>ENV_HV1ZH (P05881) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 856

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 440 WYMCFTVHINCQVLFGVRVIFGVSFIFIRC*QGY---AYEDKCHAQHEHYYPERIE 598
           WY+   + I    L G+R++F V  I  R  QGY   +++   H Q E   PERIE
Sbjct: 680 WYIKIFIMI-VGGLIGLRIVFAVLSIINRVRQGYSPLSFQTLTHHQREPDRPERIE 734

>VHR1_COWPX (P12932) Host range protein 1|
          Length = 669

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
 Frame = +2

Query: 536 GYAYEDKCHAQHEHYYPER---------IEHLILLKVNKSCTNREESPCNLKH 667
           GYAYE+  H+Q++ Y P           I HL     ++SC N E   C + H
Sbjct: 174 GYAYEEY-HSQNDDYQPRNCGTVLHLYIISHLYSESDSRSCVNPEVVKCLINH 225

>YOJL_BACSU (O31852) Hypothetical protein yojL precursor|
          Length = 414

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 26/98 (26%), Positives = 46/98 (46%)
 Frame = -3

Query: 568 LGMTFVFIGISLLAPDENKADTKDDSNSKKDLTIDMNSEAHVPGNCRPRKLPMEETELDD 389
           L  T +++G SL  P+ +K  T   SNS K  T  +     +    +  K  M  +EL  
Sbjct: 57  LKSTVLYVGQSLKVPESSKKSTTSPSNSSKTSTYTVAYGDSLWMIAKNHK--MSVSELKS 114

Query: 388 MDSFSTSVRVKAKRILSRAKSACSMSLGLGEETISASS 275
           ++S S+ +    +++  +  S+ S S G  + + S SS
Sbjct: 115 LNSLSSDLIRPGQKLKIKGTSSSSGSNGSKKNSGSNSS 152

>VA09_VACCV (Q85320) Protein A9|
          Length = 108

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
 Frame = -3

Query: 667 MFQIAWTFFSICTGF-VYFQEYQV------FDTLR-----IIMFVLGMTFVFIGISLLAP 524
           +FQ+A     +C  F +YF E ++      F  +R     I+  VLG+  ++I       
Sbjct: 16  LFQVANGAIDLCRHFFMYFCEQKLRPNSFWFVVVRAIASMIMYLVLGIALLYISEQDDKK 75

Query: 523 DENKADTKDDSNSKKDLTIDMNSEAHVPGNCRPR 422
           + N A+T +DSNS      D  +E+ +  N  P+
Sbjct: 76  NTNNANTNNDSNSNNS-NNDKRNESSINSNSSPK 108

>ETFB_BACSU (P94550) Electron transfer flavoprotein beta-subunit (Beta-ETF)|
           (Electron transfer flavoprotein small subunit) (ETFSS)
          Length = 257

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 445 VPGNCRPRKLPMEETELDDMDSFSTSVRVKAKRI 344
           +PG  + +K P+EE ELDD+D        K K I
Sbjct: 188 LPGIMKAKKKPLEELELDDLDLDEEDAEPKLKTI 221


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,541,183
Number of Sequences: 219361
Number of extensions: 2071801
Number of successful extensions: 4775
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4774
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)