ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal31i20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MTF1_HUMAN (Q14872) Metal-regulatory transcription factor 1 (Tra... 34 0.089
2MTF1_MOUSE (Q07243) Metal-regulatory transcription factor 1 (Tra... 34 0.089
3YX0A_CAEEL (Q11116) Hypothetical protein C03B1.10 32 0.34
4AATB2_RHIME (Q06191) Aspartate aminotransferase B (EC 2.6.1.1) (... 30 2.2
5SKIL_PONPY (Q5R431) Ski-like protein (Ski-related protein) 28 4.9
6SKIL_HUMAN (P12757) Ski-like protein (Ski-related protein) (Ski-... 28 4.9
7UNC36_CAEEL (P34374) Voltage-dependent calcium channel unc-36 pr... 28 4.9
8ALLP_BACSU (P94575) Probable allantoin permease (Allantoin trans... 28 6.4
9FLI1_MOUSE (P26323) Friend leukemia integration 1 transcription ... 28 8.4

>MTF1_HUMAN (Q14872) Metal-regulatory transcription factor 1 (Transcription|
           factor MTF-1) (MRE-binding transcription factor)
          Length = 753

 Score = 34.3 bits (77), Expect = 0.089
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 137 GLLQHVVDPSEIHPSIHPSIYPMDRIISGRLL 42
           G +QH++ P +IH +I+P   PM R I G  L
Sbjct: 92  GYVQHIISPDQIHLTINPGSTPMPRNIEGATL 123



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>MTF1_MOUSE (Q07243) Metal-regulatory transcription factor 1 (Transcription|
           factor MTF-1) (MRE-binding transcription factor)
          Length = 675

 Score = 34.3 bits (77), Expect = 0.089
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 137 GLLQHVVDPSEIHPSIHPSIYPMDRIISGRLL 42
           G +QH++ P +IH +I+P   PM R I G  L
Sbjct: 91  GYVQHIISPDQIHLTINPGSTPMPRNIEGATL 122



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>YX0A_CAEEL (Q11116) Hypothetical protein C03B1.10|
          Length = 52

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 75  VDGWMDGWMDFRWIYHMLEKSMGGSPR 155
           +DGWMDGWMD  W+   ++  MGG  R
Sbjct: 21  MDGWMDGWMD-GWMDGWMDGWMGGLGR 46



 Score = 32.3 bits (72), Expect = 0.34
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 70  IG*MDGWMDGWISDGSTTCWRSPW 141
           +G MDGWMDGW+ DG    W   W
Sbjct: 18  LGWMDGWMDGWM-DGWMDGWMDGW 40



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>AATB2_RHIME (Q06191) Aspartate aminotransferase B (EC 2.6.1.1) (Transaminase A)|
           (AspAT)
          Length = 410

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -3

Query: 193 PSSRSYVDLEQLCRGEPPM---DFSNMW*IHLKSIHPSIHPSTRW 68
           P   SY D+ Q+C G+P +   D S+ + +  + +  +I P TRW
Sbjct: 133 PYWTSYSDIVQICEGKPILIACDASSGFRLTAQKLEAAITPRTRW 177



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>SKIL_PONPY (Q5R431) Ski-like protein (Ski-related protein)|
          Length = 684

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 26  SMATTKANGRR*SCPSGRWMDGWMDGFQMDLPHVGEVHGRLAPAQLL 166
           SM + K N  +   PSG  +  W    + +  HV + H  L P+  L
Sbjct: 356 SMRSGKRNQSKTDAPSGMELQSWYPVIKQEGDHVSQTHSFLHPSYYL 402



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>SKIL_HUMAN (P12757) Ski-like protein (Ski-related protein) (Ski-related|
           oncogene)
          Length = 684

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 26  SMATTKANGRR*SCPSGRWMDGWMDGFQMDLPHVGEVHGRLAPAQLL 166
           SM + K N  +   PSG  +  W    + +  HV + H  L P+  L
Sbjct: 356 SMRSGKRNQSKTDAPSGMELQSWYPVIKQEGDHVSQTHSFLHPSYYL 402



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>UNC36_CAEEL (P34374) Voltage-dependent calcium channel unc-36 precursor|
           (Uncoordinated protein 36)
          Length = 1249

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
 Frame = -2

Query: 137 GLLQHVVDPSEIHPSIHPSIYPMDRII------SGRLLWW 36
           G + HV + +++   IH  I  M R++      SG+L WW
Sbjct: 457 GYMVHVANMADVDEKIHHYIRRMSRVVGRHYKESGQLSWW 496



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>ALLP_BACSU (P94575) Probable allantoin permease (Allantoin transport protein)|
          Length = 490

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = -3

Query: 139 MDFSNMW*IHLKSIHPSIHPSTR---WTGSSPAVCFGGSHRWLINLVG 5
           + F   W IHL  +H  +    R   W G    + FGG   W +++ G
Sbjct: 160 LSFVFFWAIHLLVLHHGMESIKRFEVWAGPLVYLVFGGMVWWAVDIAG 207



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>FLI1_MOUSE (P26323) Friend leukemia integration 1 transcription factor|
           (Retroviral integration site protein Fli-1)
          Length = 452

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 150 ASLPWTSPTCGRSI*NPSI--HPSIHLP 73
           AS  WTSPT G    NPS+  HP+ H+P
Sbjct: 419 ASQYWTSPTAG-IYPNPSVPRHPNTHVP 445


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,966,560
Number of Sequences: 219361
Number of extensions: 653910
Number of successful extensions: 1877
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1860
length of database: 80,573,946
effective HSP length: 51
effective length of database: 69,386,535
effective search space used: 1665276840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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