                                                         
Query: 190   ggnggggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcnatgatga 249
              |  |||||||||||| ||||| |||| || | || |||||||||||||||| |||||||
Sbjct: 61486 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 61545

                                                                         
Query: 250   tctccctcatggcgggcttcttctcgccgctgacggngatgaggtagctgcgtncgaccc 309
             ||||||||||||| ||||||||||||||||||| || |||||||||||| |   ||||||
Sbjct: 61546 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 61605

                                              
Query: 310   agccgatccagccgncgatgtataggaagagca 342
             |||||||||||||| ||||||| ||||||||||
Sbjct: 61606 agccgatccagccggcgatgtagaggaagagca 61638



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 2     ttccatttctccatgatcctatcagctcctacacc 36
             ||||||| ||||||||||||||||||| |||||||
Sbjct: 61191 ttccattcctccatgatcctatcagcttctacacc 61225
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  242 bits (122), Expect = 6e-61
 Identities = 189/213 (88%)
 Strand = Plus / Plus

                                                                            
Query: 130      agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 189
                ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 32059986 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 32060045

                                                                            
Query: 190      ggnggggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcnatgatga 249
                 |  |||||||||||| ||||| |||| || | || |||||||||||||||| |||||||
Sbjct: 32060046 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 32060105

                                                                            
Query: 250      tctccctcatggcgggcttcttctcgccgctgacggngatgaggtagctgcgtncgaccc 309
                ||||||||||||| ||||||||||||||||||| || |||||||||||| |   ||||||
Sbjct: 32060106 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 32060165

                                                 
Query: 310      agccgatccagccgncgatgtataggaagagca 342
                |||||||||||||| ||||||| ||||||||||
Sbjct: 32060166 agccgatccagccggcgatgtagaggaagagca 32060198



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 2        ttccatttctccatgatcctatcagctcctacacc 36
                ||||||| ||||||||||||||||||| |||||||
Sbjct: 32059751 ttccattcctccatgatcctatcagcttctacacc 32059785
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>dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031N02, full
           insert sequence
          Length = 967

 Score =  242 bits (122), Expect = 6e-61
 Identities = 189/213 (88%)
 Strand = Plus / Minus

                                                                       
Query: 130 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 189
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 742 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 683

                                                                       
Query: 190 ggnggggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcnatgatga 249
            |  |||||||||||| ||||| |||| || | || |||||||||||||||| |||||||
Sbjct: 682 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 623

                                                                       
Query: 250 tctccctcatggcgggcttcttctcgccgctgacggngatgaggtagctgcgtncgaccc 309
           ||||||||||||| ||||||||||||||||||| || |||||||||||| |   ||||||
Sbjct: 622 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 563

                                            
Query: 310 agccgatccagccgncgatgtataggaagagca 342
           |||||||||||||| ||||||| ||||||||||
Sbjct: 562 agccgatccagccggcgatgtagaggaagagca 530



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 2   ttccatttctccatgatcctatcagctcctacacc 36
           ||||||| ||||||||||||||||||| |||||||
Sbjct: 870 ttccattcctccatgatcctatcagcttctacacc 836
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>dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D02, full
           insert sequence
          Length = 997

 Score =  242 bits (122), Expect = 6e-61
 Identities = 189/213 (88%)
 Strand = Plus / Minus

                                                                       
Query: 130 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 189
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 777 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 718

                                                                       
Query: 190 ggnggggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcnatgatga 249
            |  |||||||||||| ||||| |||| || | || |||||||||||||||| |||||||
Sbjct: 717 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 658

                                                                       
Query: 250 tctccctcatggcgggcttcttctcgccgctgacggngatgaggtagctgcgtncgaccc 309
           ||||||||||||| ||||||||||||||||||| || |||||||||||| |   ||||||
Sbjct: 657 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 598

                                            
Query: 310 agccgatccagccgncgatgtataggaagagca 342
           |||||||||||||| ||||||| ||||||||||
Sbjct: 597 agccgatccagccggcgatgtagaggaagagca 565



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 2   ttccatttctccatgatcctatcagctcctacacc 36
           ||||||| ||||||||||||||||||| |||||||
Sbjct: 900 ttccattcctccatgatcctatcagcttctacacc 866
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>dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-C12, full
           insert sequence
          Length = 990

 Score =  242 bits (122), Expect = 6e-61
 Identities = 189/213 (88%)
 Strand = Plus / Minus

                                                                       
Query: 130 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 189
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 765 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 706

                                                                       
Query: 190 ggnggggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcnatgatga 249
            |  |||||||||||| ||||| |||| || | || |||||||||||||||| |||||||
Sbjct: 705 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 646

                                                                       
Query: 250 tctccctcatggcgggcttcttctcgccgctgacggngatgaggtagctgcgtncgaccc 309
           ||||||||||||| ||||||||||||||||||| || |||||||||||| |   ||||||
Sbjct: 645 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 586

                                            
Query: 310 agccgatccagccgncgatgtataggaagagca 342
           |||||||||||||| ||||||| ||||||||||
Sbjct: 585 agccgatccagccggcgatgtagaggaagagca 553



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 2   ttccatttctccatgatcctatcagctcctacacc 36
           ||||||| ||||||||||||||||||| |||||||
Sbjct: 893 ttccattcctccatgatcctatcagcttctacacc 859
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>gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit precursor (PSI-F) mRNA,
           complete cds
          Length = 996

 Score =  242 bits (122), Expect = 6e-61
 Identities = 189/213 (88%)
 Strand = Plus / Minus

                                                                       
Query: 130 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 189
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 758 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 699

                                                                       
Query: 190 ggnggggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcnatgatga 249
            |  |||||||||||| ||||| |||| || | || |||||||||||||||| |||||||
Sbjct: 698 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 639

                                                                       
Query: 250 tctccctcatggcgggcttcttctcgccgctgacggngatgaggtagctgcgtncgaccc 309
           ||||||||||||| ||||||||||||||||||| || |||||||||||| |   ||||||
Sbjct: 638 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 579

                                            
Query: 310 agccgatccagccgncgatgtataggaagagca 342
           |||||||||||||| ||||||| ||||||||||
Sbjct: 578 agccgatccagccggcgatgtagaggaagagca 546



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 2   ttccatttctccatgatcctatcagctcctacacc 36
           ||||||| ||||||||||||||||||| |||||||
Sbjct: 881 ttccattcctccatgatcctatcagcttctacacc 847
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>gb|AY103687.1| Zea mays PCO106710 mRNA sequence
          Length = 1242

 Score =  230 bits (116), Expect = 2e-57
 Identities = 196/223 (87%), Gaps = 1/223 (0%)
 Strand = Plus / Minus

                                                                       
Query: 120 gcagctagttagtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcg 179
           ||||||||| |||||||||||||   |||||||||||||||||| |||||||||||||||
Sbjct: 802 gcagctagt-agtagccgatgtccttgtcgtcgacgacgaggtctccgttgatgagctcg 744

                                                                       
Query: 180 cggtatgcggggnggggccagatgaagcccctggggatgatcctggcggcgagctcgacg 239
           ||||| || | |  |||||||||||| |||||||||| ||  | || |||||||||||||
Sbjct: 743 cggtaggccgcgacgggccagatgaaccccctggggaggaggcgggtggcgagctcgacg 684

                                                                       
Query: 240 tcnatgatgatctccctcatggcgggcttcttctcgccgctgacggngatgaggtagctg 299
           || |||||||||||||||||||||||||||||||||||||||| || |||||||||||| 
Sbjct: 683 tcgatgatgatctccctcatggcgggcttcttctcgccgctgatggcgatgaggtagctc 624

                                                      
Query: 300 cgtncgacccagccgatccagccgncgatgtataggaagagca 342
           |   ||||||| |||||||| ||| ||||||| ||||||||||
Sbjct: 623 ctgccgacccacccgatccacccggcgatgtagaggaagagca 581
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>emb|X63765.1|SSPPSAFJ9 Synechococcus sp. genes psaF, psaJ and rp19 for photosystem I
           subunit III, subunit X and ribosomal protein RL9
          Length = 1592

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 306 acccagccgatccagccgncgatgtataggaagagcac 343
           |||||||| ||||||||  ||||||| |||||||||||
Sbjct: 512 acccagccaatccagccagcgatgtacaggaagagcac 475
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>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 306     acccagccgatccagccgncgatgtataggaagagcac 343
               |||||||| ||||||||  ||||||| |||||||||||
Sbjct: 2524284 acccagccaatccagccagcgatgtacaggaagagcac 2524247
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>ref|NM_197599.1| Oryza sativa (japonica cultivar-group) mucin-like protein
           (OSJNBb0015I11.17), mRNA
          Length = 1110

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 135 ccgatgtcggcgtcgtcgacgacgaggtcgccgt 168
           ||||||||||||||| ||||||| ||| ||||||
Sbjct: 386 ccgatgtcggcgtcggcgacgacaaggccgccgt 353
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>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2
          Length = 178073

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 134   gccgatgtcggcgtcgtcgacgacgaggtcgccg 167
             ||||||||| ||| ||||||||||||| ||||||
Sbjct: 38032 gccgatgtccgcgccgtcgacgacgagctcgccg 38065
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>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2
          Length = 178000

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 134    gccgatgtcggcgtcgtcgacgacgaggtcgccg 167
              ||||||||| ||| ||||||||||||| ||||||
Sbjct: 127590 gccgatgtccgcgccgtcgacgacgagctcgccg 127557
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 140     gtcggcgtcgtcgacgacgagg 161
               ||||||||||||||||||||||
Sbjct: 1139192 gtcggcgtcgtcgacgacgagg 1139213
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>dbj|AK106264.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F10, full
           insert sequence
          Length = 1488

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 135 ccgatgtcggcgtcgtcgacgacgaggtcgccgt 168
           ||||||||||||||| ||||||| ||| ||||||
Sbjct: 62  ccgatgtcggcgtcggcgacgacaaggccgccgt 29
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 142     cggcgtcgtcgacgacgaggt 162
               |||||||||||||||||||||
Sbjct: 1949449 cggcgtcgtcgacgacgaggt 1949429
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>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16
          Length = 346362

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 268    tcttctcgccgctgacggngatga 291
              |||||||||||||||||| |||||
Sbjct: 190124 tcttctcgccgctgacggtgatga 190147
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>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14
          Length = 348257

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 268    tcttctcgccgctgacggngatga 291
              |||||||||||||||||| |||||
Sbjct: 103960 tcttctcgccgctgacggtgatga 103983
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>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12
          Length = 346359

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 268    tcttctcgccgctgacggngatga 291
              |||||||||||||||||| |||||
Sbjct: 179689 tcttctcgccgctgacggtgatga 179712
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>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete
              sequence
          Length = 138824

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 136    cgatgtcggcgtcgtcgacgacgaggtcgccgt 168
              |||||||||||||| ||||||| ||| ||||||
Sbjct: 107077 cgatgtcggcgtcggcgacgacaaggccgccgt 107045
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 134      gccgatgtcggcgtcgtcgacgacg 158
                |||||||||| ||||||||||||||
Sbjct: 18403096 gccgatgtcgtcgtcgtcgacgacg 18403072



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 142      cggcgtcgtcgacgacgagg 161
                ||||||||||||||||||||
Sbjct: 12249186 cggcgtcgtcgacgacgagg 12249167
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 136      cgatgtcggcgtcgtcgacgacgaggtcgccgt 168
                |||||||||||||| ||||||| ||| ||||||
Sbjct: 20705625 cgatgtcggcgtcggcgacgacaaggccgccgt 20705593



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 141      tcggcgtcgtcgacgacgag 160
                ||||||||||||||||||||
Sbjct: 21068348 tcggcgtcgtcgacgacgag 21068367
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 149     gtcgacgacgaggtcgccgttgatg 173
               |||||||||||||||||||| ||||
Sbjct: 1766710 gtcgacgacgaggtcgccgtcgatg 1766734
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 136      cgatgtcggcgtcgtcgacgacgaggtcgccgt 168
                |||||||||||||| ||||||| ||| ||||||
Sbjct: 20716897 cgatgtcggcgtcggcgacgacaaggccgccgt 20716865



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 141      tcggcgtcgtcgacgacgag 160
                ||||||||||||||||||||
Sbjct: 21079612 tcggcgtcgtcgacgacgag 21079631
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>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15,
              complete sequence
          Length = 133413

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 134    gccgatgtcggcgtcgtcgacgacg 158
              |||||||||| ||||||||||||||
Sbjct: 105019 gccgatgtcgtcgtcgtcgacgacg 104995
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>ref|XM_471550.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 837

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 142 cggcgtcgtcgacgacgagg 161
           ||||||||||||||||||||
Sbjct: 214 cggcgtcgtcgacgacgagg 195
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>ref|NM_197655.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0015J15.29), mRNA
          Length = 1440

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 141 tcggcgtcgtcgacgacgag 160
           ||||||||||||||||||||
Sbjct: 85  tcggcgtcgtcgacgacgag 66
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 266     cttcttctcgccgctgacgg 285
               ||||||||||||||||||||
Sbjct: 3593435 cttcttctcgccgctgacgg 3593454
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 139     tgtcggcgtcgtcgacgacg 158
               ||||||||||||||||||||
Sbjct: 1625246 tgtcggcgtcgtcgacgacg 1625227
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>emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chromosome 1, complete
              sequence
          Length = 173580

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 6      atttctccatgatcctatcagctcctac 33
              ||||||||||||||| |||| |||||||
Sbjct: 156375 atttctccatgatccaatcacctcctac 156348
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>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    cggcgtcgtcgacgacgagg 161
              ||||||||||||||||||||
Sbjct: 228093 cggcgtcgtcgacgacgagg 228112
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>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05,
             complete sequence
          Length = 185211

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   cggcgtcgtcgacgacgagg 161
             ||||||||||||||||||||
Sbjct: 74067 cggcgtcgtcgacgacgagg 74048
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>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09,
              complete sequence
          Length = 145070

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 140    gtcggcgtcgtcgacgacgaggtcgccg 167
              |||| ||||||||||||||| |||||||
Sbjct: 102007 gtcgtcgtcgtcgacgacgacgtcgccg 102034
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>gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 genomic sequence, complete
              sequence
          Length = 144798

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    tcggcgtcgtcgacgacgag 160
              ||||||||||||||||||||
Sbjct: 137358 tcggcgtcgtcgacgacgag 137339
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 140     gtcggcgtcgtcgacgacga 159
               ||||||||||||||||||||
Sbjct: 3776403 gtcggcgtcgtcgacgacga 3776422
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>gb|DQ377967.1| Populus x canadensis putative chloroplast photosystem I subunit III
           precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 324

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 34/39 (87%)
 Strand = Plus / Minus

                                                  
Query: 237 acgtcnatgatgatctccctcatggcgggcttcttctcg 275
           ||||| || ||||||||| |||| || ||||||||||||
Sbjct: 94  acgtcaataatgatctccttcattgctggcttcttctcg 56
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 140     gtcggcgtcgtcgacgacgaggtcgccg 167
               |||| ||||||||||||||| |||||||
Sbjct: 4734002 gtcgtcgtcgtcgacgacgacgtcgccg 4734029
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 154     cgacgaggtcgccgttgatgagct 177
               ||||||||||| ||||||||||||
Sbjct: 1147951 cgacgaggtcgtcgttgatgagct 1147974
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>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
            complete sequence
          Length = 187956

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 140  gtcggcgtcgtcgacgacgaggtcgccg 167
            |||| ||||||||||||||| |||||||
Sbjct: 6410 gtcgtcgtcgtcgacgacgacgtcgccg 6437


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,811,922
Number of Sequences: 3902068
Number of extensions: 1811922
Number of successful extensions: 39872
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38857
Number of HSP's gapped (non-prelim): 1015
length of query: 346
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 324
effective length of database: 17,147,199,772
effective search space: 5555692726128
effective search space used: 5555692726128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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