ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal31g23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
2dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
3dbj|AK103160.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 2e-13
4dbj|AK059755.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 2e-13
5gb|AF145730.1|AF145730 Oryza sativa homeodomain leucine zipper p... 60 9e-06
6gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 48 0.036
7ref|XM_480303.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.55
8gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 44 0.55
9emb|AL157772.10| Human DNA sequence from clone RP11-98F3 on chro... 44 0.55
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
11dbj|AP005606.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
12gb|AY509120.1| Streptomyces bikiniensis strain NRRL 2737 chalcom... 42 2.2
13ref|XM_483223.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.2
14gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 42 2.2
15emb|AL357562.17| Human DNA sequence from clone RP13-16D10 on chr... 42 2.2
16gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 2.2
17gb|AC122427.6| Mus musculus BAC clone RP24-175C2 from chromosome... 42 2.2
18dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
19dbj|AP005051.4| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
20dbj|AB026634.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 2.2
21dbj|AP004190.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
22dbj|AP003883.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
23emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 42 2.2
24gb|AC122474.5| Mus musculus chromosome 1 clone RP24-331M14, comp... 42 2.2
25gb|AY707080.1| Streptomyces turgidiscabies pathogenicity island ... 42 2.2
26gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 8.7
27ref|XM_481150.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.7
28ref|XM_465918.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.7
29ref|XM_465916.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.7
30gb|BC096910.1| Danio rerio zgc:113372, mRNA (cDNA clone MGC:1133... 40 8.7
31gb|AC130598.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.7
32ref|XM_364380.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 8.7
33gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.7
34ref|NM_001030234.1| Danio rerio zgc:113372 (zgc:113372), mRNA 40 8.7
35gb|AY728179.1| Crocidura russula cytomegalovirus 1 DNA polymeras... 40 8.7
36gb|AC122185.4| Mus musculus BAC clone RP23-18J13 from chromosome... 40 8.7
37gb|AC118681.6| Mus musculus chromosome 16, clone RP23-473M11, co... 40 8.7
38ref|XM_790148.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 8.7
39gb|AC115509.5| Rattus norvegicus 2 BAC CH230-382P14 (Children's ... 40 8.7
40emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 40 8.7
41emb|BX640452.1| Bordetella bronchiseptica strain RB50, complete ... 40 8.7
42emb|BX640436.1| Bordetella parapertussis strain 12822, complete ... 40 8.7
43emb|BX640422.1| Bordetella pertussis strain Tohama I, complete g... 40 8.7
44emb|AL662995.2|OSJN00202 Oryza sativa genomic DNA, chromosome 4,... 40 8.7
45emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4,... 40 8.7
46gb|AC104569.7| Homo sapiens chromosome 15, clone RP11-147D1, com... 40 8.7
47gb|AC100835.2| Homo sapiens chromosome 15, clone CTD-3154N5, com... 40 8.7
48gb|AC010198.8| Homo sapiens 12p11-37.2-54.4 BAC RP11-77I22 (Rosw... 40 8.7
49gb|AC093479.13| Mus musculus chromosome 16, clone RP23-61K2, com... 40 8.7
50gb|AC099485.2| Homo sapiens chromosome 5 clone CTD-2008M24, comp... 40 8.7
51dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
52dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
53dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
54dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
55dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
56gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 8.7
57dbj|AP004362.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
58gb|AC135999.4| Homo sapiens chromosome 15, clone RP13-911E13, co... 40 8.7
59dbj|AP004650.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
60dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
61dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
62gb|AY655709.1| Rubrivivax gelatinosus cytochrome bd-type quinol ... 40 8.7
63gb|U43626.1|HSU43626 Human chromosome 15q11-q13 putative DNA rep... 40 8.7
64gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.7
65emb|AL831796.5|CNS08CA9 Oryza sativa chromosome 12, . BAC OSJNBa... 40 8.7
66gb|AC140934.1| Gallus gallus BAC clone TAM31-90J8 from chromosom... 40 8.7
67emb|AL672195.9| Mouse DNA sequence from clone RP23-468E16 on chr... 40 8.7 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 63/69 (91%), Gaps = 3/69 (4%)
 Strand = Plus / Minus

                                                                            
Query: 370      ctcgaattcccaccattgggagctgctgcaggtctgctccgtcgcggacgacggccagct 429
                |||||||||||||||| | | |||||||||||||||||||||   |||||||||||||||
Sbjct: 20371506 ctcgaattcccaccatggcgtgctgctgcaggtctgctccgt---ggacgacggccagct 20371450

                         
Query: 430      cgagtggaa 438
                |||||||||
Sbjct: 20371449 cgagtggaa 20371441



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 527      ggccggaggaagaggcccgcgtcg 550
                |||||||||||||| |||||||||
Sbjct: 20371355 ggccggaggaagagccccgcgtcg 20371332
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>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1439_F07
          Length = 153743

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 63/69 (91%), Gaps = 3/69 (4%)
 Strand = Plus / Minus

                                                                          
Query: 370    ctcgaattcccaccattgggagctgctgcaggtctgctccgtcgcggacgacggccagct 429
              |||||||||||||||| | | |||||||||||||||||||||   |||||||||||||||
Sbjct: 150633 ctcgaattcccaccatggcgtgctgctgcaggtctgctccgt---ggacgacggccagct 150577

                       
Query: 430    cgagtggaa 438
              |||||||||
Sbjct: 150576 cgagtggaa 150568



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 527    ggccggaggaagaggcccgcgtcg 550
              |||||||||||||| |||||||||
Sbjct: 150482 ggccggaggaagagccccgcgtcg 150459
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>dbj|AK103160.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121C04, full
           insert sequence
          Length = 1182

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 63/69 (91%), Gaps = 3/69 (4%)
 Strand = Plus / Minus

                                                                       
Query: 370 ctcgaattcccaccattgggagctgctgcaggtctgctccgtcgcggacgacggccagct 429
           |||||||||||||||| | | |||||||||||||||||||||   |||||||||||||||
Sbjct: 814 ctcgaattcccaccatggcgtgctgctgcaggtctgctccgt---ggacgacggccagct 758

                    
Query: 430 cgagtggaa 438
           |||||||||
Sbjct: 757 cgagtggaa 749



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 527 ggccggaggaagaggcccgcgtcg 550
           |||||||||||||| |||||||||
Sbjct: 663 ggccggaggaagagccccgcgtcg 640
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>dbj|AK059755.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C03, full
           insert sequence
          Length = 1151

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 63/69 (91%), Gaps = 3/69 (4%)
 Strand = Plus / Minus

                                                                       
Query: 370 ctcgaattcccaccattgggagctgctgcaggtctgctccgtcgcggacgacggccagct 429
           |||||||||||||||| | | |||||||||||||||||||||   |||||||||||||||
Sbjct: 770 ctcgaattcccaccatggcgtgctgctgcaggtctgctccgt---ggacgacggccagct 714

                    
Query: 430 cgagtggaa 438
           |||||||||
Sbjct: 713 cgagtggaa 705



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 527 ggccggaggaagaggcccgcgtcg 550
           |||||||||||||| |||||||||
Sbjct: 619 ggccggaggaagagccccgcgtcg 596
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>gb|AF145730.1|AF145730 Oryza sativa homeodomain leucine zipper protein (Oshox6) mRNA,
           partial cds
          Length = 1057

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                     
Query: 370 ctcgaattcccaccattgggagctgctgcaggtctgctccgt 411
           |||||||||||||||| | | |||||||||||||||||||||
Sbjct: 632 ctcgaattcccaccatggcgtgctgctgcaggtctgctccgt 591
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 580    gccgctgccgccgcagccctcggc 603
              ||||||||||||||||||||||||
Sbjct: 608641 gccgctgccgccgcagccctcggc 608618
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>ref|XM_480303.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 363

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 444 acgacgacggcgactgctgctg 465
           ||||||||||||||||||||||
Sbjct: 64  acgacgacggcgactgctgctg 43
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 412    cgcggacgacggccagctcgag 433
              ||||||||||||||||||||||
Sbjct: 288984 cgcggacgacggccagctcgag 288963
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>emb|AL157772.10| Human DNA sequence from clone RP11-98F3 on chromosome 13q14.3-21.31,
             complete sequence
          Length = 121949

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 61    aattgacaagagcaagtgattcttaa 86
             |||||||||||| |||||||||||||
Sbjct: 95850 aattgacaagagaaagtgattcttaa 95875
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 444     acgacgacggcgactgctgctg 465
               ||||||||||||||||||||||
Sbjct: 4214004 acgacgacggcgactgctgctg 4214025



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 444      acgacgacggcgactgctgct 464
                |||||||||||||||||||||
Sbjct: 24898648 acgacgacggcgactgctgct 24898668



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 484      cgccgtgaagccgccgtcgt 503
                ||||||||||||||||||||
Sbjct: 10218549 cgccgtgaagccgccgtcgt 10218568
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>dbj|AP005606.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1590_E05
          Length = 148205

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 444    acgacgacggcgactgctgctg 465
              ||||||||||||||||||||||
Sbjct: 113627 acgacgacggcgactgctgctg 113648
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>gb|AY509120.1| Streptomyces bikiniensis strain NRRL 2737 chalcomycin biosynthetic gene
             cluster, partial sequence
          Length = 85915

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 471   cggccggccccgacgccgtga 491
             |||||||||||||||||||||
Sbjct: 40693 cggccggccccgacgccgtga 40713
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>ref|XM_483223.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1317

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 444 acgacgacggcgactgctgct 464
           |||||||||||||||||||||
Sbjct: 359 acgacgacggcgactgctgct 379
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 327     ttgcatggtgcttgaccgatg 347
               |||||||||||||||||||||
Sbjct: 1102328 ttgcatggtgcttgaccgatg 1102348
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>emb|AL357562.17| Human DNA sequence from clone RP13-16D10 on chromosome Xq11.1-12,
             complete sequence
          Length = 128965

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 132   aaggaagaggctgcctggacg 152
             |||||||||||||||||||||
Sbjct: 26707 aaggaagaggctgcctggacg 26687
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>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete
             sequence
          Length = 1632307

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 182   tcgagctatgtacacacttga 202
             |||||||||||||||||||||
Sbjct: 36728 tcgagctatgtacacacttga 36708
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>gb|AC122427.6| Mus musculus BAC clone RP24-175C2 from chromosome 1, complete sequence
          Length = 180773

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 117    tgactgctgattgagaaggaa 137
              |||||||||||||||||||||
Sbjct: 118812 tgactgctgattgagaaggaa 118792
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 483     acgccgtgaagccgccgtcgt 503
               |||||||||||||||||||||
Sbjct: 8794979 acgccgtgaagccgccgtcgt 8794959
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>dbj|AP005051.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0458G06
          Length = 139109

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 483   acgccgtgaagccgccgtcgt 503
             |||||||||||||||||||||
Sbjct: 25079 acgccgtgaagccgccgtcgt 25059
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>dbj|AB026634.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F24B18
          Length = 50524

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 85    aaagaggaagagggtgaagaa 105
             |||||||||||||||||||||
Sbjct: 50168 aaagaggaagagggtgaagaa 50188
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>dbj|AP004190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1506_F01
          Length = 121202

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 444    acgacgacggcgactgctgct 464
              |||||||||||||||||||||
Sbjct: 103094 acgacgacggcgactgctgct 103114
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>dbj|AP003883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
           BAC clone:OJ1134_H03
          Length = 135914

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 444 acgacgacggcgactgctgct 464
           |||||||||||||||||||||
Sbjct: 363 acgacgacggcgactgctgct 383
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 489     tgaagccgccgtcgtgcgcggttgg 513
               ||||||||||||||| |||||||||
Sbjct: 1380510 tgaagccgccgtcgttcgcggttgg 1380486
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>gb|AC122474.5| Mus musculus chromosome 1 clone RP24-331M14, complete sequence
          Length = 176800

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 117    tgactgctgattgagaaggaa 137
              |||||||||||||||||||||
Sbjct: 129846 tgactgctgattgagaaggaa 129866
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>gb|AY707080.1| Streptomyces turgidiscabies pathogenicity island putative
            transposase, hypothetical protein, putative transposase
            (IS1629), and negrogenic protein (nec1) genes, putative
            transposase pseudogene, and putative resolvase/invertase
            gene, complete cds
          Length = 11000

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 410  gtcgcggacgacggccagctcgagt 434
            |||||||||||||||||| ||||||
Sbjct: 8366 gtcgcggacgacggccagatcgagt 8342
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 584     ctgccgccgcagccctcggc 603
               ||||||||||||||||||||
Sbjct: 1008473 ctgccgccgcagccctcggc 1008454
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>ref|XM_481150.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 357

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 484 cgccgtgaagccgccgtcgt 503
           ||||||||||||||||||||
Sbjct: 169 cgccgtgaagccgccgtcgt 188
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>ref|XM_465918.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 516

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 484 cgccgtgaagccgccgtcgt 503
           ||||||||||||||||||||
Sbjct: 122 cgccgtgaagccgccgtcgt 103
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>ref|XM_465916.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 516

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 484 cgccgtgaagccgccgtcgt 503
           ||||||||||||||||||||
Sbjct: 122 cgccgtgaagccgccgtcgt 103
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>gb|BC096910.1| Danio rerio zgc:113372, mRNA (cDNA clone MGC:113372 IMAGE:7158538),
           complete cds
          Length = 1260

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 82  cttaaagaggaagagggtgaagaa 105
           |||||||||||||||| |||||||
Sbjct: 597 cttaaagaggaagaggctgaagaa 620
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>gb|AC130598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0056I11, complete sequence
          Length = 145796

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 434   tggaacgggaacgacgacggcgac 457
             ||||||||||||||||||| ||||
Sbjct: 35796 tggaacgggaacgacgacgacgac 35773
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>ref|XM_364380.1| Magnaporthe grisea 70-15 hypothetical protein (MG09225.4) partial
           mRNA
          Length = 1182

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 228 tcgatcgcgccgtcgtcttc 247
           ||||||||||||||||||||
Sbjct: 821 tcgatcgcgccgtcgtcttc 802
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>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07,
             complete sequence
          Length = 159932

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 546   cgtcgtcatcctcctcgccg 565
             ||||||||||||||||||||
Sbjct: 50189 cgtcgtcatcctcctcgccg 50208
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>ref|NM_001030234.1| Danio rerio zgc:113372 (zgc:113372), mRNA
          Length = 1260

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 82  cttaaagaggaagagggtgaagaa 105
           |||||||||||||||| |||||||
Sbjct: 597 cttaaagaggaagaggctgaagaa 620
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>gb|AY728179.1| Crocidura russula cytomegalovirus 1 DNA polymerase (DPOL) gene,
           partial cds
          Length = 760

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 546 cgtcgtcatcctcctcgccg 565
           ||||||||||||||||||||
Sbjct: 605 cgtcgtcatcctcctcgccg 586
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>gb|AC122185.4| Mus musculus BAC clone RP23-18J13 from chromosome 15, complete sequence
          Length = 202485

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   tgctgactgctgattgagaa 133
             ||||||||||||||||||||
Sbjct: 64979 tgctgactgctgattgagaa 64960
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>gb|AC118681.6| Mus musculus chromosome 16, clone RP23-473M11, complete sequence
          Length = 279112

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   accatcttcggttgcatatg 226
             ||||||||||||||||||||
Sbjct: 21938 accatcttcggttgcatatg 21957
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>ref|XM_790148.1| PREDICTED: Strongylocentrotus purpuratus similar to CG17652-PA
           (LOC590548), mRNA
          Length = 768

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 85  aaagaggaagagggtgaaga 104
           ||||||||||||||||||||
Sbjct: 696 aaagaggaagagggtgaaga 715
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>gb|AC115509.5| Rattus norvegicus 2 BAC CH230-382P14 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 191869

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    aaagaggaagagggtgaaga 104
             ||||||||||||||||||||
Sbjct: 26946 aaagaggaagagggtgaaga 26927
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>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 434     tggaacgggaacgacgacgg 453
               ||||||||||||||||||||
Sbjct: 3405886 tggaacgggaacgacgacgg 3405905
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>emb|BX640452.1| Bordetella bronchiseptica strain RB50, complete genome; segment 16/16
          Length = 123385

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 578    ttgccgctgccgccgcagcc 597
              ||||||||||||||||||||
Sbjct: 115420 ttgccgctgccgccgcagcc 115439
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>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14
          Length = 255260

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 578    ttgccgctgccgccgcagcc 597
              ||||||||||||||||||||
Sbjct: 247295 ttgccgctgccgccgcagcc 247314
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>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12
          Length = 257701

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 578    ttgccgctgccgccgcagcc 597
              ||||||||||||||||||||
Sbjct: 249803 ttgccgctgccgccgcagcc 249822
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>emb|AL662995.2|OSJN00202 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032D24,
             complete sequence
          Length = 132465

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 484   cgccgtgaagccgccgtcgt 503
             ||||||||||||||||||||
Sbjct: 63952 cgccgtgaagccgccgtcgt 63933
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>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05,
             complete sequence
          Length = 185211

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 484   cgccgtgaagccgccgtcgt 503
             ||||||||||||||||||||
Sbjct: 79479 cgccgtgaagccgccgtcgt 79460
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>gb|AC104569.7| Homo sapiens chromosome 15, clone RP11-147D1, complete sequence
          Length = 152001

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     tggttttgtgactagtttcc 35
              ||||||||||||||||||||
Sbjct: 128532 tggttttgtgactagtttcc 128551
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>gb|AC100835.2| Homo sapiens chromosome 15, clone CTD-3154N5, complete sequence
          Length = 165036

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 386   tgggagctgctgcaggtctg 405
             ||||||||||||||||||||
Sbjct: 76669 tgggagctgctgcaggtctg 76650
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>gb|AC010198.8| Homo sapiens 12p11-37.2-54.4 BAC RP11-77I22 (Roswell Park Cancer
             Institute Human BAC Library) complete sequence
          Length = 199070

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 614   tagagcttgctggccccggc 633
             ||||||||||||||||||||
Sbjct: 99106 tagagcttgctggccccggc 99125
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>gb|AC093479.13| Mus musculus chromosome 16, clone RP23-61K2, complete sequence
          Length = 243771

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   accatcttcggttgcatatg 226
             ||||||||||||||||||||
Sbjct: 37692 accatcttcggttgcatatg 37673
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>gb|AC099485.2| Homo sapiens chromosome 5 clone CTD-2008M24, complete sequence
          Length = 114624

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    gaagagggtgaagaaaaatg 110
             ||||||||||||||||||||
Sbjct: 60009 gaagagggtgaagaaaaatg 60028
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 484      cgccgtgaagccgccgtcgt 503
                ||||||||||||||||||||
Sbjct: 12389925 cgccgtgaagccgccgtcgt 12389906



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 484      cgccgtgaagccgccgtcgt 503
                ||||||||||||||||||||
Sbjct: 12254598 cgccgtgaagccgccgtcgt 12254579
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 484      cgccgtgaagccgccgtcgt 503
                ||||||||||||||||||||
Sbjct: 11120193 cgccgtgaagccgccgtcgt 11120212



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 484      cgccgtgaagccgccgtcgt 503
                ||||||||||||||||||||
Sbjct: 11111670 cgccgtgaagccgccgtcgt 11111689
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 546      cgtcgtcatcctcctcgccg 565
                ||||||||||||||||||||
Sbjct: 17520384 cgtcgtcatcctcctcgccg 17520403



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 434     tggaacgggaacgacgacggcgac 457
               ||||||||||||||||||| ||||
Sbjct: 1583636 tggaacgggaacgacgacgacgac 1583613
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 484      cgccgtgaagccgccgtcgt 503
                ||||||||||||||||||||
Sbjct: 22202967 cgccgtgaagccgccgtcgt 22202986



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 484      cgccgtgaagccgccgtcgt 503
                ||||||||||||||||||||
Sbjct: 18306503 cgccgtgaagccgccgtcgt 18306484



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 484      cgccgtgaagccgccgtcgt 503
                ||||||||||||||||||||
Sbjct: 18297944 cgccgtgaagccgccgtcgt 18297925
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 484      cgccgtgaagccgccgtcgt 503
                ||||||||||||||||||||
Sbjct: 19601152 cgccgtgaagccgccgtcgt 19601171
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 464     tggtactcggccggccccgacgcc 487
               ||||||| ||||||||||||||||
Sbjct: 2300029 tggtactgggccggccccgacgcc 2300006
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>dbj|AP004362.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0014E04
          Length = 146710

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 484   cgccgtgaagccgccgtcgt 503
             ||||||||||||||||||||
Sbjct: 69604 cgccgtgaagccgccgtcgt 69623
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>gb|AC135999.4| Homo sapiens chromosome 15, clone RP13-911E13, complete sequence
          Length = 101277

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    tggttttgtgactagtttcc 35
             ||||||||||||||||||||
Sbjct: 70338 tggttttgtgactagtttcc 70319
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>dbj|AP004650.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1540_G08
          Length = 126263

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 484   cgccgtgaagccgccgtcgt 503
             ||||||||||||||||||||
Sbjct: 24572 cgccgtgaagccgccgtcgt 24591
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>dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1342F01
          Length = 153287

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 484   cgccgtgaagccgccgtcgt 503
             ||||||||||||||||||||
Sbjct: 98811 cgccgtgaagccgccgtcgt 98830
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>dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0052M16
          Length = 145423

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 484    cgccgtgaagccgccgtcgt 503
              ||||||||||||||||||||
Sbjct: 107716 cgccgtgaagccgccgtcgt 107697



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 484   cgccgtgaagccgccgtcgt 503
             ||||||||||||||||||||
Sbjct: 99157 cgccgtgaagccgccgtcgt 99138
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>gb|AY655709.1| Rubrivivax gelatinosus cytochrome bd-type quinol oxidase subunit 1
            (qoxA), cytochrome bd-type quinol oxidase subunit 2
            (qoxB), hypothetical protein, and putative
            endoribonuclease genes, complete cds
          Length = 4440

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 470  tcggccggccccgacgccgt 489
            ||||||||||||||||||||
Sbjct: 1983 tcggccggccccgacgccgt 2002
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>gb|U43626.1|HSU43626 Human chromosome 15q11-q13 putative DNA replication origin in the
           g-aminobutyric acid receptor b3 and a5 gene cluster
          Length = 13022

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tggttttgtgactagtttcc 35
           ||||||||||||||||||||
Sbjct: 682 tggttttgtgactagtttcc 701
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 484      cgccgtgaagccgccgtcgt 503
                ||||||||||||||||||||
Sbjct: 11119892 cgccgtgaagccgccgtcgt 11119911



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 484      cgccgtgaagccgccgtcgt 503
                ||||||||||||||||||||
Sbjct: 11111369 cgccgtgaagccgccgtcgt 11111388
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>emb|AL831796.5|CNS08CA9 Oryza sativa chromosome 12, . BAC OSJNBa0012G19 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 157771

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 484   cgccgtgaagccgccgtcgt 503
             ||||||||||||||||||||
Sbjct: 74505 cgccgtgaagccgccgtcgt 74486



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 484   cgccgtgaagccgccgtcgt 503
             ||||||||||||||||||||
Sbjct: 65982 cgccgtgaagccgccgtcgt 65963
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>gb|AC140934.1| Gallus gallus BAC clone TAM31-90J8 from chromosome ul, complete
             sequence
          Length = 97842

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 580   gccgctgccgccgcagccctcggc 603
             |||||||||||||| |||||||||
Sbjct: 37979 gccgctgccgccgctgccctcggc 37956
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>emb|AL672195.9| Mouse DNA sequence from clone RP23-468E16 on chromosome 9, complete
              sequence
          Length = 182503

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 284    aggaacactgatctgttgca 303
              ||||||||||||||||||||
Sbjct: 122963 aggaacactgatctgttgca 122944


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,375,439
Number of Sequences: 3902068
Number of extensions: 5375439
Number of successful extensions: 119843
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118333
Number of HSP's gapped (non-prelim): 1506
length of query: 635
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 612
effective length of database: 17,143,297,704
effective search space: 10491698194848
effective search space used: 10491698194848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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