ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal31d17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF024589.1| X Tritordeum sp. glycine decarboxylase P subunit ... 222 3e-55
2emb|AJ635205.1| Triticum durum ssp. durum partial mRNA for putat... 180 1e-42
3gb|U11693.1|ASU11693 Avena sativa victorin binding protein mRNA,... 168 4e-39
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 62 7e-07
5dbj|AP003410.4| Oryza sativa (japonica cultivar-group) genomic D... 62 7e-07
6dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic D... 62 7e-07
7dbj|AK111968.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.010
9dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.010
10dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.010
11dbj|AK111934.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.010
12dbj|AK111644.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.010
13gb|AY103920.1| Zea mays PCO082698 mRNA sequence 48 0.010
14emb|Z84572.1|HS49J10 Human DNA sequence from clone RP1-49J10 on ... 44 0.16
15emb|AL354713.7| Human DNA sequence from clone RP11-498A13 on chr... 44 0.16
16emb|AL138820.11| Human DNA sequence from clone RP11-380B4 on chr... 44 0.16
17emb|AL136374.4| Human DNA sequence from clone RP1-244G5 on chrom... 44 0.16
18gb|AC136645.2| Rattus norvegicus 7 BAC CH230-156H17 (Children's ... 42 0.62
19gb|AC132292.3| Mus musculus BAC clone RP24-319L4 from chromosome... 42 0.62
20gb|AC010562.5| Drosophila melanogaster 3L BAC RP98-21K18 (Roswel... 42 0.62
21gb|AC155173.3| Mus musculus BAC clone RP23-72O23 from chromosome... 42 0.62
22gb|AE003560.3| Drosophila melanogaster chromosome 3L, section 25... 42 0.62
23ref|XM_513692.1| PREDICTED: Pan troglodytes similar to D-3-phosp... 40 2.5
24gb|AC134415.8| Mus musculus chromosome 3, clone RP24-224P21, com... 40 2.5
25emb|AL589734.5| Human DNA sequence from clone RP4-683H9 on chrom... 40 2.5
26emb|AL161781.12| Human DNA sequence from clone RP11-297B17 on ch... 40 2.5
27emb|Z77666.1|CEK08E7 Caenorhabditis elegans Cosmid K08E7, comple... 40 2.5
28gb|AC103937.16| Mus musculus chromosome 3, clone RP23-229C5, com... 40 2.5
29ref|XM_516557.1| PREDICTED: Pan troglodytes similar to hypotheti... 38 9.7
30ref|NM_001457.1| Homo sapiens filamin B, beta (actin binding pro... 38 9.7
31gb|AC156992.13| Mus musculus chromosome 7, clone RP23-474C17, co... 38 9.7
32gb|AC125192.3| Mus musculus BAC clone RP23-266B4 from chromosome... 38 9.7
33ref|XM_824433.1| Trypanosoma brucei TREU927 phosphatidylinositol... 38 9.7
34emb|CR974431.11| Pig DNA sequence from clone CH242-511J12 on chr... 38 9.7
35emb|CR848687.8| Zebrafish DNA sequence from clone DKEY-46H11 in ... 38 9.7
36emb|AL512442.10| Human DNA sequence from clone RP11-105A24 on ch... 38 9.7
37emb|AL137066.15| Human DNA sequence from clone RP11-10I9 on chro... 38 9.7
38emb|BX641085.1|HSM806893 Homo sapiens mRNA; cDNA DKFZp686E1669 (... 38 9.7
39emb|AL606464.11| Mouse DNA sequence from clone RP23-462P2 on chr... 38 9.7
40emb|CR749793.1| Homo sapiens mRNA; cDNA DKFZp686A1668 (from clon... 38 9.7
41gb|AC106045.5| Homo sapiens BAC clone RP11-29H20 from 4, complet... 38 9.7
42gb|AC093533.2| Homo sapiens chromosome 5 clone RP11-46C20, compl... 38 9.7
43gb|AC158591.2| Pan troglodytes BAC clone CH251-526G18 from chrom... 38 9.7
44dbj|AB191258.1| Homo sapiens FLNB mRNA for filamin B, complete cds 38 9.7
45gb|AC155842.4| Mus musculus 6 BAC RP24-122N23 (Roswell Park Canc... 38 9.7
46emb|BX890617.13| Zebrafish DNA sequence from clone DKEYP-84F11 i... 38 9.7
47dbj|AP003476.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 38 9.7
48gb|AC161018.4| Pan troglodytes BAC clone CH251-345F11 from chrom... 38 9.7
49gb|AF042166.1|AF042166 Homo sapiens beta-filamin mRNA, complete cds 38 9.7
50gb|AF043045.1|AF043045 Homo sapiens actin-binding protein homolo... 38 9.7
51emb|AL833551.1|HSM804864 Homo sapiens mRNA; cDNA DKFZp686O033 (f... 38 9.7
52emb|CT025608.12| Mouse DNA sequence from clone RP23-292F17 on ch... 38 9.7
53dbj|AB209889.1| Homo sapiens mRNA for filamin B, beta (actin bin... 38 9.7
54emb|AL928593.4| Mouse DNA sequence from clone RP23-100E9 on chro... 38 9.7 
>gb|AF024589.1| X Tritordeum sp. glycine decarboxylase P subunit mRNA, complete cds
          Length = 3487

 Score =  222 bits (112), Expect = 3e-55
 Identities = 158/170 (92%), Gaps = 10/170 (5%)
 Strand = Plus / Minus

                                                                        
Query: 4    tgctagccaatatagtctaatttcactttncaaatgggaatggggaggcag-------cg 56
            ||||||||||||||| ||||||||||||| |||||||||||||||||||||       ||
Sbjct: 3381 tgctagccaatatag-ctaatttcacttt-caaatgggaatggggaggcagtgggggccg 3324

                                                                        
Query: 57   tggggg-tacagaggatacaggagaaggtggcatctgaggagaatatatacagtacatga 115
            |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3323 tggggggtacagaggatacaggagaaggtggcatttgaggagaatatatacagtacatga 3264

                                                              
Query: 116  gggatttagaagcaagcatgcttccctcctacaggaagcatcataacttc 165
            ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3263 gggatttagaagcaagcatgcttccctcctacaggaagcatgataacttc 3214
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>emb|AJ635205.1| Triticum durum ssp. durum partial mRNA for putative glycine
           decarboxylase P subunit (gly1 gene)
          Length = 297

 Score =  180 bits (91), Expect = 1e-42
 Identities = 97/99 (97%)
 Strand = Plus / Minus

                                                                       
Query: 67  gaggatacaggagaaggtggcatctgaggagaatatatacagtacatgagggatttagaa 126
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 296 gaggatacaggagaaggtggcatttgaggagaatatatacagtacatgagggatttagaa 237

                                                  
Query: 127 gcaagcatgcttccctcctacaggaagcatcataacttc 165
           |||||||||||||||||||||||||||||| ||||||||
Sbjct: 236 gcaagcatgcttccctcctacaggaagcatgataacttc 198
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>gb|U11693.1|ASU11693 Avena sativa victorin binding protein mRNA, complete cds
          Length = 3408

 Score =  168 bits (85), Expect = 4e-39
 Identities = 160/179 (89%), Gaps = 6/179 (3%)
 Strand = Plus / Minus

                                                                        
Query: 4    tgctagccaatatagtctaatttcactttncaaatgggaatggggaggcagcg-tggggg 62
            ||||||||||||||| ||||| |||||||  ||||||||||||||| |  ||| | ||| 
Sbjct: 3368 tgctagccaatatag-ctaatatcactttt-aaatgggaatggggaag--gcgataggga 3313

                                                                        
Query: 63   tacagaggatacaggagaaggtggcatctgaggagaatatatacagtacatgagggattt 122
            ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 3312 tacagag-atacaggagagggtggcatctgaggagaatatatacagtacatgagagattg 3254

                                                                       
Query: 123  agaagcaagcatgcttccctcctacaggaagcatcataacttcttgacacagtatcaca 181
            ||||||||||||||||||||||||||||||||||  ||||||||| |||| || |||||
Sbjct: 3253 agaagcaagcatgcttccctcctacaggaagcattgtaacttctttacactgtttcaca 3195
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 130      agcatgcttccctcctacaggaagcatcataacttcttg 168
                ||||||||||||||||||||||||||| || ||||||||
Sbjct: 29559699 agcatgcttccctcctacaggaagcattatgacttcttg 29559661



 Score = 46.1 bits (23), Expect = 0.040
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 72       tacaggagaaggtggcatctgaggaga 98
                ||||||||||||||||| |||||||||
Sbjct: 29559787 tacaggagaaggtggcagctgaggaga 29559761
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>dbj|AP003410.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1142C05
          Length = 151457

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 130   agcatgcttccctcctacaggaagcatcataacttcttg 168
             ||||||||||||||||||||||||||| || ||||||||
Sbjct: 29519 agcatgcttccctcctacaggaagcattatgacttcttg 29481



 Score = 46.1 bits (23), Expect = 0.040
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 72    tacaggagaaggtggcatctgaggaga 98
             ||||||||||||||||| |||||||||
Sbjct: 29607 tacaggagaaggtggcagctgaggaga 29581
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>dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0456F08
          Length = 156850

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                     
Query: 130    agcatgcttccctcctacaggaagcatcataacttcttg 168
              ||||||||||||||||||||||||||| || ||||||||
Sbjct: 125973 agcatgcttccctcctacaggaagcattatgacttcttg 125935



 Score = 46.1 bits (23), Expect = 0.040
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 72     tacaggagaaggtggcatctgaggaga 98
              ||||||||||||||||| |||||||||
Sbjct: 126061 tacaggagaaggtggcagctgaggaga 126035
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>dbj|AK111968.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B09, full
            insert sequence
          Length = 1194

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                   
Query: 130  agcatgcttccctcctacaggaagcatcataacttcttg 168
            ||||||||||||||||||||||||||| || ||||||||
Sbjct: 1051 agcatgcttccctcctacaggaagcattatgacttcttg 1013



 Score = 46.1 bits (23), Expect = 0.040
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 72   tacaggagaaggtggcatctgaggaga 98
            ||||||||||||||||| |||||||||
Sbjct: 1139 tacaggagaaggtggcagctgaggaga 1113
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 133      atgcttccctcctacaggaagcat 156
                ||||||||||||||||||||||||
Sbjct: 24016130 atgcttccctcctacaggaagcat 24016153



 Score = 46.1 bits (23), Expect = 0.040
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 72       tacaggagaaggtggcatctgaggaga 98
                ||||||||||||||||| |||||||||
Sbjct: 24016044 tacaggagaaggtggcagctgaggaga 24016070
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>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0490F09
          Length = 149542

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 133    atgcttccctcctacaggaagcat 156
              ||||||||||||||||||||||||
Sbjct: 145741 atgcttccctcctacaggaagcat 145764



 Score = 46.1 bits (23), Expect = 0.040
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 72     tacaggagaaggtggcatctgaggaga 98
              ||||||||||||||||| |||||||||
Sbjct: 145655 tacaggagaaggtggcagctgaggaga 145681
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>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0429G06
          Length = 158321

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 133   atgcttccctcctacaggaagcat 156
             ||||||||||||||||||||||||
Sbjct: 25823 atgcttccctcctacaggaagcat 25846



 Score = 46.1 bits (23), Expect = 0.040
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 72    tacaggagaaggtggcatctgaggaga 98
             ||||||||||||||||| |||||||||
Sbjct: 25737 tacaggagaaggtggcagctgaggaga 25763
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>dbj|AK111934.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E12, full
           insert sequence
          Length = 823

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 133 atgcttccctcctacaggaagcat 156
           ||||||||||||||||||||||||
Sbjct: 670 atgcttccctcctacaggaagcat 647



 Score = 46.1 bits (23), Expect = 0.040
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 72  tacaggagaaggtggcatctgaggaga 98
           ||||||||||||||||| |||||||||
Sbjct: 756 tacaggagaaggtggcagctgaggaga 730
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>dbj|AK111644.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129F05, full
            insert sequence
          Length = 1836

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 133  atgcttccctcctacaggaagcat 156
            ||||||||||||||||||||||||
Sbjct: 1600 atgcttccctcctacaggaagcat 1577



 Score = 46.1 bits (23), Expect = 0.040
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 72   tacaggagaaggtggcatctgaggaga 98
            ||||||||||||||||| |||||||||
Sbjct: 1686 tacaggagaaggtggcagctgaggaga 1660
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>gb|AY103920.1| Zea mays PCO082698 mRNA sequence
          Length = 2092

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 133  atgcttccctcctacaggaagcat 156
            ||||||||||||||||||||||||
Sbjct: 1845 atgcttccctcctacaggaagcat 1822
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>emb|Z84572.1|HS49J10 Human DNA sequence from clone RP1-49J10 on chromosome 13 Contains the
             3' end of the gene for androgen-induced prostate
             proliferative shutoff associated protein (AS3) (CG008,
             FLJ23236, KIAA0979), complete sequence
          Length = 137246

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 67    gaggatacaggagaaggtggcatctg 92
             ||||| ||||||||||||||||||||
Sbjct: 19260 gaggacacaggagaaggtggcatctg 19235
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>emb|AL354713.7| Human DNA sequence from clone RP11-498A13 on chromosome 1 Contains a
             processed pseudogene for nuclear receptor binding factor 2
             (NRBF2), a processed pseudogene similar to part of
             olfactory receptor, family 11, subfamily H, member 6
             (OR11H6) and the 5' end of the CD53 gene for CD53 antigen,
             complete sequence
          Length = 138370

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 67    gaggatacaggagaaggtggca 88
             ||||||||||||||||||||||
Sbjct: 18625 gaggatacaggagaaggtggca 18604
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>emb|AL138820.11| Human DNA sequence from clone RP11-380B4 on chromosome 13 Contains the
             3' end of the KIAA0979 gene and part of a novel gene,
             complete sequence
          Length = 168487

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 67    gaggatacaggagaaggtggcatctg 92
             ||||| ||||||||||||||||||||
Sbjct: 18746 gaggacacaggagaaggtggcatctg 18721
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>emb|AL136374.4| Human DNA sequence from clone RP1-244G5 on chromosome 1q24.3-25.3,
             complete sequence
          Length = 119853

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 67    gaggatacaggagaaggtggca 88
             ||||||||||||||||||||||
Sbjct: 54567 gaggatacaggagaaggtggca 54546
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>gb|AC136645.2| Rattus norvegicus 7 BAC CH230-156H17 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 204000

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 163    ttcttgacacagtatcacagttcac 187
              |||||||||||||| ||||||||||
Sbjct: 161365 ttcttgacacagtaacacagttcac 161341
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>gb|AC132292.3| Mus musculus BAC clone RP24-319L4 from chromosome 5, complete sequence
          Length = 160517

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 121   ttagaagcaagcatgcttccctcct 145
             ||||||||| |||||||||||||||
Sbjct: 56383 ttagaagcatgcatgcttccctcct 56407
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>gb|AC010562.5| Drosophila melanogaster 3L BAC RP98-21K18 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 181528

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 29    ctttncaaatgggaatggggaggc 52
             |||| |||||||||||||||||||
Sbjct: 45582 cttttcaaatgggaatggggaggc 45559
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>gb|AC155173.3| Mus musculus BAC clone RP23-72O23 from chromosome 5, complete sequence
          Length = 245443

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 121    ttagaagcaagcatgcttccctcct 145
              ||||||||| |||||||||||||||
Sbjct: 125962 ttagaagcatgcatgcttccctcct 125986
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>gb|AE003560.3| Drosophila melanogaster chromosome 3L, section 25 of 83 of the complete
              sequence
          Length = 285494

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 29     ctttncaaatgggaatggggaggc 52
              |||| |||||||||||||||||||
Sbjct: 183147 cttttcaaatgggaatggggaggc 183170
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>ref|XM_513692.1| PREDICTED: Pan troglodytes similar to D-3-phosphoglycerate
            dehydrogenase (3-PGDH) (LOC457168), mRNA
          Length = 3045

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 43   atggggaggcagcgtggggg 62
            ||||||||||||||||||||
Sbjct: 2555 atggggaggcagcgtggggg 2536
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>gb|AC134415.8| Mus musculus chromosome 3, clone RP24-224P21, complete sequence
          Length = 167586

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    agaagcaagcatgcttccct 142
              ||||||||||||||||||||
Sbjct: 146573 agaagcaagcatgcttccct 146554
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>emb|AL589734.5| Human DNA sequence from clone RP4-683H9 on chromosome 1 Contains the 3'
             end of the PHGDH gene for phosphoglycerate dehydrogenase
             and the HMGCS2 gene for
             3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
             (mitochondrial), complete sequence
          Length = 65882

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    atggggaggcagcgtggggg 62
             ||||||||||||||||||||
Sbjct: 17240 atggggaggcagcgtggggg 17221
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>emb|AL161781.12| Human DNA sequence from clone RP11-297B17 on chromosome 9 Contains the
             5' end of the PAX5 gene for paired box gene 5 (B-cell
             lineage specific activator protein) (BSAP), a ribosomal
             protein L32 (RPL32) pseudogene and five CpG islands,
             complete sequence
          Length = 159096

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    aggagaaggtggcatctgag 94
             ||||||||||||||||||||
Sbjct: 77172 aggagaaggtggcatctgag 77191
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>emb|Z77666.1|CEK08E7 Caenorhabditis elegans Cosmid K08E7, complete sequence
          Length = 38464

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   gaagcatcataacttcttga 169
             ||||||||||||||||||||
Sbjct: 29884 gaagcatcataacttcttga 29903
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>gb|AC103937.16| Mus musculus chromosome 3, clone RP23-229C5, complete sequence
          Length = 179805

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   agaagcaagcatgcttccct 142
             ||||||||||||||||||||
Sbjct: 31467 agaagcaagcatgcttccct 31448
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>ref|XM_516557.1| PREDICTED: Pan troglodytes similar to hypothetical protein
            (LOC460476), mRNA
          Length = 10203

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 64   acagaggatacaggagaaggtgg 86
            ||||||||| |||||||||||||
Sbjct: 7579 acagaggatgcaggagaaggtgg 7601
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>ref|NM_001457.1| Homo sapiens filamin B, beta (actin binding protein 278) (FLNB), mRNA
          Length = 9432

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 64   acagaggatacaggagaaggtgg 86
            ||||||||| |||||||||||||
Sbjct: 5667 acagaggatgcaggagaaggtgg 5689
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>gb|AC156992.13| Mus musculus chromosome 7, clone RP23-474C17, complete sequence
          Length = 178169

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 126    agcaagcatgcttccctcc 144
              |||||||||||||||||||
Sbjct: 143117 agcaagcatgcttccctcc 143099
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>gb|AC125192.3| Mus musculus BAC clone RP23-266B4 from chromosome 8, complete sequence
          Length = 199459

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 74    caggagaaggtggcatctgagga 96
             |||| ||||||||||||||||||
Sbjct: 40375 caggggaaggtggcatctgagga 40353
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>ref|XM_824433.1| Trypanosoma brucei TREU927 phosphatidylinositol 3-related kinase
            (Tb11.01.6300) partial mRNA
          Length = 8583

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 165  cttgacacagtatcacagt 183
            |||||||||||||||||||
Sbjct: 3754 cttgacacagtatcacagt 3772
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>emb|CR974431.11| Pig DNA sequence from clone CH242-511J12 on chromosome 17, complete
              sequence
          Length = 207434

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 68     aggatacaggagaaggtgg 86
              |||||||||||||||||||
Sbjct: 177209 aggatacaggagaaggtgg 177191
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>emb|CR848687.8| Zebrafish DNA sequence from clone DKEY-46H11 in linkage group 7,
             complete sequence
          Length = 87887

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 96    agaatatatacagtacatg 114
             |||||||||||||||||||
Sbjct: 63116 agaatatatacagtacatg 63098
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>emb|AL512442.10| Human DNA sequence from clone RP11-105A24 on chromosome 13 Contains a
             polymerase (RNA) III (DNA directed) polypeptide K (POLR3K)
             pseudogene, complete sequence
          Length = 113884

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 22    aatttcactttncaaatgggaa 43
             ||||||||||| ||||||||||
Sbjct: 89337 aatttcactttacaaatgggaa 89316
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>emb|AL137066.15| Human DNA sequence from clone RP11-10I9 on chromosome 9 Contains the 5'
             end of the gene for a novel protein similar to spermatid
             WD-repeat protein (FLJ90410, FLJ35921), the gene for a
             novel protein similar to B-box and SPRY-domain containing
             protein (BSPRY) (FLJ20150), a novel gene (FLJ39748), a
             novel gene, the ALAD gene for aminolevulinate delta-
             dehydratase (ALADH), the POLE3 gene for the polymerase
             (DNA directed) epsilon 3 (p17 subunit) (p17, YBL1, Ybl1,
             CHRAC17, CHARAC17), the 5' end of the RGS3 gene for the
             regulator of G-protein signalling 3 (C2PA, RGP3, FLJ20370,
             PDZ-RGS3) and six CpG islands, complete sequence
          Length = 137718

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 76    ggagaaggtggcatctgag 94
             |||||||||||||||||||
Sbjct: 34568 ggagaaggtggcatctgag 34586
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>emb|BX641085.1|HSM806893 Homo sapiens mRNA; cDNA DKFZp686E1669 (from clone DKFZp686E1669)
          Length = 9002

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 64   acagaggatacaggagaaggtgg 86
            ||||||||| |||||||||||||
Sbjct: 5226 acagaggatgcaggagaaggtgg 5248
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>emb|AL606464.11| Mouse DNA sequence from clone RP23-462P2 on chromosome 13 Contains the 3'
              end of the Slc17a1 gene for solute carrier family 17
              vesicular glutamate transporter) member 1, the gene for a
              novel solute carrier family 17 (Slc17a) member, a U1 small
              nuclear ribonucleoprotein 1C (Snrp1c) pseudogene, a H2B
              histone family (H2b) pseudogene, the gene for a novel H2A
              histone family (H2a) member, a novel gene, the gene for the
              ortholog of human secretagogin, EF-hand calcium binding
              protein SCGN and the 3' end of a novel gene, complete
              sequence
          Length = 183698

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 169    acacagtatcacagttcac 187
              |||||||||||||||||||
Sbjct: 180311 acacagtatcacagttcac 180329
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>emb|CR749793.1| Homo sapiens mRNA; cDNA DKFZp686A1668 (from clone DKFZp686A1668)
          Length = 7416

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 64   acagaggatacaggagaaggtgg 86
            ||||||||| |||||||||||||
Sbjct: 5114 acagaggatgcaggagaaggtgg 5136
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>gb|AC106045.5| Homo sapiens BAC clone RP11-29H20 from 4, complete sequence
          Length = 183003

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 130    agcatgcttccctcctaca 148
              |||||||||||||||||||
Sbjct: 104157 agcatgcttccctcctaca 104139
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>gb|AC093533.2| Homo sapiens chromosome 5 clone RP11-46C20, complete sequence
          Length = 154814

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 82    ggtggcatctgaggagaat 100
             |||||||||||||||||||
Sbjct: 86764 ggtggcatctgaggagaat 86746
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>gb|AC158591.2| Pan troglodytes BAC clone CH251-526G18 from chromosome unknown, complete
              sequence
          Length = 179276

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 80     aaggtggcatctgaggaga 98
              |||||||||||||||||||
Sbjct: 165226 aaggtggcatctgaggaga 165244
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>dbj|AB191258.1| Homo sapiens FLNB mRNA for filamin B, complete cds
          Length = 9405

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 64   acagaggatacaggagaaggtgg 86
            ||||||||| |||||||||||||
Sbjct: 5646 acagaggatgcaggagaaggtgg 5668
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>gb|AC155842.4| Mus musculus 6 BAC RP24-122N23 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 177409

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 82     ggtggcatctgaggagaat 100
              |||||||||||||||||||
Sbjct: 131869 ggtggcatctgaggagaat 131887



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 113   tgagggatttagaagcaag 131
             |||||||||||||||||||
Sbjct: 36136 tgagggatttagaagcaag 36154
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>emb|BX890617.13| Zebrafish DNA sequence from clone DKEYP-84F11 in linkage group 19,
              complete sequence
          Length = 182182

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 155    atcataacttcttgacaca 173
              |||||||||||||||||||
Sbjct: 124550 atcataacttcttgacaca 124532
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>dbj|AP003476.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB2033H1
          Length = 179650

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 80    aaggtggcatctgaggaga 98
             |||||||||||||||||||
Sbjct: 84186 aaggtggcatctgaggaga 84168
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>gb|AC161018.4| Pan troglodytes BAC clone CH251-345F11 from chromosome unknown, complete
              sequence
          Length = 153379

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 80     aaggtggcatctgaggaga 98
              |||||||||||||||||||
Sbjct: 136473 aaggtggcatctgaggaga 136455
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>gb|AF042166.1|AF042166 Homo sapiens beta-filamin mRNA, complete cds
          Length = 9432

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 64   acagaggatacaggagaaggtgg 86
            ||||||||| |||||||||||||
Sbjct: 5667 acagaggatgcaggagaaggtgg 5689
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>gb|AF043045.1|AF043045 Homo sapiens actin-binding protein homolog ABP-278 mRNA, complete cds
          Length = 9473

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 64   acagaggatacaggagaaggtgg 86
            ||||||||| |||||||||||||
Sbjct: 5701 acagaggatgcaggagaaggtgg 5723
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>emb|AL833551.1|HSM804864 Homo sapiens mRNA; cDNA DKFZp686O033 (from clone DKFZp686O033)
          Length = 6513

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 64   acagaggatacaggagaaggtgg 86
            ||||||||| |||||||||||||
Sbjct: 1804 acagaggatgcaggagaaggtgg 1826
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>emb|CT025608.12| Mouse DNA sequence from clone RP23-292F17 on chromosome 9, complete
             sequence
          Length = 200204

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 157   cataacttcttgacacagt 175
             |||||||||||||||||||
Sbjct: 66260 cataacttcttgacacagt 66242
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>dbj|AB209889.1| Homo sapiens mRNA for filamin B, beta (actin binding protein 278)
            variant protein
          Length = 6330

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 64   acagaggatacaggagaaggtgg 86
            ||||||||| |||||||||||||
Sbjct: 2570 acagaggatgcaggagaaggtgg 2592
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>emb|AL928593.4| Mouse DNA sequence from clone RP23-100E9 on chromosome 2, complete
              sequence
          Length = 195840

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 135    gcttccctcctacaggaag 153
              |||||||||||||||||||
Sbjct: 184017 gcttccctcctacaggaag 183999


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,739,470
Number of Sequences: 3902068
Number of extensions: 1739470
Number of successful extensions: 132041
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131856
Number of HSP's gapped (non-prelim): 182
length of query: 196
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 174
effective length of database: 17,147,199,772
effective search space: 2983612760328
effective search space used: 2983612760328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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