| Clone Name | rbaal31g02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ704455.1| Hordeum vulgare partial eIF(iso)4E gene for putative eukaryotic translation initiation factor (iso)4E, exons 3-5, line OWB-D Length = 1412 Score = 52.0 bits (26), Expect = 4e-04 Identities = 41/47 (87%) Strand = Plus / Minus Query: 28 ttcatatctagacaaatctangacntgaatttnaggacggagggagt 74 ||||||||||||||||| || ||| |||||| ||||||||||||| Sbjct: 517 ttcatatctagacaaatgtaagacaagaattttgggacggagggagt 471
>gb|AF277239.1|AF277239 Heteranthelium piliferum isolate H5557 disrupted meiotic cDNA 1 protein (DMC1) gene, partial cds Length = 1293 Score = 52.0 bits (26), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 28 ttcatatctagacaaatctangacntgaatttnaggacggagggagt 74 |||||||||| ||||||||| |||| |||||| ||||||||||||| Sbjct: 1139 ttcatatctaaacaaatctaagacnagaattttgggacggagggagt 1185 Score = 44.1 bits (22), Expect = 0.091 Identities = 34/39 (87%) Strand = Plus / Minus Query: 36 tagacaaatctangacntgaatttnaggacggagggagt 74 |||||||||||| ||| |||||| ||||||||||||| Sbjct: 1099 tagacaaatctatgacaagaattttgggacggagggagt 1061
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 48.1 bits (24), Expect = 0.006 Identities = 39/45 (86%) Strand = Plus / Minus Query: 30 catatctagacaaatctangacntgaatttnaggacggagggagt 74 ||||| |||||||||||| ||| |||||| ||||||||||||| Sbjct: 30502 catatatagacaaatctaagacaagaattttgggacggagggagt 30458
>gb|AY821733.1| Triticum monococcum beta amylase gene, partial cds Length = 1489 Score = 44.1 bits (22), Expect = 0.091 Identities = 34/39 (87%) Strand = Plus / Plus Query: 36 tagacaaatctangacntgaatttnaggacggagggagt 74 |||||||||||| ||| |||||| ||||||||||||| Sbjct: 578 tagacaaatctaagacaagaattttgggacggagggagt 616
>gb|AY821732.1| Triticum baeoticum beta amylase gene, partial cds Length = 1536 Score = 44.1 bits (22), Expect = 0.091 Identities = 34/39 (87%) Strand = Plus / Plus Query: 36 tagacaaatctangacntgaatttnaggacggagggagt 74 |||||||||||| ||| |||||| ||||||||||||| Sbjct: 627 tagacaaatctaagacaagaattttgggacggagggagt 665
>gb|DQ175899.1| Hordeum vulgare subsp. vulgare clone 28-36A-RB flanking T-DNA insertion sequence Length = 246 Score = 44.1 bits (22), Expect = 0.091 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1 gaaatgaatgtatctaaatact 22 |||||||||||||||||||||| Sbjct: 37 gaaatgaatgtatctaaatact 58
>emb|X73528.1|TAPHOK T.aestivum gene for phosphoglycerate kinase Length = 3557 Score = 44.1 bits (22), Expect = 0.091 Identities = 37/43 (86%) Strand = Plus / Minus Query: 32 tatctagacaaatctangacntgaatttnaggacggagggagt 74 |||||||||||||||| ||| |||||| | || ||||||||| Sbjct: 228 tatctagacaaatctaagacaagaattttaagatggagggagt 186
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 44.1 bits (22), Expect = 0.091 Identities = 40/47 (85%) Strand = Plus / Minus Query: 28 ttcatatctagacaaatctangacntgaatttnaggacggagggagt 74 |||||||||| ||||||||| ||| ||||| ||||||||||||| Sbjct: 222837 ttcatatctaaacaaatctaagacaataattttgggacggagggagt 222791
>dbj|AB182944.1| Triticum aestivum Wknox1b gene for KN1 homeobox protein, complete cds Length = 10847 Score = 44.1 bits (22), Expect = 0.091 Identities = 37/43 (86%) Strand = Plus / Minus Query: 32 tatctagacaaatctangacntgaatttnaggacggagggagt 74 |||||||||||||||| ||| |||||| |||| |||||||| Sbjct: 7298 tatctagacaaatctaagacaagaattttgggaccgagggagt 7256
>gb|AC145915.3| Gallus gallus BAC clone CH261-80C14 from chromosome unknown, complete sequence Length = 196034 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 atgaatgtatctaaatactt 23 |||||||||||||||||||| Sbjct: 10566 atgaatgtatctaaatactt 10585
>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02, complete sequence Length = 125650 Score = 38.2 bits (19), Expect = 5.6 Identities = 26/29 (89%) Strand = Plus / Plus Query: 62 ggacggagggagtntntgttactggaagc 90 ||||||||||||| | ||||| ||||||| Sbjct: 93189 ggacggagggagtatgtgttattggaagc 93217
>emb|BX279525.12| Zebrafish DNA sequence from clone CH211-244C18 in linkage group 12, complete sequence Length = 173914 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 16 aaatacttgatgttcatatctag 38 |||||| |||||||||||||||| Sbjct: 38400 aaatacatgatgttcatatctag 38378
>gb|AC015994.13| Homo sapiens, clone RP11-328A22, complete sequence Length = 163186 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 atctaaatacttgatgttc 30 ||||||||||||||||||| Sbjct: 91030 atctaaatacttgatgttc 91012
>gb|AC087487.14| Homo sapiens chromosome 15, clone RP11-698F12, complete sequence Length = 180232 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 atctaaatacttgatgttc 30 ||||||||||||||||||| Sbjct: 175763 atctaaatacttgatgttc 175781
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 5.6 Identities = 26/29 (89%) Strand = Plus / Plus Query: 62 ggacggagggagtntntgttactggaagc 90 ||||||||||||| | ||||| ||||||| Sbjct: 20671149 ggacggagggagtatgtgttattggaagc 20671177
>emb|BX005122.10| Zebrafish DNA sequence from clone CH211-134D11, complete sequence Length = 184142 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 26 tgttcatatctagacaaat 44 ||||||||||||||||||| Sbjct: 3736 tgttcatatctagacaaat 3754 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 579,558 Number of Sequences: 3902068 Number of extensions: 579558 Number of successful extensions: 48896 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48747 Number of HSP's gapped (non-prelim): 149 length of query: 121 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 100 effective length of database: 17,151,101,840 effective search space: 1715110184000 effective search space used: 1715110184000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)