ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal31l05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_474305.1| Oryza sativa (japonica cultivar-group), predic... 222 1e-54
2dbj|AK100753.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 1e-54
3gb|BT016784.1| Zea mays clone Contig617 mRNA sequence 192 1e-45
4gb|AY104354.1| Zea mays PCO108571 mRNA sequence 192 1e-45
5emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 161 3e-36
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
7emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 161 3e-36
8gb|DQ351282.1| Oryza rufipogon unknown gene 153 8e-34
9emb|BX640415.1| Bordetella pertussis strain Tohama I, complete g... 52 0.002
10ref|XM_368328.1| Magnaporthe grisea 70-15 chromosome VI predicte... 44 0.56
11emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete ... 44 0.56
12emb|BX640426.1| Bordetella parapertussis strain 12822, complete ... 44 0.56
13gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 2.2
14gb|AE009024.1| Agrobacterium tumefaciens str. C58 circular chrom... 42 2.2
15gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 42 2.2
16dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 2.2
17gb|U95165.1|ATU95165 Agrobacterium tumefaciens FlaD (flaD), FlhB... 42 2.2
18gb|U39941.1|ATU39941 Agrobacterium tumefaciens flagellar gene re... 42 2.2
19ref|NM_188637.1| Oryza sativa (japonica cultivar-group), Ozsa824... 40 8.8
20gb|AC162528.5| Mus musculus BAC clone RP23-4P1 from chromosome 5... 40 8.8
21gb|AC151577.2| Mus musculus BAC clone RP23-371D23 from chromosom... 40 8.8
22gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 8.8
23emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 8.8
24gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 8.8
25gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 8.8
26dbj|AB244625.1| Hexagrammos octogrammus genes for 18S rRNA, ITS1... 40 8.8
27gb|AC026443.4| Homo sapiens chromosome 5 clone CTD-2296H22, comp... 40 8.8
28gb|AY129331.1| Mycobacteriophage CJW1, complete genome 40 8.8
29dbj|AK019523.1| Mus musculus 0 day neonate head cDNA, RIKEN full... 40 8.8
30gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 8.8
31gb|AF377927.1|AF377927 Sclerotinia sclerotiorum clone 113-4 micr... 40 8.8
32emb|BX465227.3| Zebrafish DNA sequence from clone RP71-40K24 in ... 40 8.8
33dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
34gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 8.8
35dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
36emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 8.8
37gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 8.8

>ref|XM_474305.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1164

 Score =  222 bits (112), Expect = 1e-54
 Identities = 351/432 (81%)
 Strand = Plus / Minus

                                                                        
Query: 213  gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 272
            |||||||||||||||||| ||||  |||||||||||||  | ||||||||||||  | ||
Sbjct: 1161 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 1102

                                                                        
Query: 273  ccacgccgcgcccgtcaccaggttgccgtcggtgaagcaacggtggatcgggtccggctc 332
            ||| |||||||| ||||| |||||||||||||||||||| ||||  || || |  |||||
Sbjct: 1101 ccatgccgcgccggtcacaaggttgccgtcggtgaagcagcggtcaatgggattgggctc 1042

                                                                        
Query: 333  cagccacgtccccccgcccagcaccacgttcagcttcaccgccgggtacgccgtgcacct 392
            |||||| ||| ||||||| ||||||||||||||||||||||| || |||||||||||  |
Sbjct: 1041 cagccatgtcgccccgccaagcaccacgttcagcttcaccgcaggatacgccgtgcattt 982

                                                                        
Query: 393  ccggccctgaagaaccccagcagcagccaggatctgctgcccgtggcagatcgacgcgac 452
            ||  |||||||| || ||||||||||  |  ||||| || || ||||| || || |||||
Sbjct: 981  ccttccctgaaggactccagcagcagataaaatctgttggccatggcaaattgaggcgac 922

                                                                        
Query: 453  cggctttccgttgtccatgaaccccttggccaggctaaggaccttctcgttcaaggcaag 512
             |||||| | || |||||||| |||||  | ||||||| ||| || |||||||  |||||
Sbjct: 921  tggctttgctttatccatgaagcccttcacaaggctaatgactttatcgttcagtgcaag 862

                                                                        
Query: 513  gtactcgggggcacgcccaccggggatcacaagcgcgtngtagcttgaagcgtccacgcc 572
            |||||| || || || ||||| || || ||||| || |  |||||||| || |||||   
Sbjct: 861  gtactcaggagcccgtccaccaggaattacaagtgcatcatagcttgatgcatccacatt 802

                                                                        
Query: 573  gtcaaacgacgcgttcagagcgaaatcatgaccaggcttntcgctgtatgtctggncncc 632
            |||||| || ||  ||| ||| ||||| ||||||||||| ||||||||||| ||| | ||
Sbjct: 801  gtcaaatgatgctgtcaaagcaaaatcgtgaccaggcttctcgctgtatgtttggtcacc 742

                        
Query: 633  ctcaaagtcatg 644
             |||||||||||
Sbjct: 741  ttcaaagtcatg 730



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>dbj|AK100753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118M23, full
            insert sequence
          Length = 1368

 Score =  222 bits (112), Expect = 1e-54
 Identities = 351/432 (81%)
 Strand = Plus / Minus

                                                                        
Query: 213  gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 272
            |||||||||||||||||| ||||  |||||||||||||  | ||||||||||||  | ||
Sbjct: 1221 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 1162

                                                                        
Query: 273  ccacgccgcgcccgtcaccaggttgccgtcggtgaagcaacggtggatcgggtccggctc 332
            ||| |||||||| ||||| |||||||||||||||||||| ||||  || || |  |||||
Sbjct: 1161 ccatgccgcgccggtcacaaggttgccgtcggtgaagcagcggtcaatgggattgggctc 1102

                                                                        
Query: 333  cagccacgtccccccgcccagcaccacgttcagcttcaccgccgggtacgccgtgcacct 392
            |||||| ||| ||||||| ||||||||||||||||||||||| || |||||||||||  |
Sbjct: 1101 cagccatgtcgccccgccaagcaccacgttcagcttcaccgcaggatacgccgtgcattt 1042

                                                                        
Query: 393  ccggccctgaagaaccccagcagcagccaggatctgctgcccgtggcagatcgacgcgac 452
            ||  |||||||| || ||||||||||  |  ||||| || || ||||| || || |||||
Sbjct: 1041 ccttccctgaaggactccagcagcagataaaatctgttggccatggcaaattgaggcgac 982

                                                                        
Query: 453  cggctttccgttgtccatgaaccccttggccaggctaaggaccttctcgttcaaggcaag 512
             |||||| | || |||||||| |||||  | ||||||| ||| || |||||||  |||||
Sbjct: 981  tggctttgctttatccatgaagcccttcacaaggctaatgactttatcgttcagtgcaag 922

                                                                        
Query: 513  gtactcgggggcacgcccaccggggatcacaagcgcgtngtagcttgaagcgtccacgcc 572
            |||||| || || || ||||| || || ||||| || |  |||||||| || |||||   
Sbjct: 921  gtactcaggagcccgtccaccaggaattacaagtgcatcatagcttgatgcatccacatt 862

                                                                        
Query: 573  gtcaaacgacgcgttcagagcgaaatcatgaccaggcttntcgctgtatgtctggncncc 632
            |||||| || ||  ||| ||| ||||| ||||||||||| ||||||||||| ||| | ||
Sbjct: 861  gtcaaatgatgctgtcaaagcaaaatcgtgaccaggcttctcgctgtatgtttggtcacc 802

                        
Query: 633  ctcaaagtcatg 644
             |||||||||||
Sbjct: 801  ttcaaagtcatg 790



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>gb|BT016784.1| Zea mays clone Contig617 mRNA sequence
          Length = 1616

 Score =  192 bits (97), Expect = 1e-45
 Identities = 335/415 (80%)
 Strand = Plus / Minus

                                                                        
Query: 213  gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 272
            |||||| ||||||| ||||||||  ||||||||||||| ||||||||| |||||  | ||
Sbjct: 1285 gaaggaaaccttgacgccgagcaacgccatgagctgggacacgaactctgggtggcctgg 1226

                                                                        
Query: 273  ccacgccgcgcccgtcaccaggttgccgtcggtgaagcaacggtggatcgggtccggctc 332
            ||| || ||||| ||||| |||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 1225 ccaggctgcgccggtcacaaggttgccatcggtgaagcagcggtggatcgggtcaggctc 1166

                                                                        
Query: 333  cagccacgtccccccgcccagcaccacgttcagcttcaccgccgggtacgccgtgcacct 392
            |||||| ||||| || || |||| ||||||||||||||| || ||||| || |||||| |
Sbjct: 1165 cagccaggtcccgccaccgagcaacacgttcagcttcacggctgggtatgcggtgcactt 1106

                                                                        
Query: 393  ccggccctgaagaaccccagcagcagccaggatctgctgcccgtggcagatcgacgcgac 452
            |   ||||  || || || ||||| |  |  |||||||| ||||||||||||||||||| 
Sbjct: 1105 cttccccttgaggactccggcagcggataatatctgctggccgtggcagatcgacgcgat 1046

                                                                        
Query: 453  cggctttccgttgtccatgaaccccttggccaggctaaggaccttctcgttcaaggcaag 512
             ||||||||| | |||  |||  ||||  ||| ||| | |||||| |||||||  || ||
Sbjct: 1045 tggctttccgctctccgcgaaggccttcaccaagctgatgaccttatcgttcagagccag 986

                                                                        
Query: 513  gtactcgggggcacgcccaccggggatcacaagcgcgtngtagcttgaagcgtccacgcc 572
            |||||| || || || || || || | ||||||||||| |||||| ||||| ||||| | 
Sbjct: 985  gtactctggagcccgtccgccaggaaccacaagcgcgtcgtagctcgaagcatccacact 926

                                                                   
Query: 573  gtcaaacgacgcgttcagagcgaaatcatgaccaggcttntcgctgtatgtctgg 627
              ||||||||||  ||||||  ||||| || |||||||| |||||||| ||||||
Sbjct: 925  tccaaacgacgctgtcagagtaaaatcgtggccaggcttctcgctgtaggtctgg 871



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>gb|AY104354.1| Zea mays PCO108571 mRNA sequence
          Length = 1633

 Score =  192 bits (97), Expect = 1e-45
 Identities = 335/415 (80%)
 Strand = Plus / Minus

                                                                        
Query: 213  gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 272
            |||||| ||||||| ||||||||  ||||||||||||| ||||||||| |||||  | ||
Sbjct: 1259 gaaggaaaccttgacgccgagcaacgccatgagctgggacacgaactctgggtggcctgg 1200

                                                                        
Query: 273  ccacgccgcgcccgtcaccaggttgccgtcggtgaagcaacggtggatcgggtccggctc 332
            ||| || ||||| ||||| |||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 1199 ccaggctgcgccggtcacaaggttgccatcggtgaagcagcggtggatcgggtcaggctc 1140

                                                                        
Query: 333  cagccacgtccccccgcccagcaccacgttcagcttcaccgccgggtacgccgtgcacct 392
            |||||| ||||| || || |||| ||||||||||||||| || ||||| || |||||| |
Sbjct: 1139 cagccaggtcccgccaccgagcaacacgttcagcttcacggctgggtatgcggtgcactt 1080

                                                                        
Query: 393  ccggccctgaagaaccccagcagcagccaggatctgctgcccgtggcagatcgacgcgac 452
            |   ||||  || || || ||||| |  |  |||||||| ||||||||||||||||||| 
Sbjct: 1079 cttccccttgaggactccggcagcggataatatctgctggccgtggcagatcgacgcgat 1020

                                                                        
Query: 453  cggctttccgttgtccatgaaccccttggccaggctaaggaccttctcgttcaaggcaag 512
             ||||||||| | |||  |||  ||||  ||| ||| | |||||| |||||||  || ||
Sbjct: 1019 tggctttccgctctccgcgaaggccttcaccaagctgatgaccttatcgttcagagccag 960

                                                                        
Query: 513  gtactcgggggcacgcccaccggggatcacaagcgcgtngtagcttgaagcgtccacgcc 572
            |||||| || || || || || || | ||||||||||| |||||| ||||| ||||| | 
Sbjct: 959  gtactctggagcccgtccgccaggaaccacaagcgcgtcgtagctcgaagcatccacact 900

                                                                   
Query: 573  gtcaaacgacgcgttcagagcgaaatcatgaccaggcttntcgctgtatgtctgg 627
              ||||||||||  ||||||  ||||| || |||||||| |||||||| ||||||
Sbjct: 899  tccaaacgacgctgtcagagtaaaatcgtggccaggcttctcgctgtaggtctgg 845



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>emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004A17,
             complete sequence
          Length = 159894

 Score =  161 bits (81), Expect = 3e-36
 Identities = 153/177 (86%)
 Strand = Plus / Plus

                                                                         
Query: 213   gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 272
             |||||||||||||||||| ||||  |||||||||||||  | ||||||||||||  | ||
Sbjct: 26311 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 26370

                                                                         
Query: 273   ccacgccgcgcccgtcaccaggttgccgtcggtgaagcaacggtggatcgggtccggctc 332
             ||| |||||||| ||||| |||||||||||||||||||| ||||  || || |  |||||
Sbjct: 26371 ccatgccgcgccggtcacaaggttgccgtcggtgaagcagcggtcaatgggattgggctc 26430

                                                                      
Query: 333   cagccacgtccccccgcccagcaccacgttcagcttcaccgccgggtacgccgtgca 389
             |||||| ||| ||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 26431 cagccatgtcgccccgccaagcaccacgttcagcttcaccgcaggatacgccgtgca 26487



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 194/247 (78%)
 Strand = Plus / Plus

                                                                         
Query: 398   cctgaagaaccccagcagcagccaggatctgctgcccgtggcagatcgacgcgaccggct 457
             ||||||| || ||||||||||  |  ||||| || || ||||| || || ||||| ||||
Sbjct: 26951 cctgaaggactccagcagcagataaaatctgttggccatggcaaattgaggcgactggct 27010

                                                                         
Query: 458   ttccgttgtccatgaaccccttggccaggctaaggaccttctcgttcaaggcaaggtact 517
             || | || |||||||| |||||  | ||||||| ||| || |||||||  ||||||||||
Sbjct: 27011 ttgctttatccatgaagcccttcacaaggctaatgactttatcgttcagtgcaaggtact 27070

                                                                         
Query: 518   cgggggcacgcccaccggggatcacaagcgcgtngtagcttgaagcgtccacgccgtcaa 577
             | || || || ||||| || || ||||| || |  |||||||| || |||||   |||||
Sbjct: 27071 caggagcccgtccaccaggaattacaagtgcatcatagcttgatgcatccacattgtcaa 27130

                                                                         
Query: 578   acgacgcgttcagagcgaaatcatgaccaggcttntcgctgtatgtctggncnccctcaa 637
             | || ||  ||| ||| ||||| ||||||||||| ||||||||||| ||| | || ||||
Sbjct: 27131 atgatgctgtcaaagcaaaatcgtgaccaggcttctcgctgtatgtttggtcaccttcaa 27190

                    
Query: 638   agtcatg 644
             |||||||
Sbjct: 27191 agtcatg 27197



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  161 bits (81), Expect = 3e-36
 Identities = 153/177 (86%)
 Strand = Plus / Plus

                                                                            
Query: 213      gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 272
                |||||||||||||||||| ||||  |||||||||||||  | ||||||||||||  | ||
Sbjct: 34301908 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 34301967

                                                                            
Query: 273      ccacgccgcgcccgtcaccaggttgccgtcggtgaagcaacggtggatcgggtccggctc 332
                ||| |||||||| ||||| |||||||||||||||||||| ||||  || || |  |||||
Sbjct: 34301968 ccatgccgcgccggtcacaaggttgccgtcggtgaagcagcggtcaatgggattgggctc 34302027

                                                                         
Query: 333      cagccacgtccccccgcccagcaccacgttcagcttcaccgccgggtacgccgtgca 389
                |||||| ||| ||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 34302028 cagccatgtcgccccgccaagcaccacgttcagcttcaccgcaggatacgccgtgca 34302084



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 194/247 (78%)
 Strand = Plus / Plus

                                                                            
Query: 398      cctgaagaaccccagcagcagccaggatctgctgcccgtggcagatcgacgcgaccggct 457
                ||||||| || ||||||||||  |  ||||| || || ||||| || || ||||| ||||
Sbjct: 34302548 cctgaaggactccagcagcagataaaatctgttggccatggcaaattgaggcgactggct 34302607

                                                                            
Query: 458      ttccgttgtccatgaaccccttggccaggctaaggaccttctcgttcaaggcaaggtact 517
                || | || |||||||| |||||  | ||||||| ||| || |||||||  ||||||||||
Sbjct: 34302608 ttgctttatccatgaagcccttcacaaggctaatgactttatcgttcagtgcaaggtact 34302667

                                                                            
Query: 518      cgggggcacgcccaccggggatcacaagcgcgtngtagcttgaagcgtccacgccgtcaa 577
                | || || || ||||| || || ||||| || |  |||||||| || |||||   |||||
Sbjct: 34302668 caggagcccgtccaccaggaattacaagtgcatcatagcttgatgcatccacattgtcaa 34302727

                                                                            
Query: 578      acgacgcgttcagagcgaaatcatgaccaggcttntcgctgtatgtctggncnccctcaa 637
                | || ||  ||| ||| ||||| ||||||||||| ||||||||||| ||| | || ||||
Sbjct: 34302728 atgatgctgtcaaagcaaaatcgtgaccaggcttctcgctgtatgtttggtcaccttcaa 34302787

                       
Query: 638      agtcatg 644
                |||||||
Sbjct: 34302788 agtcatg 34302794



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>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete
             sequence
          Length = 95419

 Score =  161 bits (81), Expect = 3e-36
 Identities = 153/177 (86%)
 Strand = Plus / Plus

                                                                         
Query: 213   gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 272
             |||||||||||||||||| ||||  |||||||||||||  | ||||||||||||  | ||
Sbjct: 74231 gaaggagaccttgatgcctagcaatgccatgagctgggagatgaactccgggtggccagg 74290

                                                                         
Query: 273   ccacgccgcgcccgtcaccaggttgccgtcggtgaagcaacggtggatcgggtccggctc 332
             ||| |||||||| ||||| |||||||||||||||||||| ||||  || || |  |||||
Sbjct: 74291 ccatgccgcgccggtcacaaggttgccgtcggtgaagcagcggtcaatgggattgggctc 74350

                                                                      
Query: 333   cagccacgtccccccgcccagcaccacgttcagcttcaccgccgggtacgccgtgca 389
             |||||| ||| ||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 74351 cagccatgtcgccccgccaagcaccacgttcagcttcaccgcaggatacgccgtgca 74407



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 194/247 (78%)
 Strand = Plus / Plus

                                                                         
Query: 398   cctgaagaaccccagcagcagccaggatctgctgcccgtggcagatcgacgcgaccggct 457
             ||||||| || ||||||||||  |  ||||| || || ||||| || || ||||| ||||
Sbjct: 74871 cctgaaggactccagcagcagataaaatctgttggccatggcaaattgaggcgactggct 74930

                                                                         
Query: 458   ttccgttgtccatgaaccccttggccaggctaaggaccttctcgttcaaggcaaggtact 517
             || | || |||||||| |||||  | ||||||| ||| || |||||||  ||||||||||
Sbjct: 74931 ttgctttatccatgaagcccttcacaaggctaatgactttatcgttcagtgcaaggtact 74990

                                                                         
Query: 518   cgggggcacgcccaccggggatcacaagcgcgtngtagcttgaagcgtccacgccgtcaa 577
             | || || || ||||| || || ||||| || |  |||||||| || |||||   |||||
Sbjct: 74991 caggagcccgtccaccaggaattacaagtgcatcatagcttgatgcatccacattgtcaa 75050

                                                                         
Query: 578   acgacgcgttcagagcgaaatcatgaccaggcttntcgctgtatgtctggncnccctcaa 637
             | || ||  ||| ||| ||||| ||||||||||| ||||||||||| ||| | || ||||
Sbjct: 75051 atgatgctgtcaaagcaaaatcgtgaccaggcttctcgctgtatgtttggtcaccttcaa 75110

                    
Query: 638   agtcatg 644
             |||||||
Sbjct: 75111 agtcatg 75117



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>gb|DQ351282.1| Oryza rufipogon unknown gene
          Length = 14907

 Score =  153 bits (77), Expect = 8e-34
 Identities = 152/177 (85%)
 Strand = Plus / Plus

                                                                        
Query: 213  gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 272
            |||||||||||||||||| ||||  |||||||||||||  | ||||||||||||  | ||
Sbjct: 9500 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 9559

                                                                        
Query: 273  ccacgccgcgcccgtcaccaggttgccgtcggtgaagcaacggtggatcgggtccggctc 332
            ||| |||||||| ||||| |||||||||||||||||||| ||||  || || |  |||||
Sbjct: 9560 ccatgccgcgccggtcacaaggttgccgtcggtgaagcagcggtcaatgggattgggctc 9619

                                                                     
Query: 333  cagccacgtccccccgcccagcaccacgttcagcttcaccgccgggtacgccgtgca 389
            |||||| ||| ||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct: 9620 cagccatgtcgccccgccaagcaccacgttgagcttcaccgcaggatacgccgtgca 9676



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 194/247 (78%)
 Strand = Plus / Plus

                                                                         
Query: 398   cctgaagaaccccagcagcagccaggatctgctgcccgtggcagatcgacgcgaccggct 457
             ||||||| || ||||||||||  |  ||||| || || ||||| || || ||||| ||||
Sbjct: 10136 cctgaaggactccagcagcagataaaatctgttggccatggcaaattgaggcgactggct 10195

                                                                         
Query: 458   ttccgttgtccatgaaccccttggccaggctaaggaccttctcgttcaaggcaaggtact 517
             || | || |||||||| |||||  | ||||||| ||| || |||||||  ||||||||||
Sbjct: 10196 ttgctttatccatgaagcccttcacaaggctaatgactttatcgttcagtgcaaggtact 10255

                                                                         
Query: 518   cgggggcacgcccaccggggatcacaagcgcgtngtagcttgaagcgtccacgccgtcaa 577
             | || || || ||||| || || ||||| || |  |||||||| || |||||   |||||
Sbjct: 10256 caggagcccgtccaccaggaattacaagtgcatcatagcttgatgcatccacattgtcaa 10315

                                                                         
Query: 578   acgacgcgttcagagcgaaatcatgaccaggcttntcgctgtatgtctggncnccctcaa 637
             | || ||  ||| ||| ||||| ||||||||||| ||||||||||| ||| | || ||||
Sbjct: 10316 atgatgctgtcaaagcaaaatcgtgaccaggcttctcgctgtatgtttggtcaccttcaa 10375

                    
Query: 638   agtcatg 644
             |||||||
Sbjct: 10376 agtcatg 10382



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>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12
          Length = 347071

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                            
Query: 260    ccgggtgcgcgggccacgccgcgcccgtcaccaggttgccgtcggt 305
              |||| |||||||||||||||| | | || |||||||||||||||||
Sbjct: 229168 ccggatgcgcgggccacgccggggcggtgaccaggttgccgtcggt 229123



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>ref|XM_368328.1| Magnaporthe grisea 70-15 chromosome VI predicted protein
           (MG00916.4) partial mRNA
          Length = 378

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 230 cgagcagggccatgagctgggc 251
           ||||||||||||||||||||||
Sbjct: 40  cgagcagggccatgagctgggc 19



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>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                            
Query: 260    ccgggtgcgcgggccacgccgcgcccgtcaccaggttgccgtcggt 305
              |||| ||||||||||| |||| | | || |||||||||||||||||
Sbjct: 133200 ccggatgcgcgggccatgccggggcggtgaccaggttgccgtcggt 133155



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>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                            
Query: 260    ccgggtgcgcgggccacgccgcgcccgtcaccaggttgccgtcggt 305
              |||| ||||||||||| |||| | | || |||||||||||||||||
Sbjct: 245570 ccggatgcgcgggccatgccggggcggtgaccaggttgccgtcggt 245525



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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 65/80 (81%)
 Strand = Plus / Minus

                                                                           
Query: 511     aggtactcgggggcacgcccaccggggatcacaagcgcgtngtagcttgaagcgtccacg 570
               ||||| ||||||||||| || || | |||| | ||||||| |||||  || ||||| |||
Sbjct: 3214235 aggtattcgggggcacggccgcccgcgatcgcgagcgcgtcgtagcgcgatgcgtcgacg 3214176

                                   
Query: 571     ccgtcaaacgacgcgttcag 590
                |||| |||| |||||||||
Sbjct: 3214175 tcgtcgaacgccgcgttcag 3214156



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>gb|AE009024.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 50 of
            256 of the complete sequence
          Length = 10029

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 284  ccgtcaccaggttgccgtcgg 304
            |||||||||||||||||||||
Sbjct: 4752 ccgtcaccaggttgccgtcgg 4772



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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 284    ccgtcaccaggttgccgtcgg 304
              |||||||||||||||||||||
Sbjct: 540114 ccgtcaccaggttgccgtcgg 540134



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 433     ccgtggcagatcgacgcgaccggctttccgttgtccatgaa 473
               |||||||||||||| |||||||| || ||| || |||||||
Sbjct: 8623003 ccgtggcagatcgatgcgaccggtttcccgctggccatgaa 8623043



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>gb|U95165.1|ATU95165 Agrobacterium tumefaciens FlaD (flaD), FlhB (flhB), FliG (fliG), FliN
             (fliN), FliM (fliM), MotA (motA), FlgF (flgF), FliI
             (fliI), FlgB (flgB), FlgC (flgC), FliE (fliE), FlgG
             (flgG), FlgA (flgA), FlgI (flgI), FlgH (flgH), FliL
             (fliL), FliP (fliP), FlaA (flaA), FlaB (flaB) and FlaC
             (flaC) genes, complete cds
          Length = 21846

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 284   ccgtcaccaggttgccgtcgg 304
             |||||||||||||||||||||
Sbjct: 12891 ccgtcaccaggttgccgtcgg 12871



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>gb|U39941.1|ATU39941 Agrobacterium tumefaciens flagellar gene region, flagellar basal body
            components (flgB, flgC, fliE, flgG), P-ring subunit
            (flgI), L-ring subunit (flgH), and FliP (fliP) genes,
            complete cds
          Length = 7205

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 284  ccgtcaccaggttgccgtcgg 304
            |||||||||||||||||||||
Sbjct: 2299 ccgtcaccaggttgccgtcgg 2279



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>ref|NM_188637.1| Oryza sativa (japonica cultivar-group), Ozsa8240 predicted mRNA
          Length = 1671

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 cgcgggccacgccgcgcccg 286
           ||||||||||||||||||||
Sbjct: 186 cgcgggccacgccgcgcccg 167



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>gb|AC162528.5| Mus musculus BAC clone RP23-4P1 from chromosome 5, complete sequence
          Length = 219218

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 234    cagggccatgagctgggcca 253
              ||||||||||||||||||||
Sbjct: 123528 cagggccatgagctgggcca 123509



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>gb|AC151577.2| Mus musculus BAC clone RP23-371D23 from chromosome 5, complete sequence
          Length = 206735

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 234    cagggccatgagctgggcca 253
              ||||||||||||||||||||
Sbjct: 149931 cagggccatgagctgggcca 149950



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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 275     acgccgcgcccgtcaccaggttgc 298
               |||||||||||||||| |||||||
Sbjct: 2199666 acgccgcgcccgtcacgaggttgc 2199643



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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 275    acgccgcgcccgtcaccaggttgc 298
              |||||||||||||||| |||||||
Sbjct: 361289 acgccgcgcccgtcacgaggttgc 361266



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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                   
Query: 490     aggaccttctcgttcaaggcaaggtactcgggggcacgcccaccggggatca 541
               |||||||| ||||||| |   ||||| || |||||||| |||||||||||||
Sbjct: 1536827 aggaccttttcgttcaggcgcaggtattccggggcacggccaccggggatca 1536776



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 230    cgagcagggccatgagctgggcca 253
              ||||||||||| ||||||||||||
Sbjct: 206260 cgagcagggccttgagctgggcca 206283



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>dbj|AB244625.1| Hexagrammos octogrammus genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2,
            28S rRNA
          Length = 1217

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 262  gggtgcgcgggccacgccgc 281
            ||||||||||||||||||||
Sbjct: 1125 gggtgcgcgggccacgccgc 1144



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>gb|AC026443.4| Homo sapiens chromosome 5 clone CTD-2296H22, complete sequence
          Length = 118562

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   gttgcatctgtgttgtatat 172
             ||||||||||||||||||||
Sbjct: 42582 gttgcatctgtgttgtatat 42563



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>gb|AY129331.1| Mycobacteriophage CJW1, complete genome
          Length = 75931

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   tgagctgggccacgaactcc 261
             ||||||||||||||||||||
Sbjct: 28815 tgagctgggccacgaactcc 28796



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>dbj|AK019523.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
            library, clone:4833439F03 product:unclassifiable, full
            insert sequence
          Length = 2472

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 234  cagggccatgagctgggcca 253
            ||||||||||||||||||||
Sbjct: 1144 cagggccatgagctgggcca 1125



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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 275     acgccgcgcccgtcaccaggttgc 298
               |||||||||||||||| |||||||
Sbjct: 1626998 acgccgcgcccgtcacgaggttgc 1627021



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>gb|AF377927.1|AF377927 Sclerotinia sclerotiorum clone 113-4 microsatellite sequence
          Length = 394

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 161 tgtgttgtatatcatgtgatgaaa 184
           ||||||||||||||||||| ||||
Sbjct: 238 tgtgttgtatatcatgtgaagaaa 215



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>emb|BX465227.3| Zebrafish DNA sequence from clone RP71-40K24 in linkage group 17,
             complete sequence
          Length = 161395

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   tatgttgcatctgtgttgta 169
             ||||||||||||||||||||
Sbjct: 93637 tatgttgcatctgtgttgta 93656



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 267     cgcgggccacgccgcgcccg 286
               ||||||||||||||||||||
Sbjct: 7356392 cgcgggccacgccgcgcccg 7356411



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 354     caccacgttcagcttcaccg 373
               ||||||||||||||||||||
Sbjct: 2092513 caccacgttcagcttcaccg 2092494



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 345    cccgcccagcaccacgttca 364
              ||||||||||||||||||||
Sbjct: 348392 cccgcccagcaccacgttca 348411



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>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0702F03
          Length = 141111

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   cgcgggccacgccgcgcccg 286
             ||||||||||||||||||||
Sbjct: 17420 cgcgggccacgccgcgcccg 17439



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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 332     ccagccacgtccccccgcccagcaccac 359
               ||||||||||| || |||||||||||||
Sbjct: 1928249 ccagccacgtcaccgcgcccagcaccac 1928222



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 286    gtcaccaggttgccgtcggt 305
              ||||||||||||||||||||
Sbjct: 443688 gtcaccaggttgccgtcggt 443707



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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 260     ccgggtgcgcgggccacgccgcgcccgtcaccaggttgcc 299
               |||||||||||||||| ||||   | ||||||||||||||
Sbjct: 1035702 ccgggtgcgcgggccatgccggtgcggtcaccaggttgcc 1035663


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,213,962
Number of Sequences: 3902068
Number of extensions: 4213962
Number of successful extensions: 77564
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76457
Number of HSP's gapped (non-prelim): 1099
length of query: 644
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 621
effective length of database: 17,143,297,704
effective search space: 10645987874184
effective search space used: 10645987874184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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