Clone Information

BLAST Search Result

Clone Name	rbaal31i03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_197154.1\| Oryza sativa (japonica cultivar-group) putative...	105	1e-19
2	dbj\|AK066573.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	105	1e-19
3	gb\|AC068950.11\| Oryza sativa chromosome 10 BAC OSJNBa0041P03 gen...	68	3e-08
4	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	68	3e-08
5	gb\|AY105228.1\| Zea mays PCO137689 mRNA sequence	68	3e-08
6	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	68	3e-08
7	gb\|AC068923.12\| Oryza sativa chromosome 10 BAC OSJNBa0017E08 gen...	62	2e-06
8	dbj\|AB110443.1\| Oryza sativa (indica cultivar-group) Rf-1 gene f...	62	2e-06
9	ref\|NM_197176.1\| Oryza sativa (japonica cultivar-group) putative...	56	1e-04
10	gb\|AC023240.9\| Oryza sativa chromosome 10 BAC OSJNBa0051D19 geno...	46	0.092
11	dbj\|AK101909.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.092
12	dbj\|AK100638.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.092
13	gb\|AC115484.2\| Drosophila melanogaster clone BACR06K01, complete...	42	1.4
14	gb\|AC124918.5\| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hos...	42	1.4
15	gb\|AC108104.2\| Homo sapiens chromosome 5 clone RP11-198P15, comp...	42	1.4
16	ref\|NM_080191.2\| Drosophila melanogaster weckle CG4148-RA (wek),...	42	1.4
17	gb\|AY051673.1\| Drosophila melanogaster LD22579 full length cDNA	42	1.4
18	gb\|AE003648.2\| Drosophila melanogaster chromosome 2L, section 57...	42	1.4
19	ref\|XM_714593.1\| Candida albicans SC5314 hypothetical protein (C...	40	5.7
20	ref\|XM_714468.1\| Candida albicans SC5314 hypothetical protein (C...	40	5.7
21	ref\|NM_194339.1\| Mus musculus BMS1-like, ribosome assembly prote...	40	5.7
22	gb\|BC030906.1\| Mus musculus BMS1-like, ribosome assembly protein...	40	5.7
23	gb\|AC122847.4\| Mus musculus BAC clone RP23-163F2 from 6, complet...	40	5.7
24	gb\|AY346378.1\| Penaeus monodon crustacean hyperglycemic hormone ...	40	5.7
25	emb\|AL445672.15\| Human DNA sequence from clone RP11-66D1 on chro...	40	5.7
26	emb\|AL356605.20\| Human DNA sequence from clone RP11-414G18 on ch...	40	5.7
27	gb\|AF233295.1\| Penaeus monodon crustacean hyperglycemic hormone ...	40	5.7
28	emb\|BX649410.18\| Mouse DNA sequence from clone RP23-168C6 on chr...	40	5.7
29	emb\|AL928624.4\| Mouse DNA sequence from clone RP23-454E10 on chr...	40	5.7
30	gb\|BC057054.1\| Mus musculus BMS1-like, ribosome assembly protein...	40	5.7
31	dbj\|AK133013.1\| Mus musculus adult male testis cDNA, RIKEN full-...	40	5.7
32	dbj\|AK162178.1\| Mus musculus in vitro fertilized eggs cDNA, RIKE...	40	5.7
33	ref\|NM_076074.3\| Caenorhabditis elegans T14G11.3 (T14G11.3) mRNA...	40	5.7
34	gb\|AC084797.5\| Homo sapiens chromosome 16 clone RP11-62O3, compl...	40	5.7
35	ref\|XM_342746.2\| PREDICTED: Rattus norvegicus BMS1-like, ribosom...	40	5.7
36	gb\|AF216203.1\|AF216203 Limulus polyphemus mitochondrial genome, ...	40	5.7
37	emb\|AL929213.5\| Zebrafish DNA sequence from clone CH211-144A19, ...	40	5.7
38	dbj\|AK129082.1\| Mus musculus mRNA for mKIAA0187 protein	40	5.7
39	gb\|U41024.1\| Caenorhabditis elegans cosmid T14G11, complete sequ...	40	5.7
40	gb\|BC091626.1\| Xenopus laevis cDNA clone IMAGE:7198352, partial cds	40	5.7
41	dbj\|AP000590.7\| Homo sapiens genomic DNA, chromosome 11 clone:CM...	40	5.7
42	gb\|BC092659.1\| Rattus norvegicus BMS1-like, ribosome assembly pr...	40	5.7
43	gb\|AC140192.3\| Mus musculus BAC clone RP24-377O11 from 6, comple...	40	5.7
44	gb\|AC140466.3\| Mus musculus BAC clone RP24-392F9 from 6, complet...	40	5.7
45	gb\|AE017262.2\| Listeria monocytogenes str. 4b F2365, complete ge...	40	5.7

>ref|NM_197154.1| Oryza sativa (japonica cultivar-group) putative RNA-binding protein
            (OSJNBa0041P03.3), mRNA
          Length = 2650

 Score =  105 bits (53), Expect = 1e-19
 Identities = 155/188 (82%), Gaps = 1/188 (0%)
 Strand = Plus / Minus

                                                                        
Query: 232  atgaagccttgcagaaggctctgtgccactcgaacttggtgtgccataccttggatctcc 291
            ||||||||||||||||||||||||||  ||   ||||| |  |  || || |||||||||
Sbjct: 2228 atgaagccttgcagaaggctctgtgcggctttcacttgatccggaatgccctggatctcc 2169

                                                                        
Query: 292  atgatggattccgaagaaccaggacgggcttcaagtaacttcattcttgcaccagatatc 351
            |  ||||| || |||||||| ||| |||||||  | ||||||| ||| || ||||| |||
Sbjct: 2168 acaatggactcggaagaaccgggatgggcttcgtgcaacttcactctcgcgccagagatc 2109

                                                                        
Query: 352  tggcggatctctgctagattgacaccaccagctccaacaacagatttncaaagaactatt 411
            || |||||||| |||||||||||||||||||||||||  ||||| || || | |||||||
Sbjct: 2108 tgacggatctcagctagattgacaccaccagctccaatgacaga-ttccagataactatt 2050

                    
Query: 412  tggaatcc 419
            ||||||||
Sbjct: 2049 tggaatcc 2042

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>dbj|AK066573.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072P14, full
            insert sequence
          Length = 2879

 Score =  105 bits (53), Expect = 1e-19
 Identities = 155/188 (82%), Gaps = 1/188 (0%)
 Strand = Plus / Minus

                                                                        
Query: 232  atgaagccttgcagaaggctctgtgccactcgaacttggtgtgccataccttggatctcc 291
            ||||||||||||||||||||||||||  ||   ||||| |  |  || || |||||||||
Sbjct: 2487 atgaagccttgcagaaggctctgtgcggctttcacttgatccggaatgccctggatctcc 2428

                                                                        
Query: 292  atgatggattccgaagaaccaggacgggcttcaagtaacttcattcttgcaccagatatc 351
            |  ||||| || |||||||| ||| |||||||  | ||||||| ||| || ||||| |||
Sbjct: 2427 acaatggactcggaagaaccgggatgggcttcgtgcaacttcactctcgcgccagagatc 2368

                                                                        
Query: 352  tggcggatctctgctagattgacaccaccagctccaacaacagatttncaaagaactatt 411
            || |||||||| |||||||||||||||||||||||||  ||||| || || | |||||||
Sbjct: 2367 tgacggatctcagctagattgacaccaccagctccaatgacaga-ttccagataactatt 2309

                    
Query: 412  tggaatcc 419
            ||||||||
Sbjct: 2308 tggaatcc 2301

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>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete
             sequence
          Length = 139614

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/65 (89%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                         
Query: 355   cggatctctgctagattgacaccaccagctccaacaacagatttncaaagaactatttgg 414
             |||||||| |||||||||||||||||||||||||  ||||| || || | ||||||||||
Sbjct: 47314 cggatctcagctagattgacaccaccagctccaatgacaga-ttccagataactatttgg 47372

                  
Query: 415   aatcc 419
             |||||
Sbjct: 47373 aatcc 47377



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 232   atgaagccttgcagaaggctctgtgc 257
             ||||||||||||||||||||||||||
Sbjct: 47093 atgaagccttgcagaaggctctgtgc 47118

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/65 (89%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                            
Query: 355      cggatctctgctagattgacaccaccagctccaacaacagatttncaaagaactatttgg 414
                |||||||| |||||||||||||||||||||||||  ||||| || || | ||||||||||
Sbjct: 18303456 cggatctcagctagattgacaccaccagctccaatgacaga-ttccagataactatttgg 18303398

                     
Query: 415      aatcc 419
                |||||
Sbjct: 18303397 aatcc 18303393



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 100/123 (81%)
 Strand = Plus / Minus

                                                                            
Query: 232      atgaagccttgcagaaggctctgtgccactcgaacttggtgtgccataccttggatctcc 291
                ||||||||||||||||||||||||||  ||   ||||| |  |  || || |||||||||
Sbjct: 18442660 atgaagccttgcagaaggctctgtgcggctttcacttgatccggaatgccctggatctcc 18442601

                                                                            
Query: 292      atgatggattccgaagaaccaggacgggcttcaagtaacttcattcttgcaccagatatc 351
                |  ||||| || |||||||||||| |||||||  | ||||||| ||| |||||||| |||
Sbjct: 18442600 acaatggactcggaagaaccaggatgggcttcgtgcaacttcactctcgcaccagagatc 18442541

                   
Query: 352      tgg 354
                |||
Sbjct: 18442540 tgg 18442538



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 232      atgaagccttgcagaaggctctgtgc 257
                ||||||||||||||||||||||||||
Sbjct: 18303677 atgaagccttgcagaaggctctgtgc 18303652



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 355      cggatctctgctagattgacaccacca 381
                |||||||| ||||||||||||||||||
Sbjct: 18442439 cggatctcagctagattgacaccacca 18442413



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 355      cggatctctgctagattgacaccacca 381
                |||||||| ||||||||||||||||||
Sbjct: 18203046 cggatctcagctagattgacaccacca 18203072

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>gb|AY105228.1| Zea mays PCO137689 mRNA sequence
          Length = 1015

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 73/85 (85%), Gaps = 1/85 (1%)
 Strand = Plus / Minus

                                                                       
Query: 336 tcttgcaccagatatctggcggatctctgctagattgacaccaccagctccaacaacaga 395
           |||||||||||| | ||| |||||||||||||||||||| |||||||| || || | |||
Sbjct: 620 tcttgcaccagaaacctgacggatctctgctagattgaccccaccagcaccgacgataga 561

                                    
Query: 396 tttncaaagaactatttggaatcct 420
               |||||||||||||||||||||
Sbjct: 560 -ccccaaagaactatttggaatcct 537

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/65 (89%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                            
Query: 355      cggatctctgctagattgacaccaccagctccaacaacagatttncaaagaactatttgg 414
                |||||||| |||||||||||||||||||||||||  ||||| || || | ||||||||||
Sbjct: 18313109 cggatctcagctagattgacaccaccagctccaatgacaga-ttccagataactatttgg 18313051

                     
Query: 415      aatcc 419
                |||||
Sbjct: 18313050 aatcc 18313046



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 100/123 (81%)
 Strand = Plus / Minus

                                                                            
Query: 232      atgaagccttgcagaaggctctgtgccactcgaacttggtgtgccataccttggatctcc 291
                ||||||||||||||||||||||||||  ||   ||||| |  |  || || |||||||||
Sbjct: 18452713 atgaagccttgcagaaggctctgtgcggctttcacttgatccggaatgccctggatctcc 18452654

                                                                            
Query: 292      atgatggattccgaagaaccaggacgggcttcaagtaacttcattcttgcaccagatatc 351
                |  ||||| || |||||||||||| |||||||  | ||||||| ||| |||||||| |||
Sbjct: 18452653 acaatggactcggaagaaccaggatgggcttcgtgcaacttcactctcgcaccagagatc 18452594

                   
Query: 352      tgg 354
                |||
Sbjct: 18452593 tgg 18452591



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 232      atgaagccttgcagaaggctctgtgc 257
                ||||||||||||||||||||||||||
Sbjct: 18313330 atgaagccttgcagaaggctctgtgc 18313305



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 355      cggatctctgctagattgacaccacca 381
                |||||||| ||||||||||||||||||
Sbjct: 18452492 cggatctcagctagattgacaccacca 18452466



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 355      cggatctctgctagattgacaccacca 381
                |||||||| ||||||||||||||||||
Sbjct: 18212299 cggatctcagctagattgacaccacca 18212325

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>gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E08 genomic sequence, complete
             sequence
          Length = 136120

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 100/123 (81%)
 Strand = Plus / Plus

                                                                         
Query: 232   atgaagccttgcagaaggctctgtgccactcgaacttggtgtgccataccttggatctcc 291
             ||||||||||||||||||||||||||  ||   ||||| |  |  || || |||||||||
Sbjct: 64033 atgaagccttgcagaaggctctgtgcggctttcacttgatccggaatgccctggatctcc 64092

                                                                         
Query: 292   atgatggattccgaagaaccaggacgggcttcaagtaacttcattcttgcaccagatatc 351
             |  ||||| || |||||||||||| |||||||  | ||||||| ||| |||||||| |||
Sbjct: 64093 acaatggactcggaagaaccaggatgggcttcgtgcaacttcactctcgcaccagagatc 64152

                
Query: 352   tgg 354
             |||
Sbjct: 64153 tgg 64155



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 355   cggatctctgctagattgacaccacca 381
             |||||||| ||||||||||||||||||
Sbjct: 64254 cggatctcagctagattgacaccacca 64280

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>dbj|AB110443.1| Oryza sativa (indica cultivar-group) Rf-1 gene for fertility restorer,
             PPR794, PPR683, PPR762 genes for hypothetical protein,
             complete cds
          Length = 76363

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 100/123 (81%)
 Strand = Plus / Minus

                                                                         
Query: 232   atgaagccttgcagaaggctctgtgccactcgaacttggtgtgccataccttggatctcc 291
             ||||||||||||||||||||||||||  ||   ||||| |  |  || || |||||||||
Sbjct: 51399 atgaagccttgcagaaggctctgtgcggctttcacttgatccggaatgccctggatctcc 51340

                                                                         
Query: 292   atgatggattccgaagaaccaggacgggcttcaagtaacttcattcttgcaccagatatc 351
             |  ||||| || |||||||||||| |||||||  | ||||||| ||| |||||||| |||
Sbjct: 51339 acaatggactcggaagaaccaggatgggcttcgtgcaacttcactctcgcaccagagatc 51280

                
Query: 352   tgg 354
             |||
Sbjct: 51279 tgg 51277



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 355   cggatctctgctagattgacaccacca 381
             |||||||| ||||||||||||||||||
Sbjct: 51178 cggatctcagctagattgacaccacca 51152

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>ref|NM_197176.1| Oryza sativa (japonica cultivar-group) putative membrane-associated
            protein (OSJNBa0017E08.17), mRNA
          Length = 2859

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 94/116 (81%)
 Strand = Plus / Minus

                                                                        
Query: 232  atgaagccttgcagaaggctctgtgccactcgaacttggtgtgccataccttggatctcc 291
            ||||||||||||||||||||||||||  ||   ||||| |  |  || || |||||||||
Sbjct: 2798 atgaagccttgcagaaggctctgtgcggctttcacttgatccggaatgccctggatctcc 2739

                                                                    
Query: 292  atgatggattccgaagaaccaggacgggcttcaagtaacttcattcttgcaccaga 347
            |  ||||| || |||||||||||| |||||||  | ||||||| ||| ||||||||
Sbjct: 2738 acaatggactcggaagaaccaggatgggcttcgtgcaacttcactctcgcaccaga 2683

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>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete
             sequence
          Length = 131984

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 355   cggatctctgctagattgacaccacca 381
             |||||||| ||||||||||||||||||
Sbjct: 10082 cggatctcagctagattgacaccacca 10056

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>dbj|AK101909.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071F06, full
            insert sequence
          Length = 3070

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 355  cggatctctgctagattgacaccacca 381
            |||||||| ||||||||||||||||||
Sbjct: 2989 cggatctcagctagattgacaccacca 2963

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>dbj|AK100638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110F04, full
            insert sequence
          Length = 3289

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 355  cggatctctgctagattgacaccacca 381
            |||||||| ||||||||||||||||||
Sbjct: 3133 cggatctcagctagattgacaccacca 3107

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>gb|AC115484.2| Drosophila melanogaster clone BACR06K01, complete sequence
          Length = 168504

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 46    atttttgtcaacaaacatggtctaa 70
             |||||||||||| ||||||||||||
Sbjct: 13623 atttttgtcaaccaacatggtctaa 13647

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>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 228052

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 129    ggtgttatgtagttcttcccc 149
              |||||||||||||||||||||
Sbjct: 173013 ggtgttatgtagttcttcccc 172993

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>gb|AC108104.2| Homo sapiens chromosome 5 clone RP11-198P15, complete sequence
          Length = 96678

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 145   tccccagaagcctctagggtt 165
             |||||||||||||||||||||
Sbjct: 13488 tccccagaagcctctagggtt 13508

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>ref|NM_080191.2| Drosophila melanogaster weckle CG4148-RA (wek), mRNA
          Length = 1659

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 46   atttttgtcaacaaacatggtctaa 70
            |||||||||||| ||||||||||||
Sbjct: 1520 atttttgtcaaccaacatggtctaa 1496

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>gb|AY051673.1| Drosophila melanogaster LD22579 full length cDNA
          Length = 1677

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 46   atttttgtcaacaaacatggtctaa 70
            |||||||||||| ||||||||||||
Sbjct: 1520 atttttgtcaaccaacatggtctaa 1496

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>gb|AE003648.2| Drosophila melanogaster chromosome 2L, section 57 of 83 of the complete
              sequence
          Length = 284900

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 46     atttttgtcaacaaacatggtctaa 70
              |||||||||||| ||||||||||||
Sbjct: 239157 atttttgtcaaccaacatggtctaa 239181

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>ref|XM_714593.1| Candida albicans SC5314 hypothetical protein (CaO19_9663), mRNA
          Length = 1305

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 373 acaccaccagctccaacaac 392
           ||||||||||||||||||||
Sbjct: 248 acaccaccagctccaacaac 229

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>ref|XM_714468.1| Candida albicans SC5314 hypothetical protein (CaO19_2115), mRNA
          Length = 1305

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 373 acaccaccagctccaacaac 392
           ||||||||||||||||||||
Sbjct: 248 acaccaccagctccaacaac 229

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>ref|NM_194339.1| Mus musculus BMS1-like, ribosome assembly protein (yeast) (Bms1l),
            mRNA
          Length = 4305

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  aagccttgcagaaggctctg 254
            ||||||||||||||||||||
Sbjct: 3678 aagccttgcagaaggctctg 3697

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>gb|BC030906.1| Mus musculus BMS1-like, ribosome assembly protein (yeast), mRNA (cDNA
            clone IMAGE:4503618), partial cds
          Length = 3101

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  aagccttgcagaaggctctg 254
            ||||||||||||||||||||
Sbjct: 2478 aagccttgcagaaggctctg 2497

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>gb|AC122847.4| Mus musculus BAC clone RP23-163F2 from 6, complete sequence
          Length = 193343

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   tgcagaaggctctgtgccac 260
             ||||||||||||||||||||
Sbjct: 78845 tgcagaaggctctgtgccac 78826

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>gb|AY346378.1| Penaeus monodon crustacean hyperglycemic hormone 1 precursor (CHH1)
           gene, complete cds
          Length = 907

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 140 gttcttccccagaagcctct 159
           ||||||||||||||||||||
Sbjct: 175 gttcttccccagaagcctct 194

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>emb|AL445672.15| Human DNA sequence from clone RP11-66D1 on chromosome 9, complete
             sequence
          Length = 113031

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     ttagcagtacattccttgga 25
             ||||||||||||||||||||
Sbjct: 26136 ttagcagtacattccttgga 26117

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>emb|AL356605.20| Human DNA sequence from clone RP11-414G18 on chromosome 6 Contains part
             of the TCBA1 gene for T-cell lymphoma breakpoint
             associated target 1, complete sequence
          Length = 169493

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    attatttttgtcaacaaaca 62
             ||||||||||||||||||||
Sbjct: 68459 attatttttgtcaacaaaca 68478

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>gb|AF233295.1| Penaeus monodon crustacean hyperglycemic hormone 1 precursor (CHH1)
           mRNA, complete cds
          Length = 593

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 140 gttcttccccagaagcctct 159
           ||||||||||||||||||||
Sbjct: 175 gttcttccccagaagcctct 194

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>emb|BX649410.18| Mouse DNA sequence from clone RP23-168C6 on chromosome 4 Contains a
             ribosomal protein S6 (Rps6) pseudogene and a novel gene,
             complete sequence
          Length = 231582

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   gttccacactgggtaaaggt 187
             ||||||||||||||||||||
Sbjct: 81134 gttccacactgggtaaaggt 81153

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>emb|AL928624.4| Mouse DNA sequence from clone RP23-454E10 on chromosome 4, complete
            sequence
          Length = 24246

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 241  tgcagaaggctctgtgccac 260
            ||||||||||||||||||||
Sbjct: 2237 tgcagaaggctctgtgccac 2256

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>gb|BC057054.1| Mus musculus BMS1-like, ribosome assembly protein (yeast), mRNA (cDNA
            clone MGC:67338 IMAGE:6827225), complete cds
          Length = 4305

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  aagccttgcagaaggctctg 254
            ||||||||||||||||||||
Sbjct: 3678 aagccttgcagaaggctctg 3697

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>dbj|AK133013.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4930553L04 product:BMS1-like, ribosome
            assembly protein (yeast), full insert sequence
          Length = 3783

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  aagccttgcagaaggctctg 254
            ||||||||||||||||||||
Sbjct: 3628 aagccttgcagaaggctctg 3647

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>dbj|AK162178.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length
            enriched library, clone:7420448D03 product:BMS1-like,
            ribosome assembly protein (yeast), full insert sequence
          Length = 4288

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  aagccttgcagaaggctctg 254
            ||||||||||||||||||||
Sbjct: 3738 aagccttgcagaaggctctg 3757

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>ref|NM_076074.3| Caenorhabditis elegans T14G11.3 (T14G11.3) mRNA, complete cds
          Length = 2362

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 373 acaccaccagctccaacaac 392
           ||||||||||||||||||||
Sbjct: 197 acaccaccagctccaacaac 178

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>gb|AC084797.5| Homo sapiens chromosome 16 clone RP11-62O3, complete sequence
          Length = 163855

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     ttggaaatgaccaaagccca 40
              ||||||||||||||||||||
Sbjct: 103554 ttggaaatgaccaaagccca 103573

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>ref|XM_342746.2| PREDICTED: Rattus norvegicus BMS1-like, ribosome assembly protein
            (yeast) (predicted) (Bms1l_predicted), mRNA
          Length = 4206

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  aagccttgcagaaggctctg 254
            ||||||||||||||||||||
Sbjct: 3596 aagccttgcagaaggctctg 3615

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>gb|AF216203.1|AF216203 Limulus polyphemus mitochondrial genome, complete sequence
          Length = 14985

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 321  ttcaagtaacttcattcttg 340
            ||||||||||||||||||||
Sbjct: 7889 ttcaagtaacttcattcttg 7908

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>emb|AL929213.5| Zebrafish DNA sequence from clone CH211-144A19, complete sequence
          Length = 169897

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    tatttttgtcaacaaacatg 64
             ||||||||||||||||||||
Sbjct: 78890 tatttttgtcaacaaacatg 78909

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>dbj|AK129082.1| Mus musculus mRNA for mKIAA0187 protein
          Length = 4246

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  aagccttgcagaaggctctg 254
            ||||||||||||||||||||
Sbjct: 3638 aagccttgcagaaggctctg 3657

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>gb|U41024.1| Caenorhabditis elegans cosmid T14G11, complete sequence
          Length = 11200

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 373  acaccaccagctccaacaac 392
            ||||||||||||||||||||
Sbjct: 8457 acaccaccagctccaacaac 8476

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>gb|BC091626.1| Xenopus laevis cDNA clone IMAGE:7198352, partial cds
          Length = 3802

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  aagccttgcagaaggctctg 254
            ||||||||||||||||||||
Sbjct: 3632 aagccttgcagaaggctctg 3651

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>dbj|AP000590.7| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-52H4, complete
             sequence
          Length = 114288

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   tgaagccttgcagaaggctc 252
             ||||||||||||||||||||
Sbjct: 79584 tgaagccttgcagaaggctc 79603

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>gb|BC092659.1| Rattus norvegicus BMS1-like, ribosome assembly protein (yeast),
           mRNA (cDNA clone IMAGE:7321247), partial cds
          Length = 1478

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 aagccttgcagaaggctctg 254
           ||||||||||||||||||||
Sbjct: 841 aagccttgcagaaggctctg 860

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>gb|AC140192.3| Mus musculus BAC clone RP24-377O11 from 6, complete sequence
          Length = 160574

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   aagccttgcagaaggctctg 254
             ||||||||||||||||||||
Sbjct: 31771 aagccttgcagaaggctctg 31752

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>gb|AC140466.3| Mus musculus BAC clone RP24-392F9 from 6, complete sequence
          Length = 148392

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 235    aagccttgcagaaggctctg 254
              ||||||||||||||||||||
Sbjct: 107554 aagccttgcagaaggctctg 107535

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>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 136     tgtagttcttccccagaagc 155
               ||||||||||||||||||||
Sbjct: 1361884 tgtagttcttccccagaagc 1361865


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,199,908
Number of Sequences: 3902068
Number of extensions: 3199908
Number of successful extensions: 61057
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60922
Number of HSP's gapped (non-prelim): 130
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result