ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal31b17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MAD18_ORYSA (Q6Z4G0) MADS-box transcription factor 18 (OsMADS18)... 60 6e-09
2TRYP_SARBU (P51588) Trypsin precursor (EC 3.4.21.4) 33 0.78
3Y044_UREPA (Q9PRA1) Hypothetical protein UU044 30 5.1
4SPEE_SHIFL (Q83MF0) Spermidine synthase (EC 2.5.1.16) (Putrescin... 30 5.1
5ITA7_RAT (Q63258) Integrin alpha-7 (H36-alpha7) [Contains: Integ... 30 5.1
6SPEG_HUMAN (Q15772) Striated muscle preferentially expressed pro... 30 6.6
7HOLB_BUCAP (Q8K9J2) DNA polymerase III delta' subunit (EC 2.7.7.7) 30 8.7

>MAD18_ORYSA (Q6Z4G0) MADS-box transcription factor 18 (OsMADS18) (MADS-box|
           protein 2) (OsMADS2) (MADS-box protein 28) (OsMADS28)
           (FDRMADS7)
          Length = 249

 Score = 60.1 bits (144), Expect = 6e-09
 Identities = 33/72 (45%), Positives = 40/72 (55%)
 Frame = -3

Query: 662 REQLNEATNIHHQEQLSGAXXXXXXXXXXTAQDSMAPPNIGPYQSRGGGDPEPQPSPAQA 483
           +E+ N   N + +EQ +GA          TA D +   N    Q RG G+ E QPSPAQA
Sbjct: 176 KEKNNAIINTNREEQ-NGATPSTSSPTPVTAPDPIPTTNNSQSQPRGSGESEAQPSPAQA 234

Query: 482 NNSNLPPWMLRT 447
            NS LPPWMLRT
Sbjct: 235 GNSKLPPWMLRT 246



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>TRYP_SARBU (P51588) Trypsin precursor (EC 3.4.21.4)|
          Length = 254

 Score = 33.1 bits (74), Expect = 0.78
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +3

Query: 96  GWNTKTVSTCKTIPQIH*SLHTKVQPQDRAHRSAKKKGN*NVETRHCSL*CRKSSRQEDP 275
           GW TK   TC ++P+    +   +  Q     +  K G+   +T  C+   +K + Q D 
Sbjct: 149 GWGTKCFLTCVSLPKTLQEVEVDIVDQKACASNEFKYGSQIQDTMVCAYALKKDACQGDS 208

Query: 276 IHPVAKTHGLIGGYT-GSHCRR 338
             P+   + L+G  + GS C R
Sbjct: 209 GGPLVANNQLVGIVSWGSGCAR 230



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>Y044_UREPA (Q9PRA1) Hypothetical protein UU044|
          Length = 782

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 569 QDSMAPPNIGPYQSRGGGDPEPQPSPAQA-NNSN 471
           ++ + PPN  P +     +P PQP P Q  NNSN
Sbjct: 139 KEELLPPNPPPPKEEPKPEPNPQPQPQQVPNNSN 172



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>SPEE_SHIFL (Q83MF0) Spermidine synthase (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase) (SPDSY)
          Length = 287

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +3

Query: 279 HPVAKTHGLIGGYTGSHCRRWTAHRQLASIVGACQAPLSPSGGVV*GCRQ--PSSVADGA 452
           H  AK   +IGG  G+  R  T H+ + SI       +    GVV  CRQ  P+  A   
Sbjct: 74  HGHAKHVLIIGGGDGAMLREVTRHKNVESI-----TMVEIDAGVVSFCRQYLPNHNAGSY 128

Query: 453 EHPRWQIAV 479
           + PR+Q+ +
Sbjct: 129 DDPRFQLVI 137



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>ITA7_RAT (Q63258) Integrin alpha-7 (H36-alpha7) [Contains: Integrin alpha-7|
           heavy chain; Integrin alpha-7 light chain]
          Length = 1106

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 560 MAPPNIGPYQSRGGGDPEPQPSPAQANN 477
           +A  + GPY++ G  D +P+PSP  AN+
Sbjct: 206 LAQVDDGPYEAGGEKDQDPRPSPVPANS 233



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>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3223

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 566  DSMAPPNIGPYQSRGGGDPEPQPSPAQANNSNLPPWMLRTI 444
            D+  PP   P Q +    PEP+P P +A+    PP  L+T+
Sbjct: 2201 DAPQPPAPQPAQDKA---PEPRPEPVRASKPAPPPQALQTL 2238



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>HOLB_BUCAP (Q8K9J2) DNA polymerase III delta' subunit (EC 2.7.7.7)|
          Length = 328

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 124 VKPYRKSIKAYTRKSNHKIVLIDQRKKKG 210
           +KPY+K I+ + RK  H  +LI  +K  G
Sbjct: 8   IKPYKKIIRLHERKKAHHAILIKTQKGMG 36


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,561,326
Number of Sequences: 219361
Number of extensions: 2405844
Number of successful extensions: 7332
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7310
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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