ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal31i23 |
|---|---|
| Clone Library Name | barley_pub |
>PDCL3_HUMAN (Q9H2J4) Phosducin-like protein 3 (Viral IAP-associated factor 1)| (VIAF-1) (HTPHLP) Length = 239 Score = 77.8 bits (190), Expect = 2e-14 Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 1/122 (0%) Frame = -1 Query: 578 VVFLYKDAIPXXXXXXXXXXXLATKYAETKFVKIISTDCIPNYPDRNVPTILVYNNSAVK 399 ++ LYK IP LA K+ + KF+K IST CIPNYPDRN+PTI VY +K Sbjct: 116 ILHLYKQGIPLCALINQHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIK 175 Query: 398 GTYVGLQKFGGKKCTPESVALALCHSDPVLNDGQGGGDSSRNNV-MEGVRRKFIEKVVSQ 222 ++G FGG T + + L S ++ D + +V + VRR + K S Sbjct: 176 AQFIGPLVFGGMNLTRDELEWKLSESGAIMTDLEENPKKPIEDVLLSSVRRSVLMKRDSD 235 Query: 221 LE 216 E Sbjct: 236 SE 237
>PDCL3_MOUSE (Q8BVF2) Phosducin-like protein 3 (Viral IAP-associated factor 1)| (VIAF-1) Length = 240 Score = 73.9 bits (180), Expect = 3e-13 Identities = 35/89 (39%), Positives = 48/89 (53%) Frame = -1 Query: 578 VVFLYKDAIPXXXXXXXXXXXLATKYAETKFVKIISTDCIPNYPDRNVPTILVYNNSAVK 399 ++ LYK IP LA K+ + KF+K IST CIPNYPDRN+PT+ VY +K Sbjct: 117 ILHLYKQGIPLCSLINHHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTVFVYREGDIK 176 Query: 398 GTYVGLQKFGGKKCTPESVALALCHSDPV 312 ++G FGG T + + L S + Sbjct: 177 AQFIGPLVFGGMNLTIDELEWKLSESGAI 205
>PDCL3_BRARE (Q6P268) Phosducin-like protein 3 (Viral IAP-associated factor 1| homolog) Length = 239 Score = 73.6 bits (179), Expect = 4e-13 Identities = 37/92 (40%), Positives = 51/92 (55%) Frame = -1 Query: 578 VVFLYKDAIPXXXXXXXXXXXLATKYAETKFVKIISTDCIPNYPDRNVPTILVYNNSAVK 399 V+ LYK IP LA K+ ++KF+K IS+ CIPNYPDRN+PT+ VY + +K Sbjct: 114 VLHLYKQGIPLCSLINQHLAQLARKFPQSKFLKSISSTCIPNYPDRNLPTLFVYRDGEMK 173 Query: 398 GTYVGLQKFGGKKCTPESVALALCHSDPVLND 303 ++G FGG T + + L S V D Sbjct: 174 AQFIGPLVFGGMNLTCDELEWRLSESGAVKTD 205
>VIAF1_DROME (Q8MR62) Viral IAP-associated factor homolog| Length = 240 Score = 69.3 bits (168), Expect = 7e-12 Identities = 37/126 (29%), Positives = 66/126 (52%) Frame = -1 Query: 578 VVFLYKDAIPXXXXXXXXXXXLATKYAETKFVKIISTDCIPNYPDRNVPTILVYNNSAVK 399 V+ LY + +P LA ++ +TKFV+ ++T CIPN+P++N+PTI +Y+ A++ Sbjct: 124 VLHLYANGVPLCALIHHHMQQLAVRFPQTKFVRSVATTCIPNFPEKNLPTIFIYHEGALR 183 Query: 398 GTYVGLQKFGGKKCTPESVALALCHSDPVLNDGQGGGDSSRNNVMEGVRRKFIEKVVSQL 219 Y+G + G K T E + L GQ G + + E R + +K+++ L Sbjct: 184 KQYIGPLELRGDKLTAEELEFML---------GQAG--AVPTEITEDPRPQIRDKMLADL 232 Query: 218 ETREEE 201 E + + Sbjct: 233 EDKSSD 238
>PLP2_YEAST (Q12017) Phosducin-like protein 2 (Viral IAP-associated factor 1| homolog) Length = 286 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/55 (38%), Positives = 29/55 (52%) Frame = -1 Query: 512 ATKYAETKFVKIISTDCIPNYPDRNVPTILVYNNSAVKGTYVGLQKFGGKKCTPE 348 A K+ E KFV+I + I NYP+ N PT++VY V + L + GG E Sbjct: 161 ACKFREIKFVEIPANRAIENYPESNCPTLIVYYRGEVIKNMITLLELGGNNSKME 215
>MDS3_YEAST (P53094) Negative regulator of sporulation MDS3 (MCK1 dosage| suppressor 3) Length = 1487 Score = 33.5 bits (75), Expect = 0.45 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +1 Query: 259 PSMTLLRDESPPPCPSFSTGSEWQSANATDSGVH 360 P T +E PPPCP+ STGS + +N +H Sbjct: 866 PPQTREPNEPPPPCPAMSTGSNTRRSNTLTDYMH 899
>RBN_YERPS (Q66GF5) tRNA-processing ribonuclease BN (EC 3.1.-.-) (RNase BN)| Length = 294 Score = 33.1 bits (74), Expect = 0.59 Identities = 23/79 (29%), Positives = 43/79 (54%) Frame = -2 Query: 490 SLLKLSPRTVFPTTQIGMFLQYWCITTVLSKGLMLVCRSSVGRNAHLNLLHWRFATQTLY 311 S+L + R+ + + F YW + T+ G +LV S V +++L LHW A + Sbjct: 122 SVLNIIWRSKIQRSLVFSFAVYWMVLTL---GPILVGASMV-ISSYLLSLHW-LAHARVD 176 Query: 310 *MMDKVVEIHPVTMSWKAF 254 M+D+++ + P+ +SW +F Sbjct: 177 SMIDEILRVFPLLISWVSF 195
>RBN_YERPE (Q8ZJR1) tRNA-processing ribonuclease BN (EC 3.1.-.-) (RNase BN)| Length = 294 Score = 33.1 bits (74), Expect = 0.59 Identities = 23/79 (29%), Positives = 43/79 (54%) Frame = -2 Query: 490 SLLKLSPRTVFPTTQIGMFLQYWCITTVLSKGLMLVCRSSVGRNAHLNLLHWRFATQTLY 311 S+L + R+ + + F YW + T+ G +LV S V +++L LHW A + Sbjct: 122 SVLNIIWRSKIQRSLVFSFAVYWMVLTL---GPILVGASMV-ISSYLLSLHW-LAHARVD 176 Query: 310 *MMDKVVEIHPVTMSWKAF 254 M+D+++ + P+ +SW +F Sbjct: 177 SMIDEILRVFPLLISWVSF 195
>THIO_BUCAI (P57653) Thioredoxin (TRX)| Length = 108 Score = 30.8 bits (68), Expect = 2.9 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -1 Query: 458 PNYPDRNVPTILVYNNSAVKGTYVG 384 P Y R++PT+L++NNS V T VG Sbjct: 68 PVYSIRSIPTLLLFNNSEVLATKVG 92
>ARAF_PIG (O19004) A-Raf proto-oncogene serine/threonine-protein kinase (EC| 2.7.11.1) (A-Raf-1) Length = 606 Score = 30.0 bits (66), Expect = 5.0 Identities = 19/58 (32%), Positives = 29/58 (50%) Frame = +3 Query: 384 TNISPFDSTVVIHQYCRNIPIWVVGNTVRGDNFNKLGFCIFCRQFLQASLKQPTFWYR 557 T I+P D +I + ++P+ + N VR F L FC FC +FL + T Y+ Sbjct: 76 TAIAPLDGEELIVEVLEDVPL-TMHNFVR-KTFFSLAFCDFCLKFLFHGFRCQTCGYK 131
>ARAF_HUMAN (P10398) A-Raf proto-oncogene serine/threonine-protein kinase (EC| 2.7.11.1) (A-raf-1) (Proto-oncogene Pks) Length = 606 Score = 30.0 bits (66), Expect = 5.0 Identities = 19/58 (32%), Positives = 29/58 (50%) Frame = +3 Query: 384 TNISPFDSTVVIHQYCRNIPIWVVGNTVRGDNFNKLGFCIFCRQFLQASLKQPTFWYR 557 T I+P D +I + ++P+ + N VR F L FC FC +FL + T Y+ Sbjct: 76 TAIAPLDGEELIVEVLEDVPL-TMHNFVR-KTFFSLAFCDFCLKFLFHGFRCQTCGYK 131
>ARAF_RAT (P14056) A-Raf proto-oncogene serine/threonine-protein kinase (EC| 2.7.11.1) Length = 604 Score = 30.0 bits (66), Expect = 5.0 Identities = 19/58 (32%), Positives = 29/58 (50%) Frame = +3 Query: 384 TNISPFDSTVVIHQYCRNIPIWVVGNTVRGDNFNKLGFCIFCRQFLQASLKQPTFWYR 557 T I+P D +I + ++P+ + N VR F L FC FC +FL + T Y+ Sbjct: 76 TAIAPLDGEELIVEVLEDVPL-TMHNFVR-KTFFSLAFCDFCLKFLFHGFRCQTCGYK 131
>ARAF_MOUSE (P04627) A-Raf proto-oncogene serine/threonine-protein kinase (EC| 2.7.11.1) Length = 604 Score = 30.0 bits (66), Expect = 5.0 Identities = 19/58 (32%), Positives = 29/58 (50%) Frame = +3 Query: 384 TNISPFDSTVVIHQYCRNIPIWVVGNTVRGDNFNKLGFCIFCRQFLQASLKQPTFWYR 557 T I+P D +I + ++P+ + N VR F L FC FC +FL + T Y+ Sbjct: 76 TAIAPLDGEELIVEVLEDVPL-TMHNFVR-KTFFSLAFCDFCLKFLFHGFRCQTCGYK 131
>NAS5_CAEEL (P91828) Zinc metalloproteinase nas-5 precursor (EC 3.4.24.21)| (Nematode astacin 5) Length = 360 Score = 29.6 bits (65), Expect = 6.5 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = -1 Query: 497 ETKFVKIISTDCIPNYPDRNVPTILVYNNSAVKGTYVGLQKFGGK 363 +T KI + CI P N P NN +G Y + +F GK Sbjct: 100 KTAMEKIANNTCIRLIPRTNQPDYAEINNKKGQGCYASIGRFPGK 144 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,403,788 Number of Sequences: 219361 Number of extensions: 1852839 Number of successful extensions: 4914 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4741 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4913 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
