ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal32b18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AGRN_HUMAN (O00468) Agrin precursor 32 2.6
2NED1_SCHPO (Q9UUJ6) Nuclear elongation and deformation protein 1 30 7.5
3PLCF_HUMAN (Q86UL3) 1-acyl-sn-glycerol-3-phosphate acyltransfera... 30 7.5
4AGRN_RAT (P25304) Agrin precursor 30 7.5
5FBLN2_HUMAN (P98095) Fibulin-2 precursor 30 9.7

>AGRN_HUMAN (O00468) Agrin precursor|
          Length = 2045

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -2

Query: 422 QDDGTCHGEESQSLLEVSQQPEL--KCRGSDWRSPAIILGLECLESTPCHVK*GKTVCFC 249
           QD  T   +  +   E  QQ  +  K +G   ++P+  LG++C     C VK G+  C C
Sbjct: 431 QDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCAVKNGQAACEC 490

Query: 248 TQVVMMIY 225
            Q    +Y
Sbjct: 491 LQACSSLY 498



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>NED1_SCHPO (Q9UUJ6) Nuclear elongation and deformation protein 1|
          Length = 656

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 349 VEVLTGDHLQSFLDLNAWRAHHATLSEEK 263
           +EV T D + SF D+N WR+    LS+E+
Sbjct: 562 IEVSTRDEVSSFTDVNFWRSPLLELSDEE 590



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>PLCF_HUMAN (Q86UL3) 1-acyl-sn-glycerol-3-phosphate acyltransferase zeta|
           precursor (EC 2.3.1.51) (1-AGP acyltransferase 6)
           (1-AGPAT 6) (Lysophosphatidic acid acyltransferase-zeta)
           (LPAAT-zeta)
          Length = 456

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 466 LLLKSNAYVETWPSIRMMEHAMVKNHSLYWKYLN 365
           L +KS   +  W ++RM   A  KNH LY  Y N
Sbjct: 45  LYMKSLLKIFAWATLRMERGAKEKNHQLYKPYTN 78



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>AGRN_RAT (P25304) Agrin precursor|
          Length = 1959

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -2

Query: 422 QDDGTCHGEESQSLLEVSQQPEL--KCRGSDWRSPAIILGLECLESTPCHVK*GKTVCFC 249
           QD  T + +  +   E  QQ  +  K +G   ++P+   G++C     C VK GK  C C
Sbjct: 326 QDGHTYNNDCWRQQAECRQQRAIPPKHQGPCDQTPSPCHGVQCAFGAVCTVKNGKAECEC 385

Query: 248 TQVVMMIY 225
            +V   IY
Sbjct: 386 QRVCSGIY 393



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>FBLN2_HUMAN (P98095) Fibulin-2 precursor|
          Length = 1184

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 9/85 (10%)
 Frame = -2

Query: 476 CL*FTPQKQCLC*DMAFYQDDG-TCHGEESQSLLEVSQQPELKCRGSDWRSPAIILGL-- 306
           C+       C C      QDDG TC  E      E  Q+P LK   S   S  I L L  
Sbjct: 620 CINTVGSYHCACFPGFSLQDDGRTCRPEGHPPQPEAPQEPALKSEFSQVASNTIPLPLPQ 679

Query: 305 --ECLESTP----CHVK*GKTVCFC 249
              C ++ P    C    G  +C C
Sbjct: 680 PNTCKDNGPCKQVCSTVGGSAICSC 704


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,024,281
Number of Sequences: 219361
Number of extensions: 1483095
Number of successful extensions: 3006
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3006
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7366267610
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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