ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal30o07 |
|---|---|
| Clone Library Name | barley_pub |
>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 235 Score = 180 bits (456), Expect = 3e-45 Identities = 86/86 (100%), Positives = 86/86 (100%) Frame = -1 Query: 556 VSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPR 377 VSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPR Sbjct: 150 VSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPR 209 Query: 376 GFIWPVAAYRELINGDLVVDDADIGY 299 GFIWPVAAYRELINGDLVVDDADIGY Sbjct: 210 GFIWPVAAYRELINGDLVVDDADIGY 235
>PSAF_SPIOL (P12355) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 231 Score = 137 bits (345), Expect = 2e-32 Identities = 62/78 (79%), Positives = 70/78 (89%) Frame = -1 Query: 556 VSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPR 377 VSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIA+ EKKP +EIIIDV LA+ ++ R Sbjct: 150 VSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFR 209 Query: 376 GFIWPVAAYRELINGDLV 323 GF WPVAAYREL+NG+LV Sbjct: 210 GFSWPVAAYRELLNGELV 227
>PSAF_FLATR (P46486) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 232 Score = 135 bits (341), Expect = 7e-32 Identities = 60/78 (76%), Positives = 69/78 (88%) Frame = -1 Query: 556 VSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPR 377 VSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIA+ EKKP +EIIIDV LA +++ R Sbjct: 151 VSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLATKLLFR 210 Query: 376 GFIWPVAAYRELINGDLV 323 GF WPVAAYRE +NG+L+ Sbjct: 211 GFSWPVAAYREYLNGELI 228
>PSAF_SYNY3 (P29256) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 97.1 bits (240), Expect = 4e-20 Identities = 44/84 (52%), Positives = 60/84 (71%) Frame = -1 Query: 556 VSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPR 377 V G H G+F+ P +LFLYIAGWIGWVGRSYLI + K P M+E++I+V LA + + Sbjct: 77 VDGRFTHAGDFLIPSILFLYIAGWIGWVGRSYLIEIRESKNPEMQEVVINVPLAIKKMLG 136 Query: 376 GFIWPVAAYRELINGDLVVDDADI 305 GF+WP+AA E +G LV+ D++I Sbjct: 137 GFLWPLAAVGEYTSGKLVMKDSEI 160
>PSAF_PORPU (P51193) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 94.7 bits (234), Expect = 2e-19 Identities = 40/76 (52%), Positives = 56/76 (73%) Frame = -1 Query: 532 GEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 353 G+F+ PG+LFLYI GWIGWVGR YL++V+ KP +EII+DV LA + + GF WP+AA Sbjct: 105 GDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAVKFMSSGFAWPLAA 164 Query: 352 YRELINGDLVVDDADI 305 ++E +G L+ + DI Sbjct: 165 WQEFSSGQLIAPNDDI 180
>PSAF_ODOSI (P49483) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 94.0 bits (232), Expect = 3e-19 Identities = 44/82 (53%), Positives = 57/82 (69%) Frame = -1 Query: 550 GDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGF 371 G H EFI PG F+YI+GWIGWVGR YL AVS K P EIII+V LA +I+ G+ Sbjct: 99 GRWSHAAEFILPGFGFIYISGWIGWVGRKYLRAVSTTKNPTESEIIINVPLALKIMTTGY 158 Query: 370 IWPVAAYRELINGDLVVDDADI 305 IWP++A++E I+ DLV D ++ Sbjct: 159 IWPISAWQEFISNDLVALDEEV 180
>PSAF_GUITH (O78457) Photosystem I reaction center subunit III (PSI-F)| Length = 183 Score = 93.2 bits (230), Expect = 5e-19 Identities = 42/82 (51%), Positives = 56/82 (68%) Frame = -1 Query: 550 GDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGF 371 G H GEF+ PG+ FLYIAGWIGWVGR+Y+ S KP +EIIIDV +A I G+ Sbjct: 97 GRWSHAGEFMVPGLFFLYIAGWIGWVGRNYVQFASQTDKPTEKEIIIDVPVALSFISTGY 156 Query: 370 IWPVAAYRELINGDLVVDDADI 305 IWP AA++E +G+L+ + +I Sbjct: 157 IWPFAAFKEFTSGNLIAKEDEI 178
>PSAF_SYNP6 (P31083) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 159 Score = 92.8 bits (229), Expect = 7e-19 Identities = 44/84 (52%), Positives = 57/84 (67%) Frame = -1 Query: 556 VSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPR 377 V G H G+FI P +LFLYIAGWIGWVGRSYL A+ +K A +EI+IDV LA + Sbjct: 71 VDGRLDHAGDFIIPSLLFLYIAGWIGWVGRSYLQAIKSDKDAAGKEIVIDVPLAVKFSLT 130 Query: 376 GFIWPVAAYRELINGDLVVDDADI 305 GF WP+AA++E +G L+ +I Sbjct: 131 GFAWPLAAFQEFSSGKLLAKADEI 154
>PSAF_SYNEN (P0A402) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 92.8 bits (229), Expect = 7e-19 Identities = 45/84 (53%), Positives = 57/84 (67%) Frame = -1 Query: 556 VSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPR 377 V G G+F+ P VLFLYIAGWIGWVGR+YLIAV + +EIIIDV LA + + Sbjct: 76 VDGRLSRAGDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLT 135 Query: 376 GFIWPVAAYRELINGDLVVDDADI 305 GF WP+AA +EL +G+L D +I Sbjct: 136 GFAWPLAALKELASGELTAKDNEI 159
>PSAF_SYNEL (P0A401) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 92.8 bits (229), Expect = 7e-19 Identities = 45/84 (53%), Positives = 57/84 (67%) Frame = -1 Query: 556 VSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPR 377 V G G+F+ P VLFLYIAGWIGWVGR+YLIAV + +EIIIDV LA + + Sbjct: 76 VDGRLSRAGDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLT 135 Query: 376 GFIWPVAAYRELINGDLVVDDADI 305 GF WP+AA +EL +G+L D +I Sbjct: 136 GFAWPLAALKELASGELTAKDNEI 159
>PSAF_ANAVT (P31091) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 89.7 bits (221), Expect = 6e-18 Identities = 41/84 (48%), Positives = 56/84 (66%) Frame = -1 Query: 556 VSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPR 377 V G G+F+ P +LFLYIAGWIGWVGR+YL A+ + +EI +D+ LA II Sbjct: 76 VDGRLDRAGDFLIPSILFLYIAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGLALPIIAT 135 Query: 376 GFIWPVAAYRELINGDLVVDDADI 305 GF WP AA +EL++G+L D++I Sbjct: 136 GFAWPAAAVKELLSGELTAKDSEI 159
>PSAF_ANASP (P58564) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 89.0 bits (219), Expect = 1e-17 Identities = 40/84 (47%), Positives = 56/84 (66%) Frame = -1 Query: 556 VSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPR 377 V G G+F+ P +LFLYIAGWIGWVGR+YL A+ + +EI +D+ +A II Sbjct: 76 VDGRLDRAGDFLIPSILFLYIAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGIALPIIAT 135 Query: 376 GFIWPVAAYRELINGDLVVDDADI 305 GF WP AA +EL++G+L D++I Sbjct: 136 GFAWPAAAVKELLSGELTAKDSEI 159
>PSAF_CYAPA (P48115) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 186 Score = 87.8 bits (216), Expect = 2e-17 Identities = 41/82 (50%), Positives = 55/82 (67%) Frame = -1 Query: 550 GDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGF 371 G H GEF PG+LFLYIAG+IGW GRSYL AV+ +EIIID+ +A + + +GF Sbjct: 100 GRWSHAGEFTIPGLLFLYIAGFIGWSGRSYLQAVAASDNSTEKEIIIDIPVALQSVSKGF 159 Query: 370 IWPVAAYRELINGDLVVDDADI 305 +WP+AA +E +G L D +I Sbjct: 160 VWPLAALQEFSSGKLTARDEEI 181
>PSAF_CYACA (Q9TLW6) Photosystem I reaction center subunit III (PSI-F)| Length = 187 Score = 82.8 bits (203), Expect = 7e-16 Identities = 39/82 (47%), Positives = 50/82 (60%) Frame = -1 Query: 550 GDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGF 371 GD +H GEF P VLF+YIAGWIGW G+ YL KP EIIID+ A + + GF Sbjct: 101 GDWQHSGEFFIPSVLFIYIAGWIGWAGKGYLQYSKTLTKPNENEIIIDLPRALKYMFSGF 160 Query: 370 IWPVAAYRELINGDLVVDDADI 305 WP+ A +E NG L+ + +I Sbjct: 161 AWPILALKEFKNGSLLASNDEI 182
>PSAF_MASLA (O31127) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 81.3 bits (199), Expect = 2e-15 Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 1/85 (1%) Frame = -1 Query: 556 VSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGE-KKPAMREIIIDVELAARIIP 380 V G H G+F+ P +LFLYIAGWIGWVGR+YL + + +EI I++ +A I+ Sbjct: 76 VDGRLDHAGDFLIPSILFLYIAGWIGWVGRAYLQTIKKQGSNVEQKEIQIELPIALPIML 135 Query: 379 RGFIWPVAAYRELINGDLVVDDADI 305 GF WP AA +E ++G+L D +I Sbjct: 136 SGFAWPAAAIKEFLSGELTAKDEEI 160
>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 protein) Length = 227 Score = 80.5 bits (197), Expect = 3e-15 Identities = 41/78 (52%), Positives = 53/78 (67%) Frame = -1 Query: 538 HWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPV 359 H GE P FLY+AG+IG+VGR YLIAV GE KP +EIIIDV LA ++ +G WP+ Sbjct: 145 HAGEVFIPTFGFLYVAGYIGYVGRQYLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWPL 204 Query: 358 AAYRELINGDLVVDDADI 305 AA +EL G L+ + +I Sbjct: 205 AAVQELQRGTLLEKEENI 222
>PSAF_PROMA (Q9X7I4) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 183 Score = 72.8 bits (177), Expect = 7e-13 Identities = 36/81 (44%), Positives = 50/81 (61%) Frame = -1 Query: 547 DQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFI 368 ++ H G+ + PG +F+Y+AG IGW GR YL A K PA EIIID LA + + +G Sbjct: 97 NRHHEGDILIPGHIFIYVAGIIGWSGREYLRASKKTKNPAENEIIIDFALARQCLIKGAA 156 Query: 367 WPVAAYRELINGDLVVDDADI 305 WPV A ++ +GDL D +I Sbjct: 157 WPVEANKQGRSGDLREKDENI 177
>PSAF_GLOVI (Q7NH05) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 181 Score = 66.2 bits (160), Expect = 7e-11 Identities = 37/80 (46%), Positives = 47/80 (58%) Frame = -1 Query: 553 SGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRG 374 SG G+F+ P VLFL+IAG +GW GR YL E K EIIID+ A + + G Sbjct: 98 SGQLDRAGDFLIPSVLFLWIAGALGWAGRLYL----AESKGPEDEIIIDLPKAIKCLLLG 153 Query: 373 FIWPVAAYRELINGDLVVDD 314 IWPV A ELI+G + V + Sbjct: 154 LIWPVQAIPELISGKIRVPE 173
>RDRP_MRNV (Q6XNL5) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) Length = 1045 Score = 30.8 bits (68), Expect = 3.2 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -1 Query: 268 SRSQVRWAAEDEGLWCRSVWAWCRS**DHGEMEPLLYLRN 149 S +QV + + G W VW WC D+GE LYL+N Sbjct: 217 SDNQVDYRVDGGGRWQHKVWNWC----DYGE---FLYLKN 249
>EFTS_RALSO (Q8XZJ0) Elongation factor Ts (EF-Ts)| Length = 292 Score = 30.0 bits (66), Expect = 5.4 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = +2 Query: 431 GLLLAADGDEVAASDPADPAGDVEEEHAGGDELAPVPLVAAD 556 G+++A DGDEVAA D A A ++ DE+ P L+A + Sbjct: 159 GVMVAFDGDEVAAKDVAMHAAAMKPVALSSDEV-PAELIAKE 199
>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor| (MAdCAM-1) (hMAdCAM-1) Length = 406 Score = 29.6 bits (65), Expect = 7.0 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +1 Query: 142 GFSFLNTREVPFLHDPISSYTKPTQIDTTSPHPP 243 G + + +P LH P T P DTTSP PP Sbjct: 212 GLELSHRQAIPVLHSP----TSPEPPDTTSPEPP 241
>YHBP_ECOL6 (Q8FD95) UPF0306 protein yhbP| Length = 140 Score = 29.3 bits (64), Expect = 9.2 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -1 Query: 295 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 209 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECO57 (Q8XA94) UPF0306 protein yhbP| Length = 147 Score = 29.3 bits (64), Expect = 9.2 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -1 Query: 295 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 209 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,239,654 Number of Sequences: 219361 Number of extensions: 1356989 Number of successful extensions: 4006 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3750 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4000 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
