ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal31g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ704455.1| Hordeum vulgare partial eIF(iso)4E gene for puta... 52 4e-04
2gb|AF277239.1|AF277239 Heteranthelium piliferum isolate H5557 di... 52 4e-04
3gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 48 0.006
4gb|AY821733.1| Triticum monococcum beta amylase gene, partial cds 44 0.091
5gb|AY821732.1| Triticum baeoticum beta amylase gene, partial cds 44 0.091
6gb|DQ175899.1| Hordeum vulgare subsp. vulgare clone 28-36A-RB fl... 44 0.091
7emb|X73528.1|TAPHOK T.aestivum gene for phosphoglycerate kinase 44 0.091
8gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 44 0.091
9dbj|AB182944.1| Triticum aestivum Wknox1b gene for KN1 homeobox ... 44 0.091
10gb|AC145915.3| Gallus gallus BAC clone CH261-80C14 from chromoso... 40 1.4
11gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome... 38 5.6
12emb|BX279525.12| Zebrafish DNA sequence from clone CH211-244C18 ... 38 5.6
13gb|AC015994.13| Homo sapiens, clone RP11-328A22, complete sequence 38 5.6
14gb|AC087487.14| Homo sapiens chromosome 15, clone RP11-698F12, c... 38 5.6
15dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.6
16emb|BX005122.10| Zebrafish DNA sequence from clone CH211-134D11,... 38 5.6

>emb|AJ704455.1| Hordeum vulgare partial eIF(iso)4E gene for putative eukaryotic
           translation initiation factor (iso)4E, exons 3-5, line
           OWB-D
          Length = 1412

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 28  ttcatatctagacaaatctangacntgaatttnaggacggagggagt 74
           ||||||||||||||||| || |||  ||||||  |||||||||||||
Sbjct: 517 ttcatatctagacaaatgtaagacaagaattttgggacggagggagt 471



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>gb|AF277239.1|AF277239 Heteranthelium piliferum isolate H5557 disrupted meiotic cDNA 1
            protein (DMC1) gene, partial cds
          Length = 1293

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                           
Query: 28   ttcatatctagacaaatctangacntgaatttnaggacggagggagt 74
            |||||||||| ||||||||| |||| ||||||  |||||||||||||
Sbjct: 1139 ttcatatctaaacaaatctaagacnagaattttgggacggagggagt 1185



 Score = 44.1 bits (22), Expect = 0.091
 Identities = 34/39 (87%)
 Strand = Plus / Minus

                                                   
Query: 36   tagacaaatctangacntgaatttnaggacggagggagt 74
            |||||||||||| |||  ||||||  |||||||||||||
Sbjct: 1099 tagacaaatctatgacaagaattttgggacggagggagt 1061



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>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 30    catatctagacaaatctangacntgaatttnaggacggagggagt 74
             ||||| |||||||||||| |||  ||||||  |||||||||||||
Sbjct: 30502 catatatagacaaatctaagacaagaattttgggacggagggagt 30458



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>gb|AY821733.1| Triticum monococcum beta amylase gene, partial cds
          Length = 1489

 Score = 44.1 bits (22), Expect = 0.091
 Identities = 34/39 (87%)
 Strand = Plus / Plus

                                                  
Query: 36  tagacaaatctangacntgaatttnaggacggagggagt 74
           |||||||||||| |||  ||||||  |||||||||||||
Sbjct: 578 tagacaaatctaagacaagaattttgggacggagggagt 616



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>gb|AY821732.1| Triticum baeoticum beta amylase gene, partial cds
          Length = 1536

 Score = 44.1 bits (22), Expect = 0.091
 Identities = 34/39 (87%)
 Strand = Plus / Plus

                                                  
Query: 36  tagacaaatctangacntgaatttnaggacggagggagt 74
           |||||||||||| |||  ||||||  |||||||||||||
Sbjct: 627 tagacaaatctaagacaagaattttgggacggagggagt 665



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>gb|DQ175899.1| Hordeum vulgare subsp. vulgare clone 28-36A-RB flanking T-DNA
          insertion sequence
          Length = 246

 Score = 44.1 bits (22), Expect = 0.091
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gaaatgaatgtatctaaatact 22
          ||||||||||||||||||||||
Sbjct: 37 gaaatgaatgtatctaaatact 58



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>emb|X73528.1|TAPHOK T.aestivum gene for phosphoglycerate kinase
          Length = 3557

 Score = 44.1 bits (22), Expect = 0.091
 Identities = 37/43 (86%)
 Strand = Plus / Minus

                                                      
Query: 32  tatctagacaaatctangacntgaatttnaggacggagggagt 74
           |||||||||||||||| |||  |||||| | || |||||||||
Sbjct: 228 tatctagacaaatctaagacaagaattttaagatggagggagt 186



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>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score = 44.1 bits (22), Expect = 0.091
 Identities = 40/47 (85%)
 Strand = Plus / Minus

                                                             
Query: 28     ttcatatctagacaaatctangacntgaatttnaggacggagggagt 74
              |||||||||| ||||||||| |||   |||||  |||||||||||||
Sbjct: 222837 ttcatatctaaacaaatctaagacaataattttgggacggagggagt 222791



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>dbj|AB182944.1| Triticum aestivum Wknox1b gene for KN1 homeobox protein, complete cds
          Length = 10847

 Score = 44.1 bits (22), Expect = 0.091
 Identities = 37/43 (86%)
 Strand = Plus / Minus

                                                       
Query: 32   tatctagacaaatctangacntgaatttnaggacggagggagt 74
            |||||||||||||||| |||  ||||||  |||| ||||||||
Sbjct: 7298 tatctagacaaatctaagacaagaattttgggaccgagggagt 7256



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>gb|AC145915.3| Gallus gallus BAC clone CH261-80C14 from chromosome unknown, complete
             sequence
          Length = 196034

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     atgaatgtatctaaatactt 23
             ||||||||||||||||||||
Sbjct: 10566 atgaatgtatctaaatactt 10585



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>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02,
             complete sequence
          Length = 125650

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 26/29 (89%)
 Strand = Plus / Plus

                                          
Query: 62    ggacggagggagtntntgttactggaagc 90
             ||||||||||||| | ||||| |||||||
Sbjct: 93189 ggacggagggagtatgtgttattggaagc 93217



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>emb|BX279525.12| Zebrafish DNA sequence from clone CH211-244C18 in linkage group 12,
             complete sequence
          Length = 173914

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 16    aaatacttgatgttcatatctag 38
             |||||| ||||||||||||||||
Sbjct: 38400 aaatacatgatgttcatatctag 38378



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>gb|AC015994.13| Homo sapiens, clone RP11-328A22, complete sequence
          Length = 163186

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 12    atctaaatacttgatgttc 30
             |||||||||||||||||||
Sbjct: 91030 atctaaatacttgatgttc 91012



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>gb|AC087487.14| Homo sapiens chromosome 15, clone RP11-698F12, complete sequence
          Length = 180232

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 12     atctaaatacttgatgttc 30
              |||||||||||||||||||
Sbjct: 175763 atctaaatacttgatgttc 175781



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 26/29 (89%)
 Strand = Plus / Plus

                                             
Query: 62       ggacggagggagtntntgttactggaagc 90
                ||||||||||||| | ||||| |||||||
Sbjct: 20671149 ggacggagggagtatgtgttattggaagc 20671177



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>emb|BX005122.10| Zebrafish DNA sequence from clone CH211-134D11, complete sequence
          Length = 184142

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 26   tgttcatatctagacaaat 44
            |||||||||||||||||||
Sbjct: 3736 tgttcatatctagacaaat 3754


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 579,558
Number of Sequences: 3902068
Number of extensions: 579558
Number of successful extensions: 48896
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48747
Number of HSP's gapped (non-prelim): 149
length of query: 121
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 100
effective length of database: 17,151,101,840
effective search space: 1715110184000
effective search space used: 1715110184000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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