>VP19_HHV6U (P52348) Capsid assembly and DNA maturation protein (Minor capsid|
           protein)
          Length = 299

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 65  VKPPWFSACHLQMYSYMLKIYRDVISKSFYAAYASL 172
           ++P W    H   Y Y++ +Y++V++K  Y  Y  L
Sbjct: 181 LEPDWEPRQHSTQYVYVVHVYKEVLAKLQYGIYVVL 216


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,631,895
Number of Sequences: 219361
Number of extensions: 320440
Number of successful extensions: 559
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 80,573,946
effective HSP length: 36
effective length of database: 72,676,950
effective search space used: 1744246800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)