| Clone Name | rbaal31i04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK100498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099E10, full insert sequence Length = 1623 Score = 75.8 bits (38), Expect = 9e-11 Identities = 89/106 (83%) Strand = Plus / Minus Query: 264 cccaggtcactcgagatcctgtcgcagagctgtctgtacactgcagtgtcaccatgggac 323 |||| |||||| |||||||| || ||||||||||| |||| ||||| ||| || | |||| Sbjct: 1311 cccatgtcactggagatcctctcacagagctgtctatacagtgcagggtctccgttggac 1252 Query: 324 ttcctaagctccacaacatgcagagaggggccaagctcaaacacct 369 |||||||| || ||||||| | ||| |||||||||||||| |||| Sbjct: 1251 ttcctaagttctacaacatttacagaagggccaagctcaaaaacct 1206
>dbj|AK059282.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D05, full insert sequence Length = 1671 Score = 75.8 bits (38), Expect = 9e-11 Identities = 89/106 (83%) Strand = Plus / Minus Query: 264 cccaggtcactcgagatcctgtcgcagagctgtctgtacactgcagtgtcaccatgggac 323 |||| |||||| |||||||| || ||||||||||| |||| ||||| ||| || | |||| Sbjct: 1356 cccatgtcactggagatcctctcacagagctgtctatacagtgcagggtctccgttggac 1297 Query: 324 ttcctaagctccacaacatgcagagaggggccaagctcaaacacct 369 |||||||| || ||||||| | ||| |||||||||||||| |||| Sbjct: 1296 ttcctaagttctacaacatttacagaagggccaagctcaaaaacct 1251
>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07, complete sequence Length = 151399 Score = 50.1 bits (25), Expect = 0.005 Identities = 64/77 (83%) Strand = Plus / Plus Query: 293 ctgtctgtacactgcagtgtcaccatgggacttcctaagctccacaacatgcagagaggg 352 |||||| |||| ||||| ||| || | |||||||||||| || ||||||| | ||| || Sbjct: 146505 ctgtctatacagtgcagggtctccgttggacttcctaagttctacaacatttacagaagg 146564 Query: 353 gccaagctcaaacacct 369 |||||||||||| |||| Sbjct: 146565 gccaagctcaaaaacct 146581
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 50.1 bits (25), Expect = 0.005 Identities = 64/77 (83%) Strand = Plus / Plus Query: 293 ctgtctgtacactgcagtgtcaccatgggacttcctaagctccacaacatgcagagaggg 352 |||||| |||| ||||| ||| || | |||||||||||| || ||||||| | ||| || Sbjct: 2053636 ctgtctatacagtgcagggtctccgttggacttcctaagttctacaacatttacagaagg 2053695 Query: 353 gccaagctcaaacacct 369 |||||||||||| |||| Sbjct: 2053696 gccaagctcaaaaacct 2053712
>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08, complete sequence Length = 112268 Score = 50.1 bits (25), Expect = 0.005 Identities = 64/77 (83%) Strand = Plus / Plus Query: 293 ctgtctgtacactgcagtgtcaccatgggacttcctaagctccacaacatgcagagaggg 352 |||||| |||| ||||| ||| || | |||||||||||| || ||||||| | ||| || Sbjct: 20477 ctgtctatacagtgcagggtctccgttggacttcctaagttctacaacatttacagaagg 20536 Query: 353 gccaagctcaaacacct 369 |||||||||||| |||| Sbjct: 20537 gccaagctcaaaaacct 20553
>gb|AC155301.2| Mus musculus BAC clone RP24-216J21 from chromosome 13, complete sequence Length = 192299 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 330 agctccacaacatgcagagag 350 ||||||||||||||||||||| Sbjct: 137093 agctccacaacatgcagagag 137113
>emb|CT010471.11| Mouse DNA sequence from clone RP23-20A5 on chromosome 13, complete sequence Length = 219145 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 330 agctccacaacatgcagagag 350 ||||||||||||||||||||| Sbjct: 103826 agctccacaacatgcagagag 103846
>ref|XM_638037.1| Dictyostelium discoideum hypothetical protein (DDB0217812), partial mRNA Length = 1995 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 aatcttgtcaattcccaggt 270 |||||||||||||||||||| Sbjct: 479 aatcttgtcaattcccaggt 498
>gb|AC006043.1| Homo sapiens BAC clone RP11-538D15 from 7, complete sequence Length = 189036 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 catcccaaaaatcttgtcaa 261 |||||||||||||||||||| Sbjct: 123020 catcccaaaaatcttgtcaa 123001
>emb|AL607128.8| Human DNA sequence from clone RP11-444I9 on chromosome 10 Contains a novel gene (FLJ14374), a CDA11 protein (CDA11) pseudogene and two novel genes, complete sequence Length = 134242 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 gaaatgcataatatctagtt 44 |||||||||||||||||||| Sbjct: 87703 gaaatgcataatatctagtt 87684
>gb|AC114263.2| Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence Length = 151802 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 aatcttgtcaattcccaggt 270 |||||||||||||||||||| Sbjct: 49441 aatcttgtcaattcccaggt 49422
>gb|AC010183.6| Homo sapiens 12 BAC RP11-100F15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175504 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 cctacagcacagcactcatcacaa 178 |||||| ||||||||||||||||| Sbjct: 161784 cctacaccacagcactcatcacaa 161807 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,452,078 Number of Sequences: 3902068 Number of extensions: 2452078 Number of successful extensions: 41225 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41200 Number of HSP's gapped (non-prelim): 25 length of query: 372 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 350 effective length of database: 17,147,199,772 effective search space: 6001519920200 effective search space used: 6001519920200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)