ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal31g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VE2_HPV22 (P50768) Regulatory protein E2 29 2.6
2XYN3_ASPKA (P33557) Endo-1,4-beta-xylanase 3 precursor (EC 3.2.1... 28 5.8
3XYN1_ASPNG (P55329) Endo-1,4-beta-xylanase I precursor (EC 3.2.1... 28 5.8
4XYN1_ASPAW (P55328) Endo-1,4-beta-xylanase I precursor (EC 3.2.1... 28 5.8
5CDC2B_ARATH (P25859) Cell division control protein 2 homolog B (... 28 5.8
6XYN1_ASPTU (P55331) Endo-1,4-beta-xylanase I precursor (EC 3.2.1... 28 7.5

>VE2_HPV22 (P50768) Regulatory protein E2|
          Length = 436

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +1

Query: 58  IFSRYFSRQITCWRFRTWGSHGHGSQLLATRGCWV*VQETWVGGGSASILRRRKLVSSAH 237
           I  R  +  + C+R+R    H    Q ++T   W     +WVGG +   + R +++ S H
Sbjct: 356 ILLRGAANTLKCYRYRFRKKHAGSFQFIST--TW-----SWVGGHTTDRIGRSRILISFH 408

Query: 238 T 240
           T
Sbjct: 409 T 409



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>XYN3_ASPKA (P33557) Endo-1,4-beta-xylanase 3 precursor (EC 3.2.1.8) (Xylanase|
           3) (1,4-beta-D-xylan xylanohydrolase 3) (Xylanase C)
          Length = 211

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
 Frame = +1

Query: 52  TSIFSRYFS-RQIT--------CWRFRTWGSHGHGSQLLATRGCWV*VQETWVGGGSASI 204
           TS F++YFS R+ T           F  W  HG G+     +   V   E W G GSAS+
Sbjct: 151 TSTFTQYFSVRESTRTSGTVTVANHFNFWAQHGFGNSDFNYQ---VMAVEAWSGAGSASV 207



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>XYN1_ASPNG (P55329) Endo-1,4-beta-xylanase I precursor (EC 3.2.1.8) (Xylanase|
           I) (1,4-beta-D-xylan xylanohydrolase I)
          Length = 211

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
 Frame = +1

Query: 52  TSIFSRYFS-RQIT--------CWRFRTWGSHGHGSQLLATRGCWV*VQETWVGGGSASI 204
           TS F++YFS R+ T           F  W  HG G+     +   V   E W G GSAS+
Sbjct: 151 TSTFTQYFSVRESTRTSGTVTVANHFNFWAQHGFGNSDFNYQ---VMAVEAWSGAGSASV 207



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>XYN1_ASPAW (P55328) Endo-1,4-beta-xylanase I precursor (EC 3.2.1.8) (Xylanase|
           I) (1,4-beta-D-xylan xylanohydrolase I)
          Length = 211

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
 Frame = +1

Query: 52  TSIFSRYFS-RQIT--------CWRFRTWGSHGHGSQLLATRGCWV*VQETWVGGGSASI 204
           TS F++YFS R+ T           F  W  HG G+     +   V   E W G GSAS+
Sbjct: 151 TSTFTQYFSVRESTRTSGTVTVANHFNFWAQHGFGNSDFNYQ---VMAVEAWSGAGSASV 207



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>CDC2B_ARATH (P25859) Cell division control protein 2 homolog B (EC 2.7.11.22)|
           (EC 2.7.11.23)
          Length = 309

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -3

Query: 320 LEHPXFNSLDKSQF 279
           L+HP F+SLDKSQF
Sbjct: 296 LDHPYFDSLDKSQF 309



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>XYN1_ASPTU (P55331) Endo-1,4-beta-xylanase I precursor (EC 3.2.1.8) (Xylanase|
           I) (1,4-beta-D-xylan xylanohydrolase I)
          Length = 211

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
 Frame = +1

Query: 52  TSIFSRYFS-RQIT--------CWRFRTWGSHGHGSQLLATRGCWV*VQETWVGGGSASI 204
           TS F++YFS R+ T           F  W  HG G+     +   V   E W G GSAS+
Sbjct: 151 TSTFTQYFSVRESTRTSGTVTVANHFNFWAHHGFGNSDFNYQ---VVAVEAWSGAGSASV 207


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,977,721
Number of Sequences: 219361
Number of extensions: 588032
Number of successful extensions: 1035
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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