| Clone Name | rbaal31l05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474305.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1164 Score = 222 bits (112), Expect = 1e-54 Identities = 351/432 (81%) Strand = Plus / Minus Query: 213 gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 272 |||||||||||||||||| |||| ||||||||||||| | |||||||||||| | || Sbjct: 1161 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 1102 Query: 273 ccacgccgcgcccgtcaccaggttgccgtcggtgaagcaacggtggatcgggtccggctc 332 ||| |||||||| ||||| |||||||||||||||||||| |||| || || | ||||| Sbjct: 1101 ccatgccgcgccggtcacaaggttgccgtcggtgaagcagcggtcaatgggattgggctc 1042 Query: 333 cagccacgtccccccgcccagcaccacgttcagcttcaccgccgggtacgccgtgcacct 392 |||||| ||| ||||||| ||||||||||||||||||||||| || ||||||||||| | Sbjct: 1041 cagccatgtcgccccgccaagcaccacgttcagcttcaccgcaggatacgccgtgcattt 982 Query: 393 ccggccctgaagaaccccagcagcagccaggatctgctgcccgtggcagatcgacgcgac 452 || |||||||| || |||||||||| | ||||| || || ||||| || || ||||| Sbjct: 981 ccttccctgaaggactccagcagcagataaaatctgttggccatggcaaattgaggcgac 922 Query: 453 cggctttccgttgtccatgaaccccttggccaggctaaggaccttctcgttcaaggcaag 512 |||||| | || |||||||| ||||| | ||||||| ||| || ||||||| ||||| Sbjct: 921 tggctttgctttatccatgaagcccttcacaaggctaatgactttatcgttcagtgcaag 862 Query: 513 gtactcgggggcacgcccaccggggatcacaagcgcgtngtagcttgaagcgtccacgcc 572 |||||| || || || ||||| || || ||||| || | |||||||| || ||||| Sbjct: 861 gtactcaggagcccgtccaccaggaattacaagtgcatcatagcttgatgcatccacatt 802 Query: 573 gtcaaacgacgcgttcagagcgaaatcatgaccaggcttntcgctgtatgtctggncncc 632 |||||| || || ||| ||| ||||| ||||||||||| ||||||||||| ||| | || Sbjct: 801 gtcaaatgatgctgtcaaagcaaaatcgtgaccaggcttctcgctgtatgtttggtcacc 742 Query: 633 ctcaaagtcatg 644 ||||||||||| Sbjct: 741 ttcaaagtcatg 730
>dbj|AK100753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118M23, full insert sequence Length = 1368 Score = 222 bits (112), Expect = 1e-54 Identities = 351/432 (81%) Strand = Plus / Minus Query: 213 gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 272 |||||||||||||||||| |||| ||||||||||||| | |||||||||||| | || Sbjct: 1221 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 1162 Query: 273 ccacgccgcgcccgtcaccaggttgccgtcggtgaagcaacggtggatcgggtccggctc 332 ||| |||||||| ||||| |||||||||||||||||||| |||| || || | ||||| Sbjct: 1161 ccatgccgcgccggtcacaaggttgccgtcggtgaagcagcggtcaatgggattgggctc 1102 Query: 333 cagccacgtccccccgcccagcaccacgttcagcttcaccgccgggtacgccgtgcacct 392 |||||| ||| ||||||| ||||||||||||||||||||||| || ||||||||||| | Sbjct: 1101 cagccatgtcgccccgccaagcaccacgttcagcttcaccgcaggatacgccgtgcattt 1042 Query: 393 ccggccctgaagaaccccagcagcagccaggatctgctgcccgtggcagatcgacgcgac 452 || |||||||| || |||||||||| | ||||| || || ||||| || || ||||| Sbjct: 1041 ccttccctgaaggactccagcagcagataaaatctgttggccatggcaaattgaggcgac 982 Query: 453 cggctttccgttgtccatgaaccccttggccaggctaaggaccttctcgttcaaggcaag 512 |||||| | || |||||||| ||||| | ||||||| ||| || ||||||| ||||| Sbjct: 981 tggctttgctttatccatgaagcccttcacaaggctaatgactttatcgttcagtgcaag 922 Query: 513 gtactcgggggcacgcccaccggggatcacaagcgcgtngtagcttgaagcgtccacgcc 572 |||||| || || || ||||| || || ||||| || | |||||||| || ||||| Sbjct: 921 gtactcaggagcccgtccaccaggaattacaagtgcatcatagcttgatgcatccacatt 862 Query: 573 gtcaaacgacgcgttcagagcgaaatcatgaccaggcttntcgctgtatgtctggncncc 632 |||||| || || ||| ||| ||||| ||||||||||| ||||||||||| ||| | || Sbjct: 861 gtcaaatgatgctgtcaaagcaaaatcgtgaccaggcttctcgctgtatgtttggtcacc 802 Query: 633 ctcaaagtcatg 644 ||||||||||| Sbjct: 801 ttcaaagtcatg 790
>gb|BT016784.1| Zea mays clone Contig617 mRNA sequence Length = 1616 Score = 192 bits (97), Expect = 1e-45 Identities = 335/415 (80%) Strand = Plus / Minus Query: 213 gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 272 |||||| ||||||| |||||||| ||||||||||||| ||||||||| ||||| | || Sbjct: 1285 gaaggaaaccttgacgccgagcaacgccatgagctgggacacgaactctgggtggcctgg 1226 Query: 273 ccacgccgcgcccgtcaccaggttgccgtcggtgaagcaacggtggatcgggtccggctc 332 ||| || ||||| ||||| |||||||| ||||||||||| |||||||||||||| ||||| Sbjct: 1225 ccaggctgcgccggtcacaaggttgccatcggtgaagcagcggtggatcgggtcaggctc 1166 Query: 333 cagccacgtccccccgcccagcaccacgttcagcttcaccgccgggtacgccgtgcacct 392 |||||| ||||| || || |||| ||||||||||||||| || ||||| || |||||| | Sbjct: 1165 cagccaggtcccgccaccgagcaacacgttcagcttcacggctgggtatgcggtgcactt 1106 Query: 393 ccggccctgaagaaccccagcagcagccaggatctgctgcccgtggcagatcgacgcgac 452 | |||| || || || ||||| | | |||||||| ||||||||||||||||||| Sbjct: 1105 cttccccttgaggactccggcagcggataatatctgctggccgtggcagatcgacgcgat 1046 Query: 453 cggctttccgttgtccatgaaccccttggccaggctaaggaccttctcgttcaaggcaag 512 ||||||||| | ||| ||| |||| ||| ||| | |||||| ||||||| || || Sbjct: 1045 tggctttccgctctccgcgaaggccttcaccaagctgatgaccttatcgttcagagccag 986 Query: 513 gtactcgggggcacgcccaccggggatcacaagcgcgtngtagcttgaagcgtccacgcc 572 |||||| || || || || || || | ||||||||||| |||||| ||||| ||||| | Sbjct: 985 gtactctggagcccgtccgccaggaaccacaagcgcgtcgtagctcgaagcatccacact 926 Query: 573 gtcaaacgacgcgttcagagcgaaatcatgaccaggcttntcgctgtatgtctgg 627 |||||||||| |||||| ||||| || |||||||| |||||||| |||||| Sbjct: 925 tccaaacgacgctgtcagagtaaaatcgtggccaggcttctcgctgtaggtctgg 871
>gb|AY104354.1| Zea mays PCO108571 mRNA sequence Length = 1633 Score = 192 bits (97), Expect = 1e-45 Identities = 335/415 (80%) Strand = Plus / Minus Query: 213 gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 272 |||||| ||||||| |||||||| ||||||||||||| ||||||||| ||||| | || Sbjct: 1259 gaaggaaaccttgacgccgagcaacgccatgagctgggacacgaactctgggtggcctgg 1200 Query: 273 ccacgccgcgcccgtcaccaggttgccgtcggtgaagcaacggtggatcgggtccggctc 332 ||| || ||||| ||||| |||||||| ||||||||||| |||||||||||||| ||||| Sbjct: 1199 ccaggctgcgccggtcacaaggttgccatcggtgaagcagcggtggatcgggtcaggctc 1140 Query: 333 cagccacgtccccccgcccagcaccacgttcagcttcaccgccgggtacgccgtgcacct 392 |||||| ||||| || || |||| ||||||||||||||| || ||||| || |||||| | Sbjct: 1139 cagccaggtcccgccaccgagcaacacgttcagcttcacggctgggtatgcggtgcactt 1080 Query: 393 ccggccctgaagaaccccagcagcagccaggatctgctgcccgtggcagatcgacgcgac 452 | |||| || || || ||||| | | |||||||| ||||||||||||||||||| Sbjct: 1079 cttccccttgaggactccggcagcggataatatctgctggccgtggcagatcgacgcgat 1020 Query: 453 cggctttccgttgtccatgaaccccttggccaggctaaggaccttctcgttcaaggcaag 512 ||||||||| | ||| ||| |||| ||| ||| | |||||| ||||||| || || Sbjct: 1019 tggctttccgctctccgcgaaggccttcaccaagctgatgaccttatcgttcagagccag 960 Query: 513 gtactcgggggcacgcccaccggggatcacaagcgcgtngtagcttgaagcgtccacgcc 572 |||||| || || || || || || | ||||||||||| |||||| ||||| ||||| | Sbjct: 959 gtactctggagcccgtccgccaggaaccacaagcgcgtcgtagctcgaagcatccacact 900 Query: 573 gtcaaacgacgcgttcagagcgaaatcatgaccaggcttntcgctgtatgtctgg 627 |||||||||| |||||| ||||| || |||||||| |||||||| |||||| Sbjct: 899 tccaaacgacgctgtcagagtaaaatcgtggccaggcttctcgctgtaggtctgg 845
>emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004A17, complete sequence Length = 159894 Score = 161 bits (81), Expect = 3e-36 Identities = 153/177 (86%) Strand = Plus / Plus Query: 213 gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 272 |||||||||||||||||| |||| ||||||||||||| | |||||||||||| | || Sbjct: 26311 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 26370 Query: 273 ccacgccgcgcccgtcaccaggttgccgtcggtgaagcaacggtggatcgggtccggctc 332 ||| |||||||| ||||| |||||||||||||||||||| |||| || || | ||||| Sbjct: 26371 ccatgccgcgccggtcacaaggttgccgtcggtgaagcagcggtcaatgggattgggctc 26430 Query: 333 cagccacgtccccccgcccagcaccacgttcagcttcaccgccgggtacgccgtgca 389 |||||| ||| ||||||| ||||||||||||||||||||||| || ||||||||||| Sbjct: 26431 cagccatgtcgccccgccaagcaccacgttcagcttcaccgcaggatacgccgtgca 26487 Score = 77.8 bits (39), Expect = 4e-11 Identities = 194/247 (78%) Strand = Plus / Plus Query: 398 cctgaagaaccccagcagcagccaggatctgctgcccgtggcagatcgacgcgaccggct 457 ||||||| || |||||||||| | ||||| || || ||||| || || ||||| |||| Sbjct: 26951 cctgaaggactccagcagcagataaaatctgttggccatggcaaattgaggcgactggct 27010 Query: 458 ttccgttgtccatgaaccccttggccaggctaaggaccttctcgttcaaggcaaggtact 517 || | || |||||||| ||||| | ||||||| ||| || ||||||| |||||||||| Sbjct: 27011 ttgctttatccatgaagcccttcacaaggctaatgactttatcgttcagtgcaaggtact 27070 Query: 518 cgggggcacgcccaccggggatcacaagcgcgtngtagcttgaagcgtccacgccgtcaa 577 | || || || ||||| || || ||||| || | |||||||| || ||||| ||||| Sbjct: 27071 caggagcccgtccaccaggaattacaagtgcatcatagcttgatgcatccacattgtcaa 27130 Query: 578 acgacgcgttcagagcgaaatcatgaccaggcttntcgctgtatgtctggncnccctcaa 637 | || || ||| ||| ||||| ||||||||||| ||||||||||| ||| | || |||| Sbjct: 27131 atgatgctgtcaaagcaaaatcgtgaccaggcttctcgctgtatgtttggtcaccttcaa 27190 Query: 638 agtcatg 644 ||||||| Sbjct: 27191 agtcatg 27197
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 161 bits (81), Expect = 3e-36 Identities = 153/177 (86%) Strand = Plus / Plus Query: 213 gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 272 |||||||||||||||||| |||| ||||||||||||| | |||||||||||| | || Sbjct: 34301908 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 34301967 Query: 273 ccacgccgcgcccgtcaccaggttgccgtcggtgaagcaacggtggatcgggtccggctc 332 ||| |||||||| ||||| |||||||||||||||||||| |||| || || | ||||| Sbjct: 34301968 ccatgccgcgccggtcacaaggttgccgtcggtgaagcagcggtcaatgggattgggctc 34302027 Query: 333 cagccacgtccccccgcccagcaccacgttcagcttcaccgccgggtacgccgtgca 389 |||||| ||| ||||||| ||||||||||||||||||||||| || ||||||||||| Sbjct: 34302028 cagccatgtcgccccgccaagcaccacgttcagcttcaccgcaggatacgccgtgca 34302084 Score = 77.8 bits (39), Expect = 4e-11 Identities = 194/247 (78%) Strand = Plus / Plus Query: 398 cctgaagaaccccagcagcagccaggatctgctgcccgtggcagatcgacgcgaccggct 457 ||||||| || |||||||||| | ||||| || || ||||| || || ||||| |||| Sbjct: 34302548 cctgaaggactccagcagcagataaaatctgttggccatggcaaattgaggcgactggct 34302607 Query: 458 ttccgttgtccatgaaccccttggccaggctaaggaccttctcgttcaaggcaaggtact 517 || | || |||||||| ||||| | ||||||| ||| || ||||||| |||||||||| Sbjct: 34302608 ttgctttatccatgaagcccttcacaaggctaatgactttatcgttcagtgcaaggtact 34302667 Query: 518 cgggggcacgcccaccggggatcacaagcgcgtngtagcttgaagcgtccacgccgtcaa 577 | || || || ||||| || || ||||| || | |||||||| || ||||| ||||| Sbjct: 34302668 caggagcccgtccaccaggaattacaagtgcatcatagcttgatgcatccacattgtcaa 34302727 Query: 578 acgacgcgttcagagcgaaatcatgaccaggcttntcgctgtatgtctggncnccctcaa 637 | || || ||| ||| ||||| ||||||||||| ||||||||||| ||| | || |||| Sbjct: 34302728 atgatgctgtcaaagcaaaatcgtgaccaggcttctcgctgtatgtttggtcaccttcaa 34302787 Query: 638 agtcatg 644 ||||||| Sbjct: 34302788 agtcatg 34302794
>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete sequence Length = 95419 Score = 161 bits (81), Expect = 3e-36 Identities = 153/177 (86%) Strand = Plus / Plus Query: 213 gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 272 |||||||||||||||||| |||| ||||||||||||| | |||||||||||| | || Sbjct: 74231 gaaggagaccttgatgcctagcaatgccatgagctgggagatgaactccgggtggccagg 74290 Query: 273 ccacgccgcgcccgtcaccaggttgccgtcggtgaagcaacggtggatcgggtccggctc 332 ||| |||||||| ||||| |||||||||||||||||||| |||| || || | ||||| Sbjct: 74291 ccatgccgcgccggtcacaaggttgccgtcggtgaagcagcggtcaatgggattgggctc 74350 Query: 333 cagccacgtccccccgcccagcaccacgttcagcttcaccgccgggtacgccgtgca 389 |||||| ||| ||||||| ||||||||||||||||||||||| || ||||||||||| Sbjct: 74351 cagccatgtcgccccgccaagcaccacgttcagcttcaccgcaggatacgccgtgca 74407 Score = 77.8 bits (39), Expect = 4e-11 Identities = 194/247 (78%) Strand = Plus / Plus Query: 398 cctgaagaaccccagcagcagccaggatctgctgcccgtggcagatcgacgcgaccggct 457 ||||||| || |||||||||| | ||||| || || ||||| || || ||||| |||| Sbjct: 74871 cctgaaggactccagcagcagataaaatctgttggccatggcaaattgaggcgactggct 74930 Query: 458 ttccgttgtccatgaaccccttggccaggctaaggaccttctcgttcaaggcaaggtact 517 || | || |||||||| ||||| | ||||||| ||| || ||||||| |||||||||| Sbjct: 74931 ttgctttatccatgaagcccttcacaaggctaatgactttatcgttcagtgcaaggtact 74990 Query: 518 cgggggcacgcccaccggggatcacaagcgcgtngtagcttgaagcgtccacgccgtcaa 577 | || || || ||||| || || ||||| || | |||||||| || ||||| ||||| Sbjct: 74991 caggagcccgtccaccaggaattacaagtgcatcatagcttgatgcatccacattgtcaa 75050 Query: 578 acgacgcgttcagagcgaaatcatgaccaggcttntcgctgtatgtctggncnccctcaa 637 | || || ||| ||| ||||| ||||||||||| ||||||||||| ||| | || |||| Sbjct: 75051 atgatgctgtcaaagcaaaatcgtgaccaggcttctcgctgtatgtttggtcaccttcaa 75110 Query: 638 agtcatg 644 ||||||| Sbjct: 75111 agtcatg 75117
>gb|DQ351282.1| Oryza rufipogon unknown gene Length = 14907 Score = 153 bits (77), Expect = 8e-34 Identities = 152/177 (85%) Strand = Plus / Plus Query: 213 gaaggagaccttgatgccgagcagggccatgagctgggccacgaactccgggtgcgcggg 272 |||||||||||||||||| |||| ||||||||||||| | |||||||||||| | || Sbjct: 9500 gaaggagaccttgatgccaagcaatgccatgagctgggagatgaactccgggtggccagg 9559 Query: 273 ccacgccgcgcccgtcaccaggttgccgtcggtgaagcaacggtggatcgggtccggctc 332 ||| |||||||| ||||| |||||||||||||||||||| |||| || || | ||||| Sbjct: 9560 ccatgccgcgccggtcacaaggttgccgtcggtgaagcagcggtcaatgggattgggctc 9619 Query: 333 cagccacgtccccccgcccagcaccacgttcagcttcaccgccgggtacgccgtgca 389 |||||| ||| ||||||| ||||||||||| ||||||||||| || ||||||||||| Sbjct: 9620 cagccatgtcgccccgccaagcaccacgttgagcttcaccgcaggatacgccgtgca 9676 Score = 77.8 bits (39), Expect = 4e-11 Identities = 194/247 (78%) Strand = Plus / Plus Query: 398 cctgaagaaccccagcagcagccaggatctgctgcccgtggcagatcgacgcgaccggct 457 ||||||| || |||||||||| | ||||| || || ||||| || || ||||| |||| Sbjct: 10136 cctgaaggactccagcagcagataaaatctgttggccatggcaaattgaggcgactggct 10195 Query: 458 ttccgttgtccatgaaccccttggccaggctaaggaccttctcgttcaaggcaaggtact 517 || | || |||||||| ||||| | ||||||| ||| || ||||||| |||||||||| Sbjct: 10196 ttgctttatccatgaagcccttcacaaggctaatgactttatcgttcagtgcaaggtact 10255 Query: 518 cgggggcacgcccaccggggatcacaagcgcgtngtagcttgaagcgtccacgccgtcaa 577 | || || || ||||| || || ||||| || | |||||||| || ||||| ||||| Sbjct: 10256 caggagcccgtccaccaggaattacaagtgcatcatagcttgatgcatccacattgtcaa 10315 Query: 578 acgacgcgttcagagcgaaatcatgaccaggcttntcgctgtatgtctggncnccctcaa 637 | || || ||| ||| ||||| ||||||||||| ||||||||||| ||| | || |||| Sbjct: 10316 atgatgctgtcaaagcaaaatcgtgaccaggcttctcgctgtatgtttggtcaccttcaa 10375 Query: 638 agtcatg 644 ||||||| Sbjct: 10376 agtcatg 10382
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 260 ccgggtgcgcgggccacgccgcgcccgtcaccaggttgccgtcggt 305 |||| |||||||||||||||| | | || ||||||||||||||||| Sbjct: 229168 ccggatgcgcgggccacgccggggcggtgaccaggttgccgtcggt 229123
>ref|XM_368328.1| Magnaporthe grisea 70-15 chromosome VI predicted protein (MG00916.4) partial mRNA Length = 378 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 230 cgagcagggccatgagctgggc 251 |||||||||||||||||||||| Sbjct: 40 cgagcagggccatgagctgggc 19
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 44.1 bits (22), Expect = 0.56 Identities = 40/46 (86%) Strand = Plus / Minus Query: 260 ccgggtgcgcgggccacgccgcgcccgtcaccaggttgccgtcggt 305 |||| ||||||||||| |||| | | || ||||||||||||||||| Sbjct: 133200 ccggatgcgcgggccatgccggggcggtgaccaggttgccgtcggt 133155
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 44.1 bits (22), Expect = 0.56 Identities = 40/46 (86%) Strand = Plus / Minus Query: 260 ccgggtgcgcgggccacgccgcgcccgtcaccaggttgccgtcggt 305 |||| ||||||||||| |||| | | || ||||||||||||||||| Sbjct: 245570 ccggatgcgcgggccatgccggggcggtgaccaggttgccgtcggt 245525
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 2.2 Identities = 65/80 (81%) Strand = Plus / Minus Query: 511 aggtactcgggggcacgcccaccggggatcacaagcgcgtngtagcttgaagcgtccacg 570 ||||| ||||||||||| || || | |||| | ||||||| ||||| || ||||| ||| Sbjct: 3214235 aggtattcgggggcacggccgcccgcgatcgcgagcgcgtcgtagcgcgatgcgtcgacg 3214176 Query: 571 ccgtcaaacgacgcgttcag 590 |||| |||| ||||||||| Sbjct: 3214175 tcgtcgaacgccgcgttcag 3214156
>gb|AE009024.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 50 of 256 of the complete sequence Length = 10029 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 284 ccgtcaccaggttgccgtcgg 304 ||||||||||||||||||||| Sbjct: 4752 ccgtcaccaggttgccgtcgg 4772
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 284 ccgtcaccaggttgccgtcgg 304 ||||||||||||||||||||| Sbjct: 540114 ccgtcaccaggttgccgtcgg 540134
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 433 ccgtggcagatcgacgcgaccggctttccgttgtccatgaa 473 |||||||||||||| |||||||| || ||| || ||||||| Sbjct: 8623003 ccgtggcagatcgatgcgaccggtttcccgctggccatgaa 8623043
>gb|U95165.1|ATU95165 Agrobacterium tumefaciens FlaD (flaD), FlhB (flhB), FliG (fliG), FliN (fliN), FliM (fliM), MotA (motA), FlgF (flgF), FliI (fliI), FlgB (flgB), FlgC (flgC), FliE (fliE), FlgG (flgG), FlgA (flgA), FlgI (flgI), FlgH (flgH), FliL (fliL), FliP (fliP), FlaA (flaA), FlaB (flaB) and FlaC (flaC) genes, complete cds Length = 21846 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 ccgtcaccaggttgccgtcgg 304 ||||||||||||||||||||| Sbjct: 12891 ccgtcaccaggttgccgtcgg 12871
>gb|U39941.1|ATU39941 Agrobacterium tumefaciens flagellar gene region, flagellar basal body components (flgB, flgC, fliE, flgG), P-ring subunit (flgI), L-ring subunit (flgH), and FliP (fliP) genes, complete cds Length = 7205 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 ccgtcaccaggttgccgtcgg 304 ||||||||||||||||||||| Sbjct: 2299 ccgtcaccaggttgccgtcgg 2279
>ref|NM_188637.1| Oryza sativa (japonica cultivar-group), Ozsa8240 predicted mRNA Length = 1671 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 cgcgggccacgccgcgcccg 286 |||||||||||||||||||| Sbjct: 186 cgcgggccacgccgcgcccg 167
>gb|AC162528.5| Mus musculus BAC clone RP23-4P1 from chromosome 5, complete sequence Length = 219218 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 cagggccatgagctgggcca 253 |||||||||||||||||||| Sbjct: 123528 cagggccatgagctgggcca 123509
>gb|AC151577.2| Mus musculus BAC clone RP23-371D23 from chromosome 5, complete sequence Length = 206735 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 cagggccatgagctgggcca 253 |||||||||||||||||||| Sbjct: 149931 cagggccatgagctgggcca 149950
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 acgccgcgcccgtcaccaggttgc 298 |||||||||||||||| ||||||| Sbjct: 2199666 acgccgcgcccgtcacgaggttgc 2199643
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 acgccgcgcccgtcaccaggttgc 298 |||||||||||||||| ||||||| Sbjct: 361289 acgccgcgcccgtcacgaggttgc 361266
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 8.8 Identities = 44/52 (84%) Strand = Plus / Minus Query: 490 aggaccttctcgttcaaggcaaggtactcgggggcacgcccaccggggatca 541 |||||||| ||||||| | ||||| || |||||||| ||||||||||||| Sbjct: 1536827 aggaccttttcgttcaggcgcaggtattccggggcacggccaccggggatca 1536776
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 230 cgagcagggccatgagctgggcca 253 ||||||||||| |||||||||||| Sbjct: 206260 cgagcagggccttgagctgggcca 206283
>dbj|AB244625.1| Hexagrammos octogrammus genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA Length = 1217 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 gggtgcgcgggccacgccgc 281 |||||||||||||||||||| Sbjct: 1125 gggtgcgcgggccacgccgc 1144
>gb|AC026443.4| Homo sapiens chromosome 5 clone CTD-2296H22, complete sequence Length = 118562 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 gttgcatctgtgttgtatat 172 |||||||||||||||||||| Sbjct: 42582 gttgcatctgtgttgtatat 42563
>gb|AY129331.1| Mycobacteriophage CJW1, complete genome Length = 75931 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 tgagctgggccacgaactcc 261 |||||||||||||||||||| Sbjct: 28815 tgagctgggccacgaactcc 28796
>dbj|AK019523.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4833439F03 product:unclassifiable, full insert sequence Length = 2472 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 cagggccatgagctgggcca 253 |||||||||||||||||||| Sbjct: 1144 cagggccatgagctgggcca 1125
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 acgccgcgcccgtcaccaggttgc 298 |||||||||||||||| ||||||| Sbjct: 1626998 acgccgcgcccgtcacgaggttgc 1627021
>gb|AF377927.1|AF377927 Sclerotinia sclerotiorum clone 113-4 microsatellite sequence Length = 394 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 tgtgttgtatatcatgtgatgaaa 184 ||||||||||||||||||| |||| Sbjct: 238 tgtgttgtatatcatgtgaagaaa 215
>emb|BX465227.3| Zebrafish DNA sequence from clone RP71-40K24 in linkage group 17, complete sequence Length = 161395 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 tatgttgcatctgtgttgta 169 |||||||||||||||||||| Sbjct: 93637 tatgttgcatctgtgttgta 93656
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 cgcgggccacgccgcgcccg 286 |||||||||||||||||||| Sbjct: 7356392 cgcgggccacgccgcgcccg 7356411
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 caccacgttcagcttcaccg 373 |||||||||||||||||||| Sbjct: 2092513 caccacgttcagcttcaccg 2092494 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 cccgcccagcaccacgttca 364 |||||||||||||||||||| Sbjct: 348392 cccgcccagcaccacgttca 348411
>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0702F03 Length = 141111 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 cgcgggccacgccgcgcccg 286 |||||||||||||||||||| Sbjct: 17420 cgcgggccacgccgcgcccg 17439
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 332 ccagccacgtccccccgcccagcaccac 359 ||||||||||| || ||||||||||||| Sbjct: 1928249 ccagccacgtcaccgcgcccagcaccac 1928222 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 gtcaccaggttgccgtcggt 305 |||||||||||||||||||| Sbjct: 443688 gtcaccaggttgccgtcggt 443707
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 8.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 260 ccgggtgcgcgggccacgccgcgcccgtcaccaggttgcc 299 |||||||||||||||| |||| | |||||||||||||| Sbjct: 1035702 ccgggtgcgcgggccatgccggtgcggtcaccaggttgcc 1035663 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,213,962 Number of Sequences: 3902068 Number of extensions: 4213962 Number of successful extensions: 77564 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76457 Number of HSP's gapped (non-prelim): 1099 length of query: 644 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 621 effective length of database: 17,143,297,704 effective search space: 10645987874184 effective search space used: 10645987874184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)