ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal31d14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK059404.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 3e-29
2ref|XM_473782.1| Oryza sativa (japonica cultivar-group), predic... 135 1e-28
3dbj|AK100301.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
4dbj|AK072200.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
5emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4,... 100 6e-18
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 100 6e-18
7dbj|AK073515.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 6e-18
8ref|XM_480915.1| Oryza sativa (japonica cultivar-group), mRNA 62 1e-06
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
10dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
11dbj|AP004657.2| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
12dbj|AK120070.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
13gb|AC131191.4| Mus musculus BAC clone RP24-464B16 from chromosom... 48 0.019
14gb|AC130714.3| Mus musculus BAC clone RP23-367L18 from chromosom... 48 0.019
15gb|AC104470.5| Homo sapiens 3 BAC RP11-552N17 (Roswell Park Canc... 44 0.29
16gb|AC074191.3| Homo sapiens chromosome 11 clone RP11-502G22, com... 44 0.29
17emb|BX119977.10| Zebrafish DNA sequence from clone CH211-198A3 i... 44 0.29
18emb|AL662893.12| Mouse DNA sequence from clone RP23-202G21 on ch... 44 0.29
19ref|XM_726203.1| Plasmodium yoelii yoelii str. 17XNL GTP cyclohy... 42 1.2
20gb|U21317.3| Caenorhabditis elegans cosmid B0495, complete sequence 42 1.2
21emb|AL157364.15| Human DNA sequence from clone RP11-31H2 on chro... 42 1.2
22gb|AF486640.1| Plasmodium yoelii yoelii GTP cyclohydrolase I (gt... 42 1.2
23gb|U23168.1| Caenorhabditis elegans cosmid B0228, complete sequence 42 1.2
24ref|NM_182100.2| Caenorhabditis elegans Temporarily Assigned Gen... 42 1.2
25ref|NM_063224.2| Caenorhabditis elegans Temporarily Assigned Gen... 42 1.2
26dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
27gb|AC084596.1|CBRG42F08 Caenorhabditis briggsae cosmid G42F08, c... 42 1.2
28dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
29dbj|AB112588.1| Satsuma dwarf virus CP gene for coat proteins, p... 42 1.2
30gb|AC102414.8| Mus musculus chromosome 15, clone RP24-474D5, com... 40 4.6
31gb|AE014841.1| Plasmodium falciparum 3D7 chromosome 11 section 6... 40 4.6
32gb|AC109162.12| Mus musculus chromosome 7, clone RP24-177G14, co... 40 4.6
33emb|AL353643.10| Human DNA sequence from clone RP11-359J23 on ch... 40 4.6
34gb|AF214671.8| Homo sapiens chromosome 8 clone GS1-42F21 map 8qt... 40 4.6
35emb|AL592149.8| Mouse DNA sequence from clone RP23-283N14 on chr... 40 4.6
36gb|AF495874.1| Plasmodium falciparum FAC8 coatomer delta subunit... 40 4.6
37gb|AC007268.5| Arabidopsis thaliana chromosome 2 clone T27D6 map... 40 4.6
38gb|AC105218.4| Homo sapiens chromosome 8, clone RP11-410F13, com... 40 4.6
39gb|AC097535.3| Homo sapiens BAC clone RP11-802H3 from 4, complet... 40 4.6
40gb|AC021500.6| Homo sapiens chromosome 8, clone RP11-135K1, comp... 40 4.6
41gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, co... 40 4.6
42gb|AC027653.3| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 4.6
43gb|AY104424.1| Zea mays PCO061312 mRNA sequence 40 4.6
44dbj|AP001972.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 4.6
45gb|AC064793.3| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 4.6
46dbj|AP005713.2| Homo sapiens genomic DNA, chromosome 8q24, clone... 40 4.6
47emb|AL929277.9| Mouse DNA sequence from clone RP23-153J22 on chr... 40 4.6
48gb|AC150681.2| Mus musculus BAC clone RP24-490A22 from 7, comple... 40 4.6
49dbj|AP006374.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 4.6
50gb|AC171210.1| Mus musculus BAC clone RP23-36D15 from chromosome... 40 4.6
51gb|AC158142.19| Mus musculus chromosome 15, clone RP24-342H15, c... 40 4.6 
>dbj|AK059404.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-B09, full
           insert sequence
          Length = 694

 Score =  137 bits (69), Expect = 3e-29
 Identities = 123/141 (87%)
 Strand = Plus / Minus

                                                                       
Query: 190 ggcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcaggt 249
           |||||||||||| || ||||| ||||||||||||||||||||||||| || |||||||| 
Sbjct: 575 ggcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcagga 516

                                                                       
Query: 250 gatgtggtagtagtgcttacacgccatgttccccacctcctcaccaccagagtactcctc 309
           || ||||||||| || || ||  |||| || ||||||||||||||| | || || |||||
Sbjct: 515 gaagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctc 456

                                
Query: 310 ctggcatatgctgcattttct 330
           |||||||||||||||||||||
Sbjct: 455 ctggcatatgctgcattttct 435
to top
>ref|XM_473782.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1104

 Score =  135 bits (68), Expect = 1e-28
 Identities = 122/140 (87%)
 Strand = Plus / Minus

                                                                        
Query: 191  gcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcaggtg 250
            ||||||||||| || ||||| ||||||||||||||||||||||||| || |||||||| |
Sbjct: 1088 gcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcaggag 1029

                                                                        
Query: 251  atgtggtagtagtgcttacacgccatgttccccacctcctcaccaccagagtactcctcc 310
            | ||||||||| || || ||  |||| || ||||||||||||||| | || || ||||||
Sbjct: 1028 aagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctcc 969

                                
Query: 311  tggcatatgctgcattttct 330
            ||||||||||||||||||||
Sbjct: 968  tggcatatgctgcattttct 949
to top
>dbj|AK100301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077P18, full
            insert sequence
          Length = 1493

 Score =  135 bits (68), Expect = 1e-28
 Identities = 122/140 (87%)
 Strand = Plus / Minus

                                                                        
Query: 191  gcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcaggtg 250
            ||||||||||| || ||||| ||||||||||||||||||||||||| || |||||||| |
Sbjct: 1243 gcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcaggag 1184

                                                                        
Query: 251  atgtggtagtagtgcttacacgccatgttccccacctcctcaccaccagagtactcctcc 310
            | ||||||||| || || ||  |||| || ||||||||||||||| | || || ||||||
Sbjct: 1183 aagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctcc 1124

                                
Query: 311  tggcatatgctgcattttct 330
            ||||||||||||||||||||
Sbjct: 1123 tggcatatgctgcattttct 1104
to top
>dbj|AK072200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160D07, full
            insert sequence
          Length = 1363

 Score =  135 bits (68), Expect = 1e-28
 Identities = 122/140 (87%)
 Strand = Plus / Minus

                                                                        
Query: 191  gcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcaggtg 250
            ||||||||||| || ||||| ||||||||||||||||||||||||| || |||||||| |
Sbjct: 1243 gcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcaggag 1184

                                                                        
Query: 251  atgtggtagtagtgcttacacgccatgttccccacctcctcaccaccagagtactcctcc 310
            | ||||||||| || || ||  |||| || ||||||||||||||| | || || ||||||
Sbjct: 1183 aagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctcc 1124

                                
Query: 311  tggcatatgctgcattttct 330
            ||||||||||||||||||||
Sbjct: 1123 tggcatatgctgcattttct 1104
to top
>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02,
              complete sequence
          Length = 166804

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 104/122 (85%)
 Strand = Plus / Plus

                                                                          
Query: 191    gcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcaggtg 250
              ||||||||||| || ||||| ||||||||||||||||||||||||| || |||||||| |
Sbjct: 107109 gcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcaggag 107168

                                                                          
Query: 251    atgtggtagtagtgcttacacgccatgttccccacctcctcaccaccagagtactcctcc 310
              | ||||||||| || || ||  |||| || ||||||||||||||| | || || ||||||
Sbjct: 107169 aagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctcc 107228

                
Query: 311    tg 312
              ||
Sbjct: 107229 tg 107230



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 309    cctggcatatgctgcattttct 330
              ||||||||||||||||||||||
Sbjct: 107325 cctggcatatgctgcattttct 107346
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 104/122 (85%)
 Strand = Plus / Plus

                                                                            
Query: 191      gcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcaggtg 250
                ||||||||||| || ||||| ||||||||||||||||||||||||| || |||||||| |
Sbjct: 30473732 gcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcaggag 30473791

                                                                            
Query: 251      atgtggtagtagtgcttacacgccatgttccccacctcctcaccaccagagtactcctcc 310
                | ||||||||| || || ||  |||| || ||||||||||||||| | || || ||||||
Sbjct: 30473792 aagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctcc 30473851

                  
Query: 311      tg 312
                ||
Sbjct: 30473852 tg 30473853



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 309      cctggcatatgctgcattttct 330
                ||||||||||||||||||||||
Sbjct: 30473948 cctggcatatgctgcattttct 30473969
to top
>dbj|AK073515.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040F16, full
           insert sequence
          Length = 2340

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 104/122 (85%)
 Strand = Plus / Plus

                                                                       
Query: 191 gcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcaggtg 250
           ||||||||||| || ||||| ||||||||||||||||||||||||| || |||||||| |
Sbjct: 593 gcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcaggag 652

                                                                       
Query: 251 atgtggtagtagtgcttacacgccatgttccccacctcctcaccaccagagtactcctcc 310
           | ||||||||| || || ||  |||| || ||||||||||||||| | || || ||||||
Sbjct: 653 aagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctcc 712

             
Query: 311 tg 312
           ||
Sbjct: 713 tg 714



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 309 cctggcatatgctgcattttct 330
           ||||||||||||||||||||||
Sbjct: 809 cctggcatatgctgcattttct 830
to top
>ref|XM_480915.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1050

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                       
Query: 192  cgacggatttgcagatggggcaccagttcttctgccggagcca 234
            ||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 1030 cgacggatttgcagatggggcaccaattcttttgccgaagcca 988
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                          
Query: 192     cgacggatttgcagatggggcaccagttcttctgccggagcca 234
               ||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 8577507 cgacggatttgcagatggggcaccaattcttttgccgaagcca 8577465
to top
>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0087F21
          Length = 187401

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                        
Query: 192   cgacggatttgcagatggggcaccagttcttctgccggagcca 234
             ||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 89418 cgacggatttgcagatggggcaccaattcttttgccgaagcca 89376
to top
>dbj|AP004657.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0031C02
          Length = 138843

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                         
Query: 192    cgacggatttgcagatggggcaccagttcttctgccggagcca 234
              ||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 107050 cgacggatttgcagatggggcaccaattcttttgccgaagcca 107008
to top
>dbj|AK120070.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003N07, full
            insert sequence
          Length = 2128

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 301  gtactcctcctggcatatgctgcattt 327
            |||||||||||||||||||||||||||
Sbjct: 1869 gtactcctcctggcatatgctgcattt 1843



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 199  tttgcagatggggcaccagttcttctgccggagccagtgctgtatgcag 247
            |||||| || || |||||||||||||||| |||||| || || ||||||
Sbjct: 1971 tttgcatattggacaccagttcttctgcctgagccactggtgaatgcag 1923
to top
>gb|AC131191.4| Mus musculus BAC clone RP24-464B16 from chromosome 18, complete
             sequence
          Length = 136832

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 44    aagcaagtcttgaaggcacaaacaaatg 71
             ||||||||| ||||||||||||||||||
Sbjct: 64970 aagcaagtcctgaaggcacaaacaaatg 64943
to top
>gb|AC130714.3| Mus musculus BAC clone RP23-367L18 from chromosome 18, complete sequence
          Length = 193184

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 44     aagcaagtcttgaaggcacaaacaaatg 71
              ||||||||| ||||||||||||||||||
Sbjct: 170442 aagcaagtcctgaaggcacaaacaaatg 170415
to top
>gb|AC104470.5| Homo sapiens 3 BAC RP11-552N17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 55862

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 43    caagcaagtcttgaaggcacaa 64
             ||||||||||||||||||||||
Sbjct: 49309 caagcaagtcttgaaggcacaa 49288
to top
>gb|AC074191.3| Homo sapiens chromosome 11 clone RP11-502G22, complete sequence
          Length = 179357

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 308   tcctggcatatgctgcattttc 329
             ||||||||||||||||||||||
Sbjct: 75165 tcctggcatatgctgcattttc 75186
to top
>emb|BX119977.10| Zebrafish DNA sequence from clone CH211-198A3 in linkage group 7,
             complete sequence
          Length = 182186

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 236   tgctgtatgcaggtgatgtggt 257
             ||||||||||||||||||||||
Sbjct: 72837 tgctgtatgcaggtgatgtggt 72816
to top
>emb|AL662893.12| Mouse DNA sequence from clone RP23-202G21 on chromosome 11, complete
             sequence
          Length = 205405

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 108   atcttgtgtctagacatttcag 129
             ||||||||||||||||||||||
Sbjct: 98271 atcttgtgtctagacatttcag 98250
to top
>ref|XM_726203.1| Plasmodium yoelii yoelii str. 17XNL GTP cyclohydrolase I (PY03300)
           partial mRNA
          Length = 948

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 84  aaagaatagacaaaaagaata 104
           |||||||||||||||||||||
Sbjct: 296 aaagaatagacaaaaagaata 316
to top
>gb|U21317.3| Caenorhabditis elegans cosmid B0495, complete sequence
          Length = 42460

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 39    aagacaagcaagtcttgaagg 59
             |||||||||||||||||||||
Sbjct: 41388 aagacaagcaagtcttgaagg 41408
to top
>emb|AL157364.15| Human DNA sequence from clone RP11-31H2 on chromosome 13 Contians the
            ATP12A gene for ATPase, H+/K+ transporting, nongastric,
            alpha polypeptide, a ribosomal protein L26 (RPL26)
            pseudogene and a CpG island, complete sequence
          Length = 91231

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 148  aacaagcagaggctgctggtg 168
            |||||||||||||||||||||
Sbjct: 2273 aacaagcagaggctgctggtg 2253
to top
>gb|AF486640.1| Plasmodium yoelii yoelii GTP cyclohydrolase I (gtp-ch) gene,
           complete cds
          Length = 1097

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 84  aaagaatagacaaaaagaata 104
           |||||||||||||||||||||
Sbjct: 342 aaagaatagacaaaaagaata 362
to top
>gb|U23168.1| Caenorhabditis elegans cosmid B0228, complete sequence
          Length = 38946

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 39   aagacaagcaagtcttgaagg 59
            |||||||||||||||||||||
Sbjct: 6929 aagacaagcaagtcttgaagg 6949
to top
>ref|NM_182100.2| Caenorhabditis elegans Temporarily Assigned Gene name family member
            (tag-308) (tag-308) mRNA, complete cds
          Length = 12105

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 39   aagacaagcaagtcttgaagg 59
            |||||||||||||||||||||
Sbjct: 4389 aagacaagcaagtcttgaagg 4409
to top
>ref|NM_063224.2| Caenorhabditis elegans Temporarily Assigned Gene name family member
            (tag-308) (tag-308) mRNA, complete cds
          Length = 22934

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 39   aagacaagcaagtcttgaagg 59
            |||||||||||||||||||||
Sbjct: 4389 aagacaagcaagtcttgaagg 4409
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                                
Query: 199     tttgcagatggggcaccagttcttctgccggagccagtgctgtatgcag 247
               |||||| || || |||||||||||||||| |||||| || || ||||||
Sbjct: 2795248 tttgcatattggacaccagttcttctgcctgagccactggtgaatgcag 2795200
to top
>gb|AC084596.1|CBRG42F08 Caenorhabditis briggsae cosmid G42F08, complete sequence
          Length = 44999

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 39    aagacaagcaagtcttgaagg 59
             |||||||||||||||||||||
Sbjct: 24279 aagacaagcaagtcttgaagg 24299
to top
>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0050G13
          Length = 150685

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                              
Query: 199   tttgcagatggggcaccagttcttctgccggagccagtgctgtatgcag 247
             |||||| || || |||||||||||||||| |||||| || || ||||||
Sbjct: 63476 tttgcatattggacaccagttcttctgcctgagccactggtgaatgcag 63428
to top
>dbj|AB112588.1| Satsuma dwarf virus CP gene for coat proteins, partial cds
          Length = 2160

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 53 ttgaaggcacaaacaaatgtt 73
          |||||||||||||||||||||
Sbjct: 61 ttgaaggcacaaacaaatgtt 41
to top
>gb|AC102414.8| Mus musculus chromosome 15, clone RP24-474D5, complete sequence
          Length = 159739

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    tccccacctcctcaccacca 298
              ||||||||||||||||||||
Sbjct: 130242 tccccacctcctcaccacca 130261
to top
>gb|AE014841.1| Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete
              sequence
          Length = 252420

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     tagaaaagaatagacaaaaa 99
              ||||||||||||||||||||
Sbjct: 106343 tagaaaagaatagacaaaaa 106362
to top
>gb|AC109162.12| Mus musculus chromosome 7, clone RP24-177G14, complete sequence
          Length = 176990

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 45     agcaagtcttgaaggcacaaacaa 68
              |||||||| |||||||||||||||
Sbjct: 133667 agcaagtcctgaaggcacaaacaa 133690
to top
>emb|AL353643.10| Human DNA sequence from clone RP11-359J23 on chromosome 10, complete
              sequence
          Length = 130077

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 30     aactgaaggaagacaagcaagtcttgaaggca 61
              ||||||||| ||| ||||||||||| ||||||
Sbjct: 106716 aactgaaggcagaaaagcaagtcttcaaggca 106685
to top
>gb|AF214671.8| Homo sapiens chromosome 8 clone GS1-42F21 map 8qtel, complete sequence
          Length = 78545

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   gacatttcaggagaatctgt 139
             ||||||||||||||||||||
Sbjct: 26683 gacatttcaggagaatctgt 26702
to top
>emb|AL592149.8| Mouse DNA sequence from clone RP23-283N14 on chromosome 13 Contains a
              novel gene, the genes for three H1, four H2a, five H2b,
              four H3 and four H4 histone family members, the 3' end of a
              variant of the Hfe gene for hemochromatosis protein (Mr2)
              and ten CpG islands, complete sequence
          Length = 184730

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     gaaaagaatagacaaaaaga 101
              ||||||||||||||||||||
Sbjct: 133981 gaaaagaatagacaaaaaga 134000
to top
>gb|AF495874.1| Plasmodium falciparum FAC8 coatomer delta subunit (delta-COP) gene,
           complete cds
          Length = 1624

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 80  tagaaaagaatagacaaaaa 99
           ||||||||||||||||||||
Sbjct: 500 tagaaaagaatagacaaaaa 519
to top
>gb|AC007268.5| Arabidopsis thaliana chromosome 2 clone T27D6 map PR1, complete
             sequence
          Length = 89685

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 90    tagacaaaaagaatacagatcttg 113
             |||| |||||||||||||||||||
Sbjct: 41216 tagaaaaaaagaatacagatcttg 41239
to top
>gb|AC105218.4| Homo sapiens chromosome 8, clone RP11-410F13, complete sequence
          Length = 138416

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  tccccacctcctcaccacca 298
            ||||||||||||||||||||
Sbjct: 4265 tccccacctcctcaccacca 4246
to top
>gb|AC097535.3| Homo sapiens BAC clone RP11-802H3 from 4, complete sequence
          Length = 72759

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   tccccacctcctcaccacca 298
             ||||||||||||||||||||
Sbjct: 20301 tccccacctcctcaccacca 20282
to top
>gb|AC021500.6| Homo sapiens chromosome 8, clone RP11-135K1, complete sequence
          Length = 160348

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   tccccacctcctcaccacca 298
             ||||||||||||||||||||
Sbjct: 62816 tccccacctcctcaccacca 62835
to top
>gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, complete sequence
          Length = 164588

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   gacatttcaggagaatctgt 139
             ||||||||||||||||||||
Sbjct: 86169 gacatttcaggagaatctgt 86150
to top
>gb|AC027653.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-166J14, complete
             sequence
          Length = 174990

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   atgttccccacctcctcacc 294
             ||||||||||||||||||||
Sbjct: 16261 atgttccccacctcctcacc 16242
to top
>gb|AY104424.1| Zea mays PCO061312 mRNA sequence
          Length = 1386

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 200  ttgcagatggggcaccagttcttc 223
            ||||||||||||||| ||||||||
Sbjct: 1368 ttgcagatggggcacaagttcttc 1345
to top
>dbj|AP001972.4| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2562J17, complete
              sequences
          Length = 215225

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    tccccacctcctcaccacca 298
              ||||||||||||||||||||
Sbjct: 128395 tccccacctcctcaccacca 128414
to top
>gb|AC064793.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-369O21, complete
              sequence
          Length = 196933

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 275    atgttccccacctcctcacc 294
              ||||||||||||||||||||
Sbjct: 138382 atgttccccacctcctcacc 138363
to top
>dbj|AP005713.2| Homo sapiens genomic DNA, chromosome 8q24, clone: KB262G12, complete
              sequence
          Length = 126698

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    gacatttcaggagaatctgt 139
              ||||||||||||||||||||
Sbjct: 106443 gacatttcaggagaatctgt 106424
to top
>emb|AL929277.9| Mouse DNA sequence from clone RP23-153J22 on chromosome 4, complete
              sequence
          Length = 144310

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     gaaggcacaaacaaatgttt 74
              ||||||||||||||||||||
Sbjct: 129598 gaaggcacaaacaaatgttt 129617
to top
>gb|AC150681.2| Mus musculus BAC clone RP24-490A22 from 7, complete sequence
          Length = 195652

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     agcaagtcttgaaggcacaa 64
              ||||||||||||||||||||
Sbjct: 158662 agcaagtcttgaaggcacaa 158643
to top
>dbj|AP006374.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT47L09, TM0218,
             complete sequence
          Length = 113213

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    agaaaagaatagacaaaaag 100
             ||||||||||||||||||||
Sbjct: 13034 agaaaagaatagacaaaaag 13053
to top
>gb|AC171210.1| Mus musculus BAC clone RP23-36D15 from chromosome 7, complete sequence
          Length = 221010

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 45     agcaagtcttgaaggcacaaacaa 68
              |||||||| |||||||||||||||
Sbjct: 204392 agcaagtcctgaaggcacaaacaa 204369
to top
>gb|AC158142.19| Mus musculus chromosome 15, clone RP24-342H15, complete sequence
          Length = 195319

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   tccccacctcctcaccacca 298
             ||||||||||||||||||||
Sbjct: 40982 tccccacctcctcaccacca 41001


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,493,250
Number of Sequences: 3902068
Number of extensions: 3493250
Number of successful extensions: 68336
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68186
Number of HSP's gapped (non-prelim): 150
length of query: 344
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 322
effective length of database: 17,147,199,772
effective search space: 5521398326584
effective search space used: 5521398326584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top