>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 42/184 (22%), Positives = 61/184 (33%), Gaps = 18/184 (9%)
 Frame = -2

Query: 499  LNRRKSVTPPDSTQLAMPPYPEAPEVSAMVQHKESFTGYIPIHDR--PEDLEKEQQRRDF 326
            + RR S +PP   + A PP P     S   Q K   +   P   R  P    +       
Sbjct: 593  IQRRYSPSPPPKRRTASPPPPPKRRASPSPQSKRRVSHSPPPKQRSSPAAKRRSPSISSK 652

Query: 325  NRDGSASSGSGHETLA-------YISDRPYTDHDVGGESNM-----AVPSQR----PQKN 194
            +R GS  S S  ET +         S RP   H       +     A P +R    P   
Sbjct: 653  HRKGSPPSRSNRETRSPPQNKRDSPSPRPRASHTSSSPPPLRRGASASPQRRQSPSPSTR 712

Query: 193  VFSRLSVKPQLPSQEITGPSMNQLLYLLSQRTKQWSNKSTSPREGGYKQLVREKGMDMPC 14
               R+S  P+    + + PS      + S R+   S +    +  G     R +      
Sbjct: 713  PIRRVSRTPEPKKTKASTPSPRSARRVSSSRSASGSPEPAPKKHQGPPSPARSRSPSANW 772

Query: 13   PPAE 2
             PA+
Sbjct: 773  SPAK 776

>DBP10_USTMA (Q4P3W3) ATP-dependent RNA helicase DBP10 (EC 3.6.1.-)|
          Length = 1154

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
 Frame = -2

Query: 355  LEKEQQRRDFNRDGSASSGSGHETLAYISDRPYTDHDVGGE-SNMAVPSQRPQKNVFSRL 179
            L  EQQ     R  S ++   H T ++I        D+ G+ + +   SQRP     +R 
Sbjct: 940  LSYEQQGSTSERGYSLNNARSH-TDSFIQQASAVSFDLAGDDATLGTQSQRPN---VTRW 995

Query: 178  SVKPQLPSQEITGPSMNQLLYLLSQRTKQWSNKSTSPREGGYKQLVREKGMDMP 17
              K +   Q   G    +++     RT+       S R G Y+   REK +DMP
Sbjct: 996  DSKKKNFIQATVGADNKKMI-----RTESGVRLPASFRSGRYEDWKREKRIDMP 1044

>SPAP_STRMU (P23504) Cell surface antigen I/II precursor [Contains: Cell surface|
            antigen I; Cell surface antigen II]
          Length = 1562

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 496  NRRKSVTPPDSTQLAMPPYPEAPEVSAMVQHKESFTGYIP 377
            N  K+ TP D T    P  P +P  S ++ +K   T Y P
Sbjct: 1483 NTVKTTTPEDPTDPTDPQDPSSPRTSTVINYKPQSTAYQP 1522

>WBP11_RAT (Q5PQQ2) WW domain-binding protein 11 (Wbp-11)|
          Length = 641

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 24/83 (28%), Positives = 29/83 (34%)
 Frame = -2

Query: 475 PPDSTQLAMPPYPEAPEVSAMVQHKESFTGYIPIHDRPEDLEKEQQRRDFNRDGSASSGS 296
           PP       PP P  P+V  M   K  F   +P   R ED+    +      D   SS S
Sbjct: 194 PPGRKPPGPPPGPPPPQVLQMYGRKVGFALDLPPRRRDEDMLYSPELAQRGHDDDMSSTS 253

Query: 295 GHETLAYISDRPYTDHDVGGESN 227
             E   Y  D     HD   E +
Sbjct: 254 --EDDGYPEDMDQDKHDDSTEDS 274

>WBP11_MOUSE (Q923D5) WW domain-binding protein 11 (WBP-11)|
          Length = 641

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 24/83 (28%), Positives = 29/83 (34%)
 Frame = -2

Query: 475 PPDSTQLAMPPYPEAPEVSAMVQHKESFTGYIPIHDRPEDLEKEQQRRDFNRDGSASSGS 296
           PP       PP P  P+V  M   K  F   +P   R ED+    +      D   SS S
Sbjct: 194 PPGRKPPGPPPGPPPPQVLQMYGRKVGFALDLPPRRRDEDMLYSPELAQRGHDDDMSSTS 253

Query: 295 GHETLAYISDRPYTDHDVGGESN 227
             E   Y  D     HD   E +
Sbjct: 254 --EDDGYPEDMDQDKHDDSTEDS 274

>WBP11_HUMAN (Q9Y2W2) WW domain-binding protein 11 (WBP-11) (SH3 domain-binding|
           protein SNP70) (Npw38-binding protein) (NpwBP)
          Length = 641

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 23/77 (29%), Positives = 27/77 (35%)
 Frame = -2

Query: 475 PPDSTQLAMPPYPEAPEVSAMVQHKESFTGYIPIHDRPEDLEKEQQRRDFNRDGSASSGS 296
           PP       PP P  P+V  M   K  F   +P   R ED+    +      D   SS S
Sbjct: 194 PPGRKPPGPPPGPPPPQVVQMYGRKVGFALDLPPRRRDEDMLYSPELAQRGHDDDVSSTS 253

Query: 295 GHETLAYISDRPYTDHD 245
             E   Y  D     HD
Sbjct: 254 --EDDGYPEDMDQDKHD 268

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 29/115 (25%), Positives = 41/115 (35%), Gaps = 3/115 (2%)
 Frame = -2

Query: 343 QQRRDFNRDGSASSGSGHETLAYISDRPYTDHDVGGESNMAVPSQRPQKNVFSRLSVKPQ 164
           QQRR + R    SS     +     +RP   H   GE        R +++  SR +    
Sbjct: 478 QQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVG------RRRRHSPSRSASPSP 531

Query: 163 LPSQEITGPSMNQLLYLLSQRTKQWSN---KSTSPREGGYKQLVREKGMDMPCPP 8
              Q+ T P M        Q  K+W +   KS+  R        R +    P PP
Sbjct: 532 RKRQKETSPRM--------QMGKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPP 578

>AROC_SILPO (Q5LX60) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 366

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 32/144 (22%), Positives = 57/144 (39%)
 Frame = -2

Query: 499 LNRRKSVTPPDSTQLAMPPYPEAPEVSAMVQHKESFTGYIPIHDRPEDLEKEQQRRDFNR 320
           L+RRK      +TQ       EA EV  +    E  T   P+    E+ +  Q+ +D+  
Sbjct: 45  LDRRKPGQNKYTTQRR-----EADEVKILSGVFEGQTTGTPVQLMIENTD--QRSKDYG- 96

Query: 319 DGSASSGSGHETLAYISDRPYTDHDVGGESNMAVPSQRPQKNVFSRLSVKPQLPSQEITG 140
           D       GH  + Y       D+  GG S+    + R      +R +++   P+ +ITG
Sbjct: 97  DIKDKFRPGHADITYFQKYGIRDYRGGGRSSARETAARVAAGGLAREAIRALAPNAQITG 156

Query: 139 PSMNQLLYLLSQRTKQWSNKSTSP 68
             +    + + +    W+    +P
Sbjct: 157 YMVQMGPHRIDRARFDWAQIEQNP 180

>PIT1_SCHPO (O14132) Sporulation protein kinase pit1 (EC 2.7.11.1)|
          Length = 650

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 553 NHPSSENCVADLMNHDMMGNSELRSNSFFHHQLEPE 660
           N P +   V D+M     G + + +N FFH  ++PE
Sbjct: 130 NDPLTLEQVQDIMRQIFKGLNHIHTNGFFHRDMKPE 165


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,938,089
Number of Sequences: 219361
Number of extensions: 1854835
Number of successful extensions: 5199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5198
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)