>TRUB_BACHD (Q9KA80) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 304

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 7/121 (5%)
 Frame = -2

Query: 660 ICNSYAASAARESPSHDITMKGLDTDAPHLLANSQMADEECTQIERQFLTEVEHAEELAS 481
           +C  +A   A+    +    +G  T         +  D   T+  +Q   E    + LA+
Sbjct: 49  VCIGHATKVAQYMSDYPKAYEGEVTVGFSTTTEDRSGDTVETKTIQQPFVEAVVDQVLAT 108

Query: 480 TVGQIPDATAMPDAVEIIFQYALEYGRHGGVVEMMGKVATAMSR-------YTKAICLLR 322
            VG+I     M  AV++  +   EY R G  VE   +  T  S        Y + +C  R
Sbjct: 109 FVGEIKQIPPMYSAVKVRGKRLYEYARAGITVERPERTVTIFSLERMSDIVYEEGVCRFR 168

Query: 321 F 319
           F
Sbjct: 169 F 169

>ATG1_YARLI (Q6C7U0) Serine/threonine-protein kinase ATG1 (EC 2.7.11.1)|
           (Autophagy-related protein 1)
          Length = 710

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 25/97 (25%), Positives = 38/97 (39%)
 Frame = -2

Query: 504 EHAEELASTVGQIPDATAMPDAVEIIFQYALEYGRHGGVVEMMGKVATAMSRYTKAICLL 325
           E  E   +   ++   T    A ++IF  ALE  R   V E+ G      S YT +I +L
Sbjct: 613 ESLERAETVKKKVSSGTTHTTAEKLIFDRALEMSRDAAVQEISGDFTGCESAYTTSIWML 672

Query: 324 RFLLIEXXXXXXXXXXXLTRSDRHRLRTYIEALNARL 214
             LL +               DR  +  +I ++  RL
Sbjct: 673 EALLEDDEDGLG-------EEDRRIVERFISSITKRL 702

>COG1_MOUSE (Q9Z160) Conserved oligomeric Golgi complex component 1 (Low|
           density lipoprotein receptor defect B-complementing
           protein)
          Length = 980

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 16/88 (18%)
 Frame = -2

Query: 603 MKGLDTDAPHLLANSQMADEECTQIERQFLTEVEHAE---------------ELASTVGQ 469
           +K LD   P+ L  +  A EE   +ERQ   E+EH +               E A T+GQ
Sbjct: 10  LKRLDLRDPNALFETHGA-EEIRGLERQVRAEIEHKKEELRQMVGERYRDLIEAADTIGQ 68

Query: 468 IPD-ATAMPDAVEIIFQYALEYGRHGGV 388
           +   A  + DAV+   QY     + G V
Sbjct: 69  MRRCAEGLVDAVQATDQYCARLRQAGSV 96

>VPS45_RAT (O08700) Vacuolar protein sorting-associated protein 45 (rvps45)|
          Length = 570

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
 Frame = -2

Query: 543 ECTQIERQFLTEVEHAEELAST--VGQIPDATAMPDAVEIIFQYALEYGRHG-------- 394
           E +++E++   + +H+  L +   + Q P  T   DAV ++  YAL Y RH         
Sbjct: 349 EVSEVEQELACQNDHSSALQNVKRLLQNPKVTEF-DAVRLVMLYALHYERHSSNSLPGLI 407

Query: 393 ------GVVEMMGKVATAMSRY 346
                 GV E   K+ +A+  Y
Sbjct: 408 VDLRSKGVAEKYRKLVSAVVEY 429

>VPS45_MOUSE (P97390) Vacuolar protein sorting-associated protein 45 (mVps45)|
          Length = 570

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
 Frame = -2

Query: 543 ECTQIERQFLTEVEHAEELAST--VGQIPDATAMPDAVEIIFQYALEYGRHG-------- 394
           E +++E++   + +H+  L +   + Q P  T   DAV ++  YAL Y RH         
Sbjct: 349 EVSEVEQELACQNDHSSALQNVKRLLQNPKVTEF-DAVRLVMLYALHYERHSSNSLPGLI 407

Query: 393 ------GVVEMMGKVATAMSRY 346
                 GV E   K+ +A+  Y
Sbjct: 408 VDLRSKGVAEKYRKLVSAVVEY 429

>AROC_SYNP6 (Q5N2I0) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 362

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -2

Query: 531 IERQFLTEVEHAEELASTVGQIPDATAMPDAVEIIFQYALEYGRHGGVVEMMGK 370
           +E Q   E    E++ ST+ + PD    P  +++I     E    GGVVE + +
Sbjct: 162 LEGQIDPETVTLEQVESTIVRCPDEAIAPQMIDLIEAIGREGDSLGGVVECVAR 215


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,224,188
Number of Sequences: 219361
Number of extensions: 2060324
Number of successful extensions: 5514
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5510
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)