ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal30o22 |
|---|---|
| Clone Library Name | barley_pub |
>EF1A2_HORVU (Q40034) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 37.0 bits (84), Expect = 0.013 Identities = 17/18 (94%), Positives = 18/18 (100%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIKSVEKKEPTG Sbjct: 419 QTVAVGVIKSVEKKEPTG 436
>EF1A1_HORVU (P34824) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 37.0 bits (84), Expect = 0.013 Identities = 17/18 (94%), Positives = 18/18 (100%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIKSVEKKEPTG Sbjct: 419 QTVAVGVIKSVEKKEPTG 436
>EF1A_VICFA (O24534) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 35.8 bits (81), Expect = 0.029 Identities = 16/18 (88%), Positives = 18/18 (100%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIKSVEKK+PTG Sbjct: 419 QTVAVGVIKSVEKKDPTG 436
>EF1A_PEA (Q41011) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 35.8 bits (81), Expect = 0.029 Identities = 16/18 (88%), Positives = 18/18 (100%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIKSVEKK+PTG Sbjct: 419 QTVAVGVIKSVEKKDPTG 436
>EF1A_MAIZE (Q41803) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 35.8 bits (81), Expect = 0.029 Identities = 16/18 (88%), Positives = 18/18 (100%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIKSVEKK+PTG Sbjct: 419 QTVAVGVIKSVEKKDPTG 436
>EF1A2_DAUCA (P34823) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 35.8 bits (81), Expect = 0.029 Identities = 16/18 (88%), Positives = 18/18 (100%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIKSVEKK+PTG Sbjct: 419 QTVAVGVIKSVEKKDPTG 436
>EF1A_SOYBN (P25698) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 34.7 bits (78), Expect = 0.065 Identities = 15/18 (83%), Positives = 18/18 (100%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIK+VEKK+PTG Sbjct: 419 QTVAVGVIKNVEKKDPTG 436
>EF1A_ORYSA (O64937) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 34.7 bits (78), Expect = 0.065 Identities = 15/18 (83%), Positives = 18/18 (100%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIK+VEKK+PTG Sbjct: 419 QTVAVGVIKNVEKKDPTG 436
>EF1A_ARATH (P13905) Elongation factor 1-alpha (EF-1-alpha) (eEF-1A)| Length = 449 Score = 34.7 bits (78), Expect = 0.065 Identities = 15/18 (83%), Positives = 18/18 (100%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIKSV+KK+PTG Sbjct: 419 QTVAVGVIKSVDKKDPTG 436
>EF1A1_DAUCA (P29521) Elongation factor 1-alpha (EF-1-alpha)| Length = 449 Score = 34.7 bits (78), Expect = 0.065 Identities = 15/18 (83%), Positives = 18/18 (100%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIK+VEKK+PTG Sbjct: 419 QTVAVGVIKAVEKKDPTG 436
>EF1A_WHEAT (Q03033) Elongation factor 1-alpha (EF-1-alpha)| Length = 447 Score = 34.3 bits (77), Expect = 0.085 Identities = 15/18 (83%), Positives = 17/18 (94%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIK VEKK+PTG Sbjct: 419 QTVAVGVIKGVEKKDPTG 436
>EF1A_MANES (O49169) Elongation factor 1-alpha (EF-1-alpha)| Length = 449 Score = 34.3 bits (77), Expect = 0.085 Identities = 15/18 (83%), Positives = 18/18 (100%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIKSVEKK+P+G Sbjct: 419 QTVAVGVIKSVEKKDPSG 436
>EF1A_TOBAC (P43643) Elongation factor 1-alpha (EF-1-alpha) (Vitronectin-like| adhesion protein 1) (PVN1) Length = 447 Score = 33.5 bits (75), Expect = 0.14 Identities = 14/18 (77%), Positives = 18/18 (100%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIK+V+KK+PTG Sbjct: 419 QTVAVGVIKNVDKKDPTG 436
>EF1A_LYCES (P17786) Elongation factor 1-alpha (EF-1-alpha)| Length = 448 Score = 33.1 bits (74), Expect = 0.19 Identities = 13/18 (72%), Positives = 18/18 (100%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGV+K+V+KK+PTG Sbjct: 419 QTVAVGVVKNVDKKDPTG 436
>EF1A_COCIM (Q96WZ1) Elongation factor 1-alpha (EF-1-alpha)| Length = 460 Score = 32.0 bits (71), Expect = 0.42 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIKSVEK E TG Sbjct: 430 QTVAVGVIKSVEKSEKTG 447
>EF1A_EUGGR (P14963) Elongation factor 1-alpha (EF-1-alpha)| Length = 445 Score = 31.6 bits (70), Expect = 0.55 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIKSV KKE TG Sbjct: 418 QTVAVGVIKSVNKKENTG 435
>EF1C_PORPU (P50256) Elongation factor 1-alpha C (EF-1-alpha)| Length = 449 Score = 31.2 bits (69), Expect = 0.72 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIKSVEKKE G Sbjct: 423 QTVAVGVIKSVEKKEVEG 440
>EF1A_EIMBO (Q07051) Elongation factor 1-alpha (EF-1-alpha) (Fragment)| Length = 346 Score = 29.6 bits (65), Expect = 2.1 Identities = 14/18 (77%), Positives = 15/18 (83%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIK VEKKE G Sbjct: 316 QTVAVGVIKGVEKKEAGG 333
>EF1A_CRYPV (P90519) Elongation factor 1-alpha (EF-1-alpha)| Length = 435 Score = 29.3 bits (64), Expect = 2.7 Identities = 14/17 (82%), Positives = 15/17 (88%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPT 228 +TVAVGVIKSV KKE T Sbjct: 415 QTVAVGVIKSVTKKEAT 431
>EF1A_CANAL (P16017) Elongation factor 1-alpha (EF-1-alpha)| Length = 458 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/18 (72%), Positives = 15/18 (83%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIKSVEK + G Sbjct: 429 QTVAVGVIKSVEKSDKAG 446
>EF1A_YARLI (O59949) Elongation factor 1-alpha (EF-1-alpha)| Length = 460 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/18 (72%), Positives = 15/18 (83%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIKSVEK + G Sbjct: 430 QTVAVGVIKSVEKSDKAG 447
>ATG1_NEUCR (Q7RX99) Serine/threonine-protein kinase atg-1 (EC 2.7.11.1)| (Autophagy-related protein 1) Length = 932 Score = 28.9 bits (63), Expect = 3.6 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = +1 Query: 37 SSPTQPNDTMTRALSSSNTSRHK*PKRLKQLSPPPNTATAT 159 S+PT+P+ + R SSN S +++ +PPPN T T Sbjct: 446 SAPTRPSSYVDRRHRSSNASLR---APVREANPPPNDVTRT 483
>EF1A_PIRIN (Q9HDF6) Elongation factor 1-alpha (EF-1-alpha)| Length = 462 Score = 28.9 bits (63), Expect = 3.6 Identities = 14/18 (77%), Positives = 15/18 (83%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIKSVEK E G Sbjct: 431 QTVAVGVIKSVEKTEGKG 448
>EF1A_ARTSA (P02993) Elongation factor 1-alpha (EF-1-alpha)| Length = 461 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPT 228 +TVAVGVIKSV K+PT Sbjct: 430 QTVAVGVIKSVNFKDPT 446
>AMOT_MOUSE (Q8VHG2) Angiomotin (Fragment)| Length = 926 Score = 28.5 bits (62), Expect = 4.6 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 11/64 (17%) Frame = +1 Query: 40 SPTQPNDTMTRALSSSNTSRHK*P-------KRLKQLSPPPNTATATID----VVKNLTP 186 SP QPND A SSS + + P K ++ PPP + V K+ P Sbjct: 3 SPPQPNDLYKNATSSSEFYKAQGPPPSQHSLKGMEHRGPPPEYPFKGVPSQSVVCKSQEP 62 Query: 187 SHFF 198 HF+ Sbjct: 63 GHFY 66
>CHI3_CANAL (P40954) Chitinase 3 precursor (EC 3.2.1.14)| Length = 567 Score = 28.5 bits (62), Expect = 4.6 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 11/62 (17%) Frame = +1 Query: 37 SSPTQPNDTMTRALSSSNTSRHK*PKRLKQLSPPPNTATAT-----------IDVVKNLT 183 SS T+P + T ALSSS T+ P + ++ P +T T + + +NLT Sbjct: 452 SSSTKPATSTTSALSSSTTTVATIPDDKEIINTPTDTETTSKPPAIITESDATTITQNLT 511 Query: 184 PS 189 PS Sbjct: 512 PS 513
>YEMA_DROME (P25992) Yemanuclein-alpha| Length = 1002 Score = 28.1 bits (61), Expect = 6.1 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = +1 Query: 55 NDTMTRALSSSNTSRHK*PKRLKQLSPPPNTATA-TIDVVKNLTPSHFFLIAALVTLA 225 +DT + +SSN+ + K + KQ S PP A + + LTP F +A T A Sbjct: 689 SDTDSATSASSNSLKRKLKEMPKQTSKPPKKKVAKQVPLQPQLTPHPQFQLAPAATAA 746
>EF1A_BRARE (Q92005) Elongation factor 1-alpha (EF-1-alpha)| Length = 462 Score = 28.1 bits (61), Expect = 6.1 Identities = 13/14 (92%), Positives = 14/14 (100%) Frame = -1 Query: 278 ETVAVGVIKSVEKK 237 +TVAVGVIKSVEKK Sbjct: 431 QTVAVGVIKSVEKK 444
>PCDB3_PANTR (Q5DRD1) Protocadherin beta 3 precursor (PCDH-beta3)| Length = 796 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +1 Query: 70 RALSSSNTSRHK*PKRLKQLSPPPNTATATIDVV 171 R LS + ++HK +K PP +ATAT+ V+ Sbjct: 628 RLLSERDAAKHKLAVLVKDNGEPPRSATATLHVL 661
>PCDBB_PANTR (Q5DRD8) Protocadherin beta 11 precursor (PCDH-beta11)| Length = 797 Score = 27.7 bits (60), Expect = 7.9 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 18/80 (22%) Frame = +1 Query: 70 RALSSSNTSRHK*PKRLKQLSPPPNTATATIDV------------VKNLTPSH----FFL 201 R LS + ++H+ +K PP +ATAT+ V + P+ F Sbjct: 628 RLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPFLPLPEAAPAQAQTDFLT 687 Query: 202 IAALVTLAPVGS--FFSTLL 255 + +V LA V S FFS LL Sbjct: 688 VYLVVALASVSSLFFFSVLL 707
>EF1A_CRYNE (O42671) Elongation factor 1-alpha (EF-1-alpha)| Length = 459 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/18 (72%), Positives = 15/18 (83%) Frame = -1 Query: 278 ETVAVGVIKSVEKKEPTG 225 +TVAVGVIKSV+K E G Sbjct: 429 QTVAVGVIKSVDKTEKGG 446 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,330,964 Number of Sequences: 219361 Number of extensions: 508293 Number of successful extensions: 1755 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 1699 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1754 length of database: 80,573,946 effective HSP length: 68 effective length of database: 65,657,398 effective search space used: 1575777552 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
