>CCD72_XENTR (Q28GR1) Coiled-coil domain-containing protein 72|
          Length = 64

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 15/28 (53%), Positives = 22/28 (78%)
 Frame = -1

Query: 348 KQGGKAKPLKQAKVAEKDYDENDLAYLQ 265
           ++GGK KPLKQ K + KD DE+++A+ Q
Sbjct: 4   REGGKKKPLKQPKKSNKDMDEDEIAFKQ 31

>CCD72_MOUSE (Q8K003) Coiled-coil domain-containing protein 72|
          Length = 64

 Score = 34.3 bits (77), Expect = 0.074
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -1

Query: 348 KQGGKAKPLKQAKVAEKDYDENDLAYLQ 265
           ++GGK KPLKQ K   K+ DE D A+ Q
Sbjct: 4   REGGKKKPLKQPKKQAKEMDEEDKAFKQ 31

>CCD72_HUMAN (Q9Y2S6) Coiled-coil domain-containing protein 72|
          Length = 64

 Score = 34.3 bits (77), Expect = 0.074
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -1

Query: 348 KQGGKAKPLKQAKVAEKDYDENDLAYLQ 265
           ++GGK KPLKQ K   K+ DE D A+ Q
Sbjct: 4   REGGKKKPLKQPKKQAKEMDEEDKAFKQ 31

>Y022_THEAC (Q9HM47) UPF0204 protein Ta0022|
          Length = 256

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 126 LSFSGHYEWAGRLISSHSSSDQI--LPAHPSGQPWPSAPSG 242
           +S SG Y++   ++S HSS+  +  L AHP+G   PSA  G
Sbjct: 52  MSLSGKYDYLV-VLSRHSSAADVKSLTAHPTGNFGPSADLG 91

>PYR1_EMENI (O93937) Protein pyrABCN [Includes: Glutamine-dependent|
           carbamoyl-phosphate (EC 6.3.5.5); Aspartate
           carbamoyltransferase (EC 2.1.3.2)]
          Length = 2275

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 73  SVTTTDSEARHR*VR*IDYHFLGITNGQADSFLPTLLQTRSSQR 204
           ++  T  EA  + +R +D+H LG     A   + T LQT S QR
Sbjct: 853 AIGRTFEEAIQKAIRSVDFHNLGFNETNALMSIKTELQTPSDQR 896

>COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2) (Fragment)
          Length = 1146

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 156 GRLISSHSSSDQILPAHPSGQPWPSAPSGP 245
           G++IS+  SS   LP  P G P P  P+GP
Sbjct: 389 GKVISAEGSSTIALPG-PPGPPGPIGPTGP 417

>CI010_HUMAN (Q9NZB2) Protein C9orf10|
          Length = 1069

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 143 LRMGRQTHFFPLFFRPDPPSAPFWPALA 226
           L   RQ+H  P    P PP+ PF+PA A
Sbjct: 846 LSFSRQSHTLPF---PPPPALPFYPASA 870

>CCRK_RAT (Q4KM34) Cell cycle-related kinase (EC 2.7.11.22)|
          Length = 346

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 195 LPAHPSGQPWPSAPSGP 245
           LPAHPS  P P  P GP
Sbjct: 293 LPAHPSELPIPQRPGGP 309

>CCRK_MOUSE (Q9JHU3) Cell cycle-related kinase (EC 2.7.11.22)|
           (Cyclin-kinase-activating kinase p42) (CDK-activating
           kinase p42) (CAK-kinase p42) (CDK-related protein kinase
           PNQLARE)
          Length = 346

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 195 LPAHPSGQPWPSAPSGP 245
           LPAHPS  P P  P GP
Sbjct: 293 LPAHPSELPIPQRPGGP 309

>LEU1_PYRAE (Q8ZW35) 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
          Length = 364

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 127 NLSIVPICVALHYLWL*QTTFSCVEHYASSQSVAETYGIP 8
           N ++  +  A+HYL   +T     + Y+ SQ V++ +G+P
Sbjct: 214 NAALEEVVAAVHYLLGLRTNIKLEKLYSLSQLVSKLFGVP 253


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,001,690
Number of Sequences: 219361
Number of extensions: 660948
Number of successful extensions: 2581
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2565
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)