ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal7n20 |
|---|---|
| Clone Library Name | barley_pub |
>RS7_HORVU (Q949H0) 40S ribosomal protein S7| Length = 191 Score = 89.4 bits (220), Expect = 2e-18 Identities = 45/49 (91%), Positives = 45/49 (91%) Frame = -2 Query: 241 RLDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXPVAETA 95 RLDGAKVIKI LDPKERNNTEYKLETFSAVYRRL GKDVV E PVAETA Sbjct: 143 RLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRLCGKDVVFEYPVAETA 191
>RS7_SECCE (Q9XET4) 40S ribosomal protein S7| Length = 192 Score = 83.2 bits (204), Expect = 2e-16 Identities = 40/49 (81%), Positives = 44/49 (89%) Frame = -2 Query: 241 RLDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXPVAETA 95 RLDG+K+IKI LDP ERNNTEYKL+TF+AVYRRL GKDVV E PVAETA Sbjct: 144 RLDGSKIIKIFLDPMERNNTEYKLDTFTAVYRRLCGKDVVYEYPVAETA 192
>RS7_ORYSA (Q8LJU5) 40S ribosomal protein S7| Length = 192 Score = 77.8 bits (190), Expect = 7e-15 Identities = 36/48 (75%), Positives = 42/48 (87%) Frame = -2 Query: 238 LDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXPVAETA 95 LDG K++KI LDPKERNNTEYKL+TFS+VYRRL GKDVV + P+ ETA Sbjct: 145 LDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYPMTETA 192
>RS7_BRAOL (Q9XH45) 40S ribosomal protein S7| Length = 191 Score = 72.0 bits (175), Expect = 4e-13 Identities = 32/47 (68%), Positives = 39/47 (82%) Frame = -2 Query: 241 RLDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXPVAE 101 R+DG K++K+ L+PKERNNTEYKLET VYR+L GKDVV E PVA+ Sbjct: 144 RVDGTKIMKVYLEPKERNNTEYKLETMVGVYRKLTGKDVVFEYPVAD 190
>RS7_AVIMR (Q9ZNS1) 40S ribosomal protein S7| Length = 190 Score = 68.2 bits (165), Expect = 5e-12 Identities = 30/47 (63%), Positives = 39/47 (82%) Frame = -2 Query: 241 RLDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXPVAE 101 RLDG+K++K+ LDPK +N+TE KLETF+ VYR+L GKDVV E P+ E Sbjct: 144 RLDGSKIMKVFLDPKAKNDTENKLETFAGVYRKLSGKDVVFEFPLTE 190
>RS7_XENLA (P02362) 40S ribosomal protein S7 (S8)| Length = 194 Score = 59.7 bits (143), Expect = 2e-09 Identities = 25/44 (56%), Positives = 36/44 (81%) Frame = -2 Query: 241 RLDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXP 110 +LDG+++IK+ LD ++NN E+K+ETFS VY++L GKDVV E P Sbjct: 147 KLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVVFEFP 190
>RS7_NEUCR (O43105) 40S ribosomal protein S7| Length = 202 Score = 57.8 bits (138), Expect = 7e-09 Identities = 24/43 (55%), Positives = 35/43 (81%) Frame = -2 Query: 235 DGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXPV 107 DG+K +K+ LD KER + +Y+L+T+SAVYRRL GK+V+ E P+ Sbjct: 155 DGSKTLKVILDEKERGSVDYRLDTYSAVYRRLTGKNVLFEFPL 197
>RS7_RAT (P62083) 40S ribosomal protein S7 (S8)| Length = 194 Score = 57.0 bits (136), Expect = 1e-08 Identities = 24/44 (54%), Positives = 35/44 (79%) Frame = -2 Query: 241 RLDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXP 110 +LDG+++IK+ LD ++NN E+K+ETFS VY++L GKDV E P Sbjct: 147 KLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190
>RS7_MOUSE (P62082) 40S ribosomal protein S7| Length = 194 Score = 57.0 bits (136), Expect = 1e-08 Identities = 24/44 (54%), Positives = 35/44 (79%) Frame = -2 Query: 241 RLDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXP 110 +LDG+++IK+ LD ++NN E+K+ETFS VY++L GKDV E P Sbjct: 147 KLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190
>RS7_HUMAN (P62081) 40S ribosomal protein S7| Length = 194 Score = 57.0 bits (136), Expect = 1e-08 Identities = 24/44 (54%), Positives = 35/44 (79%) Frame = -2 Query: 241 RLDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXP 110 +LDG+++IK+ LD ++NN E+K+ETFS VY++L GKDV E P Sbjct: 147 KLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190
>RS7_FELCA (Q5RT64) 40S ribosomal protein S7| Length = 194 Score = 57.0 bits (136), Expect = 1e-08 Identities = 24/44 (54%), Positives = 35/44 (79%) Frame = -2 Query: 241 RLDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXP 110 +LDG+++IK+ LD ++NN E+K+ETFS VY++L GKDV E P Sbjct: 147 KLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190
>RS7_FUGRU (P50894) 40S ribosomal protein S7| Length = 194 Score = 56.6 bits (135), Expect = 2e-08 Identities = 23/44 (52%), Positives = 35/44 (79%) Frame = -2 Query: 241 RLDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXP 110 ++D +++IK+ LD ++NN E+K+ETFS VY++L GKDVV E P Sbjct: 147 KMDSSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVVFEFP 190
>RS7_ICTPU (Q90YR7) 40S ribosomal protein S7| Length = 194 Score = 56.2 bits (134), Expect = 2e-08 Identities = 23/44 (52%), Positives = 35/44 (79%) Frame = -2 Query: 241 RLDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXP 110 +LD +++IK+ LD ++NN E+K+ETF+ VY++L GKDVV E P Sbjct: 147 KLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKLTGKDVVFEFP 190
>RS7_BRARE (P62084) 40S ribosomal protein S7| Length = 194 Score = 55.8 bits (133), Expect = 3e-08 Identities = 22/44 (50%), Positives = 35/44 (79%) Frame = -2 Query: 241 RLDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXP 110 +LD +++IK+ LD ++NN E+K+ETF+ VY++L GKDV+ E P Sbjct: 147 KLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKLTGKDVIFEFP 190
>RS7_SCHPO (Q10101) 40S ribosomal protein S7| Length = 195 Score = 52.0 bits (123), Expect = 4e-07 Identities = 23/44 (52%), Positives = 31/44 (70%) Frame = -2 Query: 235 DGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXPVA 104 DG K IK+ LD ++ N +YKL +FS+VY +L GK+V E PVA Sbjct: 147 DGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFPVA 190
>RS7_CULQU (Q9NB21) 40S ribosomal protein S7| Length = 192 Score = 50.1 bits (118), Expect = 2e-06 Identities = 19/44 (43%), Positives = 34/44 (77%) Frame = -2 Query: 241 RLDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXP 110 +LDG+++IK+ LD ++ E+K++TF++VY++L G+DV E P Sbjct: 145 KLDGSQLIKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFP 188
>RS7_ANOGA (P33514) 40S ribosomal protein S7| Length = 192 Score = 50.1 bits (118), Expect = 2e-06 Identities = 19/44 (43%), Positives = 34/44 (77%) Frame = -2 Query: 241 RLDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXP 110 +LDG+++IK+ LD ++ E+K++TF++VY++L G+DV E P Sbjct: 145 KLDGSQLIKVHLDKNQQTTIEHKVDTFASVYKKLTGRDVTFEFP 188
>RS7_DROYA (P62085) 40S ribosomal protein S7| Length = 194 Score = 49.7 bits (117), Expect = 2e-06 Identities = 18/44 (40%), Positives = 34/44 (77%) Frame = -2 Query: 241 RLDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXP 110 +LDG++++K+ LD ++ E+K++TF++VY++L G+DV E P Sbjct: 145 KLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFP 188
>RS7_DROME (Q9VA91) 40S ribosomal protein S7| Length = 194 Score = 49.7 bits (117), Expect = 2e-06 Identities = 18/44 (40%), Positives = 34/44 (77%) Frame = -2 Query: 241 RLDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXP 110 +LDG++++K+ LD ++ E+K++TF++VY++L G+DV E P Sbjct: 145 KLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFP 188
>RS7_CAEEL (Q23312) 40S ribosomal protein S7| Length = 194 Score = 48.5 bits (114), Expect = 5e-06 Identities = 21/44 (47%), Positives = 29/44 (65%) Frame = -2 Query: 241 RLDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXP 110 +LDG KV K+ LD + N +K+ F++VYR+L GKDV E P Sbjct: 147 KLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFP 190
>RS7_SPOFR (Q962S0) 40S ribosomal protein S7| Length = 190 Score = 48.1 bits (113), Expect = 6e-06 Identities = 18/44 (40%), Positives = 33/44 (75%) Frame = -2 Query: 241 RLDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXP 110 +LDG+++IK+ LD ++ E+K++TF +VY++L G++V E P Sbjct: 143 KLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 186
>RS7_MANSE (P48155) 40S ribosomal protein S7| Length = 190 Score = 48.1 bits (113), Expect = 6e-06 Identities = 18/44 (40%), Positives = 33/44 (75%) Frame = -2 Query: 241 RLDGAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXP 110 +LDG+++IK+ LD ++ E+K++TF +VY++L G++V E P Sbjct: 143 KLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 186
>RS7A_YEAST (P26786) 40S ribosomal protein S7-A (RP30)| Length = 189 Score = 45.8 bits (107), Expect = 3e-05 Identities = 20/41 (48%), Positives = 27/41 (65%) Frame = -2 Query: 232 GAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXP 110 G K+ K+ LD K+ +YKLE+F AVY +L GK +V E P Sbjct: 145 GNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIP 185
>RS7B_YEAST (P48164) 40S ribosomal protein S7-B| Length = 190 Score = 45.8 bits (107), Expect = 3e-05 Identities = 20/41 (48%), Positives = 27/41 (65%) Frame = -2 Query: 232 GAKVIKIXLDPKERNNTEYKLETFSAVYRRLXGKDVVXEXP 110 G K+ K+ LD K+ +YKLE+F AVY +L GK +V E P Sbjct: 146 GNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIP 186 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,927,410 Number of Sequences: 219361 Number of extensions: 420826 Number of successful extensions: 1008 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 996 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1008 length of database: 80,573,946 effective HSP length: 56 effective length of database: 68,289,730 effective search space used: 1638953520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
