ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal31i03 |
|---|---|
| Clone Library Name | barley_pub |
>HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC| stretch-binding protein) (CSBP) Length = 463 Score = 43.9 bits (102), Expect = 2e-04 Identities = 23/58 (39%), Positives = 34/58 (58%) Frame = -1 Query: 404 LXKSVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSLLQGFI 231 L S++G GG + +IR SGA +K+ E GS + I+ I G Q++ AQ LLQ + Sbjct: 398 LAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSV 455
>HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| Length = 463 Score = 43.9 bits (102), Expect = 2e-04 Identities = 23/58 (39%), Positives = 34/58 (58%) Frame = -1 Query: 404 LXKSVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSLLQGFI 231 L S++G GG + +IR SGA +K+ E GS + I+ I G Q++ AQ LLQ + Sbjct: 398 LAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSV 455
>HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K| Length = 463 Score = 43.9 bits (102), Expect = 2e-04 Identities = 23/58 (39%), Positives = 34/58 (58%) Frame = -1 Query: 404 LXKSVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSLLQGFI 231 L S++G GG + +IR SGA +K+ E GS + I+ I G Q++ AQ LLQ + Sbjct: 398 LAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSV 455
>HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| (Transformation up-regulated nuclear protein) (TUNP) Length = 463 Score = 43.9 bits (102), Expect = 2e-04 Identities = 23/58 (39%), Positives = 34/58 (58%) Frame = -1 Query: 404 LXKSVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSLLQGFI 231 L S++G GG + +IR SGA +K+ E GS + I+ I G Q++ AQ LLQ + Sbjct: 398 LAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSV 455
>PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)| Length = 339 Score = 41.2 bits (95), Expect = 0.001 Identities = 20/50 (40%), Positives = 31/50 (62%) Frame = -1 Query: 392 VVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSLL 243 ++G G + EIRQ+SGA++K+ A GSSE + I G + +AQ L+ Sbjct: 276 IIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI 325
>PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)| Length = 339 Score = 41.2 bits (95), Expect = 0.001 Identities = 20/50 (40%), Positives = 31/50 (62%) Frame = -1 Query: 392 VVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSLL 243 ++G G + EIRQ+SGA++K+ A GSSE + I G + +AQ L+ Sbjct: 276 IIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI 325
>PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)| Length = 356 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/50 (40%), Positives = 31/50 (62%) Frame = -1 Query: 392 VVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSLL 243 ++G G N+ EIRQ+SGA++K+ GSS + I G A + +AQ L+ Sbjct: 294 IIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLI 343
>PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)| Length = 356 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/50 (40%), Positives = 31/50 (62%) Frame = -1 Query: 392 VVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSLL 243 ++G G N+ EIRQ+SGA++K+ GSS + I G A + +AQ L+ Sbjct: 294 IIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLI 343
>PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1) (Nucleic| acid-binding protein SUB2.3) Length = 356 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/50 (40%), Positives = 31/50 (62%) Frame = -1 Query: 392 VVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSLL 243 ++G G N+ EIRQ+SGA++K+ GSS + I G A + +AQ L+ Sbjct: 294 IIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLI 343
>PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Putative| heterogeneous nuclear ribonucleoprotein X) (hnRNP X) (CTBP) (CBP) Length = 362 Score = 38.1 bits (87), Expect = 0.008 Identities = 18/50 (36%), Positives = 31/50 (62%) Frame = -1 Query: 392 VVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSLL 243 ++G G + EIRQ+SGA++K+ GS++ + I G A + +AQ L+ Sbjct: 299 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 348
>PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)| Length = 365 Score = 38.1 bits (87), Expect = 0.008 Identities = 18/50 (36%), Positives = 31/50 (62%) Frame = -1 Query: 392 VVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSLL 243 ++G G + EIRQ+SGA++K+ GS++ + I G A + +AQ L+ Sbjct: 302 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 351
>FUBP3_HUMAN (Q96I24) Far upstream element-binding protein 3 (FUSE-binding| protein 3) Length = 572 Score = 36.6 bits (83), Expect = 0.025 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%) Frame = -1 Query: 392 VVGAGGVNLAEIRQISGARMKLLEARPGSSESIME---IQGMAHQVRVAQSLLQGFIG 228 V+G GG N+ I Q SGA ++L P +S+ + I+G+ Q+ VA+ L+ +G Sbjct: 369 VIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQLIDEKVG 426
>PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)| Length = 403 Score = 35.4 bits (80), Expect = 0.055 Identities = 18/50 (36%), Positives = 29/50 (58%) Frame = -1 Query: 392 VVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSLL 243 V+G G ++EIRQ+SGA +K+ G+ E + I G + +AQ L+ Sbjct: 256 VIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLI 305
>PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)| Length = 403 Score = 35.4 bits (80), Expect = 0.055 Identities = 18/50 (36%), Positives = 29/50 (58%) Frame = -1 Query: 392 VVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSLL 243 V+G G ++EIRQ+SGA +K+ G+ E + I G + +AQ L+ Sbjct: 256 VIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLI 305
>NOVA2_HUMAN (Q9UNW9) RNA-binding protein Nova-2 (Neuro-oncological ventral| antigen 2) (Astrocytic NOVA1-like RNA-binding protein) Length = 492 Score = 35.0 bits (79), Expect = 0.072 Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Frame = -1 Query: 395 SVVGAGGVNLAEIRQISGARMKLLEAR---PGSSESIMEIQGMAHQVRVAQSLL 243 S++G GG + ++++ +GA +KL +++ PG++E + +QG A + S + Sbjct: 46 SIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFI 99
>FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUSE-binding| protein 1) (FBP) Length = 651 Score = 34.7 bits (78), Expect = 0.094 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%) Frame = -1 Query: 392 VVGAGGVNLAEIRQISGARMKLLEARPGSSESIME---IQGMAHQVRVAQSLLQGFIG 228 ++G GG + I Q SGAR++L + P +++ M+ I+G Q+ A+ L++ IG Sbjct: 387 IIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIG 444
>FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUSE-binding| protein 1) (FBP) (DNA helicase V) (HDH V) Length = 643 Score = 33.5 bits (75), Expect = 0.21 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%) Frame = -1 Query: 392 VVGAGGVNLAEIRQISGARMKLLEARPGSSESIME---IQGMAHQVRVAQSLLQGFIG 228 ++G GG + I Q SGAR++L P +++ M+ I+G Q+ A+ L++ IG Sbjct: 390 IIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIG 447
>RL15_FRATT (Q5NHU9) 50S ribosomal protein L15| Length = 143 Score = 31.2 bits (69), Expect = 1.0 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +2 Query: 161 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVPYLG 286 G T GKGH+ G ARSG H+ G +PL+ +P G Sbjct: 26 GLGKTSGKGHK--GQKARSGGYHKVGFEGGQMPLQRRLPKFG 65
>RL15_BUCBP (Q89A84) 50S ribosomal protein L15| Length = 147 Score = 30.8 bits (68), Expect = 1.4 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +2 Query: 161 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVPYLG 286 GF T G+GH+ G +RSGC + G +PL +P G Sbjct: 26 GFGKTSGRGHK--GQKSRSGCKIRRGFEGGQMPLYRRIPKFG 65
>RL15_METCA (Q605D1) 50S ribosomal protein L15| Length = 144 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +2 Query: 161 GFSSTLGK--GHEKTGMAARSGC*HQ*SLAEGSVPLELGVPYLG 286 G STLGK G G AR+G H+ G +PL+ +P +G Sbjct: 22 GIGSTLGKTCGRGHKGQKARAGGFHKVGFEGGQMPLQRRLPKVG 65
>IL6RA_HUMAN (P08887) Interleukin-6 receptor alpha chain precursor (IL-6R-alpha)| (IL-6R 1) (Membrane glycoprotein 80) (gp80) (CD126 antigen) Length = 468 Score = 28.9 bits (63), Expect = 5.1 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = -2 Query: 310 VLRNPSWRSKVWHTKFEWHRAFCKASLVLTARA 212 V RNP W S W W+ +F + L RA Sbjct: 227 VARNPRWLSVTWQDPHSWNSSFYRLRFELRYRA 259
>RL15_BORPE (Q7VTB2) 50S ribosomal protein L15| Length = 146 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 161 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVPYLG 286 G T G+GH+ G +RSG H+ G +PL+ +P G Sbjct: 29 GLGKTAGRGHK--GQKSRSGGFHKVGFEGGQMPLQRRLPKRG 68
>RL15_BORPA (Q7W2D6) 50S ribosomal protein L15| Length = 146 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 161 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVPYLG 286 G T G+GH+ G +RSG H+ G +PL+ +P G Sbjct: 29 GLGKTAGRGHK--GQKSRSGGFHKVGFEGGQMPLQRRLPKRG 68
>RL15_BORBR (Q7WRA4) 50S ribosomal protein L15| Length = 146 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 161 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVPYLG 286 G T G+GH+ G +RSG H+ G +PL+ +P G Sbjct: 29 GLGKTAGRGHK--GQKSRSGGFHKVGFEGGQMPLQRRLPKRG 68
>RL15_DECAR (Q47J84) 50S ribosomal protein L15| Length = 144 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 161 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVPYLG 286 G T G+GH+ G +RSG H+ G +PL+ +P G Sbjct: 26 GLGKTCGRGHK--GQKSRSGGFHKVGFEGGQMPLQRRLPKRG 65
>RL15_BURPS (Q63Q30) 50S ribosomal protein L15| Length = 144 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 161 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVPYLG 286 G T G+GH+ G +RSG H+ G +PL+ +P G Sbjct: 26 GLGKTAGRGHK--GQKSRSGGFHKVGFEGGQMPLQRRLPKRG 65
>RL15_BURMA (Q62GM4) 50S ribosomal protein L15| Length = 144 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 161 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVPYLG 286 G T G+GH+ G +RSG H+ G +PL+ +P G Sbjct: 26 GLGKTAGRGHK--GQKSRSGGFHKVGFEGGQMPLQRRLPKRG 65
>TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein| Length = 606 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/59 (25%), Positives = 31/59 (52%) Frame = -1 Query: 398 KSVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSLLQGFIGAN 222 K ++G G N+ ++R+ +GAR+ ++ E ++ I G QV A++ + + N Sbjct: 65 KLIIGRQGANIKQLRKQTGARID-VDTEDVGDERVLLISGFPVQVCKAKAAIHQILTEN 122
>TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein| Length = 560 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/59 (25%), Positives = 31/59 (52%) Frame = -1 Query: 398 KSVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSLLQGFIGAN 222 K ++G G N+ ++R+ +GAR+ ++ E ++ I G QV A++ + + N Sbjct: 65 KLIIGRQGANIKQLRKQTGARID-VDTEDVGDERVLLISGFPVQVCKAKAAIHQILTEN 122
>VIGLN_RAT (Q9Z1A6) Vigilin (High density lipoprotein-binding protein)| (HDL-binding protein) Length = 1268 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = -1 Query: 398 KSVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQS 249 K+++G GG N+ +IR+ S ++ L A +SE+I+ I G A+S Sbjct: 594 KNIIGKGGANIKKIREESNTKID-LPAENSNSETIV-ITGKRANCEAARS 641
>VIGLN_MOUSE (Q8VDJ3) Vigilin (High density lipoprotein-binding protein)| (HDL-binding protein) Length = 1268 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = -1 Query: 398 KSVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQS 249 K+++G GG N+ +IR+ S ++ L A +SE+I+ I G A+S Sbjct: 594 KNIIGKGGANIKKIREESNTKID-LPAENSNSETII-ITGKRANCEAARS 641
>VIGLN_HUMAN (Q00341) Vigilin (High density lipoprotein-binding protein)| (HDL-binding protein) Length = 1268 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = -1 Query: 398 KSVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQS 249 K+++G GG N+ +IR+ S ++ L A +SE+I+ I G A+S Sbjct: 594 KNIIGKGGANIKKIREESNTKID-LPAENSNSETII-ITGKRANCEAARS 641 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,077,550 Number of Sequences: 219361 Number of extensions: 1247137 Number of successful extensions: 2709 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 2647 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2709 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
