>gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit precursor mRNA,
           complete cds
          Length = 990

 Score =  349 bits (176), Expect = 2e-93
 Identities = 183/186 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacacaatagttatncaagattgggttcagtttcttaaatacaagagaggttccatttct 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 aacacaatagttatacaagattgggttcagtttcttaaatacaagagaggttccatttct 874

                                                                       
Query: 61  ccatgatcctatcagctcctacaccaagcccacacagatcgacaccacaagccctcatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 ccatgatcctatcagctcctacaccaagcccacacagatcgacaccacaagccctcatcc 814

                                                                       
Query: 121 tccgctgcccatctgacttgggaccnactagccaaccacgcacgcatggcagctagttag 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 813 tccgctgcccatctgacttgggaccgactagccaaccacgcacgcatggcagctacttag 754

                 
Query: 181 tagccg 186
           ||||||
Sbjct: 753 tagccg 748

>ref|NM_184976.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1038

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 31  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 85
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 921 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 867

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                       
Query: 31       tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 85
                |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 31969219 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 31969273

>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete
             sequence
          Length = 144306

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                    
Query: 31    tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 85
             |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 61171 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 61225

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                       
Query: 31       tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 85
                |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 32059731 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 32059785

>dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031N02, full
           insert sequence
          Length = 967

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 31  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 85
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 890 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 836

>dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D02, full
           insert sequence
          Length = 997

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 31  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 85
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 920 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 866

>dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-C12, full
           insert sequence
          Length = 990

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 31  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 85
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 913 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 859

>gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit precursor (PSI-F) mRNA,
           complete cds
          Length = 996

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 31  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 85
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 901 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 847

>gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 230137

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    tcttaaatacaagagaggtt 52
             ||||||||||||||||||||
Sbjct: 82654 tcttaaatacaagagaggtt 82673

>emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chromosome 1, complete
              sequence
          Length = 173580

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 55     atttctccatgatcctatcagctcctac 82
              ||||||||||||||| |||| |||||||
Sbjct: 156375 atttctccatgatccaatcacctcctac 156348

>gb|AC087698.5| Homo sapiens chromosome 8, clone RP11-25K19, complete sequence
          Length = 150750

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    caagattgggttcagtttct 35
             ||||||||||||||||||||
Sbjct: 10979 caagattgggttcagtttct 10998

>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence
          Length = 167258

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    ggttcagtttcttaaataca 43
             ||||||||||||||||||||
Sbjct: 17437 ggttcagtttcttaaataca 17456

>gb|AC090152.4| Homo sapiens chromosome 8, clone RP11-554M1, complete sequence
          Length = 118755

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    caagattgggttcagtttct 35
             ||||||||||||||||||||
Sbjct: 14523 caagattgggttcagtttct 14504

>emb|AL513406.1|CNS07EFT Human DNA sequence chromosome 8 of Homo sapiens (human)
          Length = 204955

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     caagattgggttcagtttct 35
              ||||||||||||||||||||
Sbjct: 141244 caagattgggttcagtttct 141225

>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     gagaggttccatttctccat 64
              ||||||||||||||||||||
Sbjct: 418732 gagaggttccatttctccat 418713

>emb|Z98743.1|HS181C9 Human DNA sequence from clone RP1-181C9 on chromosome 22q13.2-13.33,
             complete sequence
          Length = 92472

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 77    tcctacaccaagcccacac 95
             |||||||||||||||||||
Sbjct: 61213 tcctacaccaagcccacac 61231

>emb|AL139288.15| Human DNA sequence from clone RP5-915N17 on chromosome 1q42.11-42.3,
              complete sequence
          Length = 151563

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 30     gtttcttaaatacaagaga 48
              |||||||||||||||||||
Sbjct: 131814 gtttcttaaatacaagaga 131796

>emb|AL137251.5| Human DNA sequence from clone RP1-141N5 on chromosome 6 Contains the 3'
             end of the gene for KIAA1913 protein, complete sequence
          Length = 122354

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 61    ccatgatcctatcagctcc 79
             |||||||||||||||||||
Sbjct: 97398 ccatgatcctatcagctcc 97380

>emb|AL031433.4|HS171N11 Human DNA sequence from clone RP1-171N11 on chromosome 6q23 Contains
             the 5' end of a novel gene, the gene for UC28 protein
             (UROC28) and a CpG island, complete sequence
          Length = 129227

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 62    catgatcctatcagctcct 80
             |||||||||||||||||||
Sbjct: 79262 catgatcctatcagctcct 79244

>gb|AC120797.9| Mus musculus chromosome 18, clone RP24-81D18, complete sequence
          Length = 210631

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 68     cctatcagctcctacacca 86
              |||||||||||||||||||
Sbjct: 132618 cctatcagctcctacacca 132636

>ref|XM_627368.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_4840),
            partial mRNA
          Length = 7230

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 16   caagattgggttcagtttc 34
            |||||||||||||||||||
Sbjct: 5947 caagattgggttcagtttc 5929

>gb|S82598.1| interleukin-8=neutrophil and T-lymphocyte chemotactic and
           activating factor [cattle, alveolar macrophages, mRNA,
           643 nt]
          Length = 643

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 82  caccaagcccacacagatc 100
           |||||||||||||||||||
Sbjct: 414 caccaagcccacacagatc 396

>gb|AC154731.2| Mus musculus BAC clone RP23-121M22 from chromosome 14, complete sequence
          Length = 215346

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 16     caagattgggttcagtttc 34
              |||||||||||||||||||
Sbjct: 181076 caagattgggttcagtttc 181094

>gb|AC010679.6| Homo sapiens BAC clone RP11-128O11 from 2, complete sequence
          Length = 188937

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 60     tccatgatcctatcagctcctac 82
              |||||||||| ||||||||||||
Sbjct: 179569 tccatgatccaatcagctcctac 179591

>gb|AC154837.2| Mus musculus BAC clone RP24-576O2 from 14, complete sequence
          Length = 134124

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 16     caagattgggttcagtttc 34
              |||||||||||||||||||
Sbjct: 122152 caagattgggttcagtttc 122134

>gb|AY626273.1| Boesenbergia variegata internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene and internal
           transcribed spacer 2, complete sequence; and 26S
           ribosomal RNA gene, partial sequence
          Length = 588

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 151 gccaaccacgcacgcatgg 169
           |||||||||||||||||||
Sbjct: 363 gccaaccacgcacgcatgg 345

>gb|AY296728.1| Boesenbergia sp. NFL-2003-5 internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene and internal
           transcribed spacer 2, complete sequence; and 26S
           ribosomal RNA gene, partial sequence
          Length = 589

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 151 gccaaccacgcacgcatgg 169
           |||||||||||||||||||
Sbjct: 362 gccaaccacgcacgcatgg 344

>gb|AY296727.1| Boesenbergia sp. NFL-2003-4 internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene and internal
           transcribed spacer 2, complete sequence; and 26S
           ribosomal RNA gene, partial sequence
          Length = 586

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 151 gccaaccacgcacgcatgg 169
           |||||||||||||||||||
Sbjct: 365 gccaaccacgcacgcatgg 347

>gb|AY296726.1| Boesenbergia flavorubra internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene and internal
           transcribed spacer 2, complete sequence; and 26S
           ribosomal RNA gene, partial sequence
          Length = 551

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 151 gccaaccacgcacgcatgg 169
           |||||||||||||||||||
Sbjct: 326 gccaaccacgcacgcatgg 308

>gb|AY296725.1| Boesenbergia sp. NFL-2003-2 internal transcribed spacer 1, partial
           sequence; 5.8S ribosomal RNA gene and internal
           transcribed spacer 2, complete sequence; and 26S
           ribosomal RNA gene, partial sequence
          Length = 593

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 151 gccaaccacgcacgcatgg 169
           |||||||||||||||||||
Sbjct: 364 gccaaccacgcacgcatgg 346


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,333,506
Number of Sequences: 3902068
Number of extensions: 1333506
Number of successful extensions: 84256
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84129
Number of HSP's gapped (non-prelim): 127
length of query: 189
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 167
effective length of database: 17,147,199,772
effective search space: 2863582361924
effective search space used: 2863582361924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)