ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal31c18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 133 4e-28
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 133 4e-28
3dbj|AK121724.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 4e-28
4dbj|AK103967.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 4e-28
5dbj|AK058925.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 4e-28
6gb|AY104394.1| Zea mays PCO081620 mRNA sequence 117 3e-23
7gb|AY109905.1| Zea mays CL6208_1 mRNA sequence 101 2e-18
8gb|AC016898.6| Homo sapiens BAC clone RP11-68D19 from 7, complet... 42 1.3
9emb|BX928744.4| Zebrafish DNA sequence from clone CH211-189K9 in... 42 1.3
10ref|NM_200645.1| Danio rerio zgc:66124 (zgc:66124), mRNA 42 1.3
11gb|BC044529.1| Danio rerio, clone IMAGE:3818836, mRNA 42 1.3
12gb|BC057464.1| Danio rerio zgc:66124, mRNA (cDNA clone MGC:66124... 42 1.3
13gb|AC149608.4| Mus musculus BAC clone RP23-436E6 from 8, complet... 42 1.3
14dbj|AP003058.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.0 
>emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10,
              complete sequence
          Length = 144811

 Score =  133 bits (67), Expect = 4e-28
 Identities = 85/91 (93%)
 Strand = Plus / Plus

                                                                          
Query: 284    gcttctgatgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtatggct 343
              ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 124995 gcttctggtgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtagggct 125054

                                             
Query: 344    catcatgaccgtgccctgacatcctcttcac 374
              ||||||| || ||||||  ||||||||||||
Sbjct: 125055 catcatggccatgccctcccatcctcttcac 125085
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  133 bits (67), Expect = 4e-28
 Identities = 85/91 (93%)
 Strand = Plus / Plus

                                                                            
Query: 284      gcttctgatgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtatggct 343
                ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 21475245 gcttctggtgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtagggct 21475304

                                               
Query: 344      catcatgaccgtgccctgacatcctcttcac 374
                ||||||| || ||||||  ||||||||||||
Sbjct: 21475305 catcatggccatgccctcccatcctcttcac 21475335
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>dbj|AK121724.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081P13, full
           insert sequence
          Length = 589

 Score =  133 bits (67), Expect = 4e-28
 Identities = 85/91 (93%)
 Strand = Plus / Minus

                                                                       
Query: 284 gcttctgatgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtatggct 343
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 291 gcttctggtgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtagggct 232

                                          
Query: 344 catcatgaccgtgccctgacatcctcttcac 374
           ||||||| || ||||||  ||||||||||||
Sbjct: 231 catcatggccatgccctcccatcctcttcac 201
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>dbj|AK103967.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-A03, full
           insert sequence
          Length = 574

 Score =  133 bits (67), Expect = 4e-28
 Identities = 85/91 (93%)
 Strand = Plus / Minus

                                                                       
Query: 284 gcttctgatgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtatggct 343
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 260 gcttctggtgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtagggct 201

                                          
Query: 344 catcatgaccgtgccctgacatcctcttcac 374
           ||||||| || ||||||  ||||||||||||
Sbjct: 200 catcatggccatgccctcccatcctcttcac 170
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>dbj|AK058925.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-C02, full
           insert sequence
          Length = 701

 Score =  133 bits (67), Expect = 4e-28
 Identities = 85/91 (93%)
 Strand = Plus / Minus

                                                                       
Query: 284 gcttctgatgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtatggct 343
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 302 gcttctggtgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtagggct 243

                                          
Query: 344 catcatgaccgtgccctgacatcctcttcac 374
           ||||||| || ||||||  ||||||||||||
Sbjct: 242 catcatggccatgccctcccatcctcttcac 212
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>gb|AY104394.1| Zea mays PCO081620 mRNA sequence
          Length = 836

 Score =  117 bits (59), Expect = 3e-23
 Identities = 80/87 (91%)
 Strand = Plus / Minus

                                                                       
Query: 288 ctgatgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtatggctcatc 347
           |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 291 ctgatgcttcatcctgtgcaagttatacatgtgcttggcatggatgtagtatggctcatc 232

                                      
Query: 348 atgaccgtgccctgacatcctcttcac 374
           ||| || ||||||  ||| ||||||||
Sbjct: 231 atggccatgccctcccattctcttcac 205
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>gb|AY109905.1| Zea mays CL6208_1 mRNA sequence
          Length = 616

 Score =  101 bits (51), Expect = 2e-18
 Identities = 69/75 (92%)
 Strand = Plus / Minus

                                                                       
Query: 283 agcttctgatgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtatggc 342
           |||| ||| |||||||||||||||| |||||||||||||||||| |||| ||||||||||
Sbjct: 256 agctgctggtgcttcatcctgtgcaggttgtacatgtgcttggcgtggacgtagtatggc 197

                          
Query: 343 tcatcatgaccgtgc 357
           ||||||||| |||||
Sbjct: 196 tcatcatgagcgtgc 182
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>gb|AC016898.6| Homo sapiens BAC clone RP11-68D19 from 7, complete sequence
          Length = 81117

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 126   aaaatgctaagttcaaaataa 146
             |||||||||||||||||||||
Sbjct: 25834 aaaatgctaagttcaaaataa 25814
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>emb|BX928744.4| Zebrafish DNA sequence from clone CH211-189K9 in linkage group 17,
             complete sequence
          Length = 75766

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 135   agttcaaaataagtccaataa 155
             |||||||||||||||||||||
Sbjct: 34763 agttcaaaataagtccaataa 34743
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>ref|NM_200645.1| Danio rerio zgc:66124 (zgc:66124), mRNA
          Length = 2944

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 135  agttcaaaataagtccaataa 155
            |||||||||||||||||||||
Sbjct: 2069 agttcaaaataagtccaataa 2049
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>gb|BC044529.1| Danio rerio, clone IMAGE:3818836, mRNA
          Length = 2842

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 135 agttcaaaataagtccaataa 155
           |||||||||||||||||||||
Sbjct: 838 agttcaaaataagtccaataa 858
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>gb|BC057464.1| Danio rerio zgc:66124, mRNA (cDNA clone MGC:66124 IMAGE:2640103),
            complete cds
          Length = 2944

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 135  agttcaaaataagtccaataa 155
            |||||||||||||||||||||
Sbjct: 2069 agttcaaaataagtccaataa 2049
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>gb|AC149608.4| Mus musculus BAC clone RP23-436E6 from 8, complete sequence
          Length = 196473

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 120    cttcacaaaatgctaagttca 140
              |||||||||||||||||||||
Sbjct: 111371 cttcacaaaatgctaagttca 111351
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>dbj|AP003058.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-736J8, complete
             sequence
          Length = 83000

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   cagctttggcttcacaaaat 130
             ||||||||||||||||||||
Sbjct: 73882 cagctttggcttcacaaaat 73901


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,973,800
Number of Sequences: 3902068
Number of extensions: 2973800
Number of successful extensions: 55658
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55630
Number of HSP's gapped (non-prelim): 28
length of query: 374
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 352
effective length of database: 17,147,199,772
effective search space: 6035814319744
effective search space used: 6035814319744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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