ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal31i04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK100498.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 9e-11
2dbj|AK059282.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 9e-11
3gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.005
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
5gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.005
6gb|AC155301.2| Mus musculus BAC clone RP24-216J21 from chromosom... 42 1.3
7emb|CT010471.11| Mouse DNA sequence from clone RP23-20A5 on chro... 42 1.3
8ref|XM_638037.1| Dictyostelium discoideum hypothetical protein (... 40 5.0
9gb|AC006043.1| Homo sapiens BAC clone RP11-538D15 from 7, comple... 40 5.0
10emb|AL607128.8| Human DNA sequence from clone RP11-444I9 on chro... 40 5.0
11gb|AC114263.2| Dictyostelium discoideum chromosome 2 map 215673-... 40 5.0
12gb|AC010183.6| Homo sapiens 12 BAC RP11-100F15 (Roswell Park Can... 40 5.0

>dbj|AK100498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099E10, full
            insert sequence
          Length = 1623

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 89/106 (83%)
 Strand = Plus / Minus

                                                                        
Query: 264  cccaggtcactcgagatcctgtcgcagagctgtctgtacactgcagtgtcaccatgggac 323
            |||| |||||| |||||||| || ||||||||||| |||| ||||| ||| || | ||||
Sbjct: 1311 cccatgtcactggagatcctctcacagagctgtctatacagtgcagggtctccgttggac 1252

                                                          
Query: 324  ttcctaagctccacaacatgcagagaggggccaagctcaaacacct 369
            |||||||| || |||||||  | ||| |||||||||||||| ||||
Sbjct: 1251 ttcctaagttctacaacatttacagaagggccaagctcaaaaacct 1206



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>dbj|AK059282.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D05, full
            insert sequence
          Length = 1671

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 89/106 (83%)
 Strand = Plus / Minus

                                                                        
Query: 264  cccaggtcactcgagatcctgtcgcagagctgtctgtacactgcagtgtcaccatgggac 323
            |||| |||||| |||||||| || ||||||||||| |||| ||||| ||| || | ||||
Sbjct: 1356 cccatgtcactggagatcctctcacagagctgtctatacagtgcagggtctccgttggac 1297

                                                          
Query: 324  ttcctaagctccacaacatgcagagaggggccaagctcaaacacct 369
            |||||||| || |||||||  | ||| |||||||||||||| ||||
Sbjct: 1296 ttcctaagttctacaacatttacagaagggccaagctcaaaaacct 1251



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>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07,
              complete sequence
          Length = 151399

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                          
Query: 293    ctgtctgtacactgcagtgtcaccatgggacttcctaagctccacaacatgcagagaggg 352
              |||||| |||| ||||| ||| || | |||||||||||| || |||||||  | ||| ||
Sbjct: 146505 ctgtctatacagtgcagggtctccgttggacttcctaagttctacaacatttacagaagg 146564

                               
Query: 353    gccaagctcaaacacct 369
              |||||||||||| ||||
Sbjct: 146565 gccaagctcaaaaacct 146581



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                           
Query: 293     ctgtctgtacactgcagtgtcaccatgggacttcctaagctccacaacatgcagagaggg 352
               |||||| |||| ||||| ||| || | |||||||||||| || |||||||  | ||| ||
Sbjct: 2053636 ctgtctatacagtgcagggtctccgttggacttcctaagttctacaacatttacagaagg 2053695

                                
Query: 353     gccaagctcaaacacct 369
               |||||||||||| ||||
Sbjct: 2053696 gccaagctcaaaaacct 2053712



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>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08,
             complete sequence
          Length = 112268

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                         
Query: 293   ctgtctgtacactgcagtgtcaccatgggacttcctaagctccacaacatgcagagaggg 352
             |||||| |||| ||||| ||| || | |||||||||||| || |||||||  | ||| ||
Sbjct: 20477 ctgtctatacagtgcagggtctccgttggacttcctaagttctacaacatttacagaagg 20536

                              
Query: 353   gccaagctcaaacacct 369
             |||||||||||| ||||
Sbjct: 20537 gccaagctcaaaaacct 20553



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>gb|AC155301.2| Mus musculus BAC clone RP24-216J21 from chromosome 13, complete sequence
          Length = 192299

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 330    agctccacaacatgcagagag 350
              |||||||||||||||||||||
Sbjct: 137093 agctccacaacatgcagagag 137113



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>emb|CT010471.11| Mouse DNA sequence from clone RP23-20A5 on chromosome 13, complete
              sequence
          Length = 219145

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 330    agctccacaacatgcagagag 350
              |||||||||||||||||||||
Sbjct: 103826 agctccacaacatgcagagag 103846



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>ref|XM_638037.1| Dictyostelium discoideum hypothetical protein (DDB0217812), partial
           mRNA
          Length = 1995

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 251 aatcttgtcaattcccaggt 270
           ||||||||||||||||||||
Sbjct: 479 aatcttgtcaattcccaggt 498



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>gb|AC006043.1| Homo sapiens BAC clone RP11-538D15 from 7, complete sequence
          Length = 189036

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    catcccaaaaatcttgtcaa 261
              ||||||||||||||||||||
Sbjct: 123020 catcccaaaaatcttgtcaa 123001



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>emb|AL607128.8| Human DNA sequence from clone RP11-444I9 on chromosome 10 Contains a
             novel gene (FLJ14374), a CDA11 protein (CDA11) pseudogene
             and two novel genes, complete sequence
          Length = 134242

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    gaaatgcataatatctagtt 44
             ||||||||||||||||||||
Sbjct: 87703 gaaatgcataatatctagtt 87684



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>gb|AC114263.2| Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4,
             complete sequence
          Length = 151802

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   aatcttgtcaattcccaggt 270
             ||||||||||||||||||||
Sbjct: 49441 aatcttgtcaattcccaggt 49422



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>gb|AC010183.6| Homo sapiens 12 BAC RP11-100F15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 175504

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 155    cctacagcacagcactcatcacaa 178
              |||||| |||||||||||||||||
Sbjct: 161784 cctacaccacagcactcatcacaa 161807


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,452,078
Number of Sequences: 3902068
Number of extensions: 2452078
Number of successful extensions: 41225
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41200
Number of HSP's gapped (non-prelim): 25
length of query: 372
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 350
effective length of database: 17,147,199,772
effective search space: 6001519920200
effective search space used: 6001519920200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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