ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal30m13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190784.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 807 Score = 617 bits (311), Expect = e-173 Identities = 444/488 (90%), Gaps = 3/488 (0%) Strand = Plus / Minus Query: 122 tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaagaag 181 ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 800 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 741 Query: 182 acgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgatgttg 241 |||||||||||||| |||||||||||||||||| ||||||| || ||||||||||||||| Sbjct: 740 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 681 Query: 242 agctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgatcccc 301 |||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| || Sbjct: 680 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 621 Query: 302 agctgcgccagccgccccacgaacagctcgttcgacttggtgaacccgaacagcggacct 361 |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || Sbjct: 620 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 561 Query: 362 ccctcgctgaggccgagggctgagcggaagcctttgccgggggcgatgacggccttgtcg 421 |||||||||||||| || || ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 560 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgacggccttgtcg 501 Query: 422 aggccggt---gggctgctcgtcgacgaacctgccgcggtctccgagcgcgccgatggcg 478 ||||| || ||||| ||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 500 aggcccgtcaccggctggtcgtcgacgaagctgccgcggtcgccgagcgcgccgatggcg 441 Query: 479 ccgaggagggtgaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatg 538 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 440 ccgaggagggtgaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatc 381 Query: 539 ccggtctcaaggttcagctgggacaggatgcccttgccggtgatggcctctnccaagatc 598 || ||||| ||||||||||| | |||||| ||||| |||||||||||||| ||| |||| Sbjct: 380 cccgtctccaggttcagctgcgccaggattcccttcccggtgatggcctcacccaggatc 321 Query: 599 gacgcggc 606 |||||||| Sbjct: 320 gacgcggc 313 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 314 cgccccacgaacagctcgttcgacttggtgaacccga 350 ||||| ||||||||||||||| ||||||||| |||| Sbjct: 293 cgcccgacgaacagctcgttctccttggtgaaaccga 257
>dbj|AK104275.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-B11, full insert sequence Length = 1055 Score = 617 bits (311), Expect = e-173 Identities = 444/488 (90%), Gaps = 3/488 (0%) Strand = Plus / Minus Query: 122 tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaagaag 181 ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 885 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 826 Query: 182 acgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgatgttg 241 |||||||||||||| |||||||||||||||||| ||||||| || ||||||||||||||| Sbjct: 825 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 766 Query: 242 agctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgatcccc 301 |||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| || Sbjct: 765 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 706 Query: 302 agctgcgccagccgccccacgaacagctcgttcgacttggtgaacccgaacagcggacct 361 |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || Sbjct: 705 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 646 Query: 362 ccctcgctgaggccgagggctgagcggaagcctttgccgggggcgatgacggccttgtcg 421 |||||||||||||| || || ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 645 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgacggccttgtcg 586 Query: 422 aggccggt---gggctgctcgtcgacgaacctgccgcggtctccgagcgcgccgatggcg 478 ||||| || ||||| ||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 585 aggcccgtcaccggctggtcgtcgacgaagctgccgcggtcgccgagcgcgccgatggcg 526 Query: 479 ccgaggagggtgaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatg 538 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 525 ccgaggagggtgaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatc 466 Query: 539 ccggtctcaaggttcagctgggacaggatgcccttgccggtgatggcctctnccaagatc 598 || ||||| ||||||||||| | |||||| ||||| |||||||||||||| ||| |||| Sbjct: 465 cccgtctccaggttcagctgcgccaggattcccttcccggtgatggcctcacccaggatc 406 Query: 599 gacgcggc 606 |||||||| Sbjct: 405 gacgcggc 398 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 314 cgccccacgaacagctcgttcgacttggtgaacccga 350 ||||| ||||||||||||||| ||||||||| |||| Sbjct: 378 cgcccgacgaacagctcgttctccttggtgaaaccga 342
>dbj|AK071827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118A05, full insert sequence Length = 1057 Score = 617 bits (311), Expect = e-173 Identities = 444/488 (90%), Gaps = 3/488 (0%) Strand = Plus / Minus Query: 122 tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaagaag 181 ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 888 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 829 Query: 182 acgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgatgttg 241 |||||||||||||| |||||||||||||||||| ||||||| || ||||||||||||||| Sbjct: 828 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 769 Query: 242 agctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgatcccc 301 |||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| || Sbjct: 768 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 709 Query: 302 agctgcgccagccgccccacgaacagctcgttcgacttggtgaacccgaacagcggacct 361 |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || Sbjct: 708 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 649 Query: 362 ccctcgctgaggccgagggctgagcggaagcctttgccgggggcgatgacggccttgtcg 421 |||||||||||||| || || ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 648 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgacggccttgtcg 589 Query: 422 aggccggt---gggctgctcgtcgacgaacctgccgcggtctccgagcgcgccgatggcg 478 ||||| || ||||| ||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 588 aggcccgtcaccggctggtcgtcgacgaagctgccgcggtcgccgagcgcgccgatggcg 529 Query: 479 ccgaggagggtgaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatg 538 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 528 ccgaggagggtgaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatc 469 Query: 539 ccggtctcaaggttcagctgggacaggatgcccttgccggtgatggcctctnccaagatc 598 || ||||| ||||||||||| | |||||| ||||| |||||||||||||| ||| |||| Sbjct: 468 cccgtctccaggttcagctgcgccaggattcccttcccggtgatggcctcacccaggatc 409 Query: 599 gacgcggc 606 |||||||| Sbjct: 408 gacgcggc 401 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 314 cgccccacgaacagctcgttcgacttggtgaacccga 350 ||||| ||||||||||||||| ||||||||| |||| Sbjct: 381 cgcccgacgaacagctcgttctccttggtgaaaccga 345
>dbj|AK058284.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D09, full insert sequence Length = 1064 Score = 617 bits (311), Expect = e-173 Identities = 444/488 (90%), Gaps = 3/488 (0%) Strand = Plus / Minus Query: 122 tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaagaag 181 ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 885 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 826 Query: 182 acgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgatgttg 241 |||||||||||||| |||||||||||||||||| ||||||| || ||||||||||||||| Sbjct: 825 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 766 Query: 242 agctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgatcccc 301 |||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| || Sbjct: 765 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 706 Query: 302 agctgcgccagccgccccacgaacagctcgttcgacttggtgaacccgaacagcggacct 361 |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || Sbjct: 705 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 646 Query: 362 ccctcgctgaggccgagggctgagcggaagcctttgccgggggcgatgacggccttgtcg 421 |||||||||||||| || || ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 645 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgacggccttgtcg 586 Query: 422 aggccggt---gggctgctcgtcgacgaacctgccgcggtctccgagcgcgccgatggcg 478 ||||| || ||||| ||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 585 aggcccgtcaccggctggtcgtcgacgaagctgccgcggtcgccgagcgcgccgatggcg 526 Query: 479 ccgaggagggtgaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatg 538 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 525 ccgaggagggtgaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatc 466 Query: 539 ccggtctcaaggttcagctgggacaggatgcccttgccggtgatggcctctnccaagatc 598 || ||||| ||||||||||| | |||||| ||||| |||||||||||||| ||| |||| Sbjct: 465 cccgtctccaggttcagctgcgccaggattcccttcccggtgatggcctcacccaggatc 406 Query: 599 gacgcggc 606 |||||||| Sbjct: 405 gacgcggc 398 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 314 cgccccacgaacagctcgttcgacttggtgaacccga 350 ||||| ||||||||||||||| ||||||||| |||| Sbjct: 378 cgcccgacgaacagctcgttctccttggtgaaaccga 342
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 611 bits (308), Expect = e-171 Identities = 441/485 (90%), Gaps = 3/485 (0%) Strand = Plus / Minus Query: 122 tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaagaag 181 ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37692662 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 37692603 Query: 182 acgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgatgttg 241 |||||||||||||| |||||||||||||||||| ||||||| || ||||||||||||||| Sbjct: 37692602 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 37692543 Query: 242 agctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgatcccc 301 |||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| || Sbjct: 37692542 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 37692483 Query: 302 agctgcgccagccgccccacgaacagctcgttcgacttggtgaacccgaacagcggacct 361 |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || Sbjct: 37692482 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 37692423 Query: 362 ccctcgctgaggccgagggctgagcggaagcctttgccgggggcgatgacggccttgtcg 421 |||||||||||||| || || ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 37692422 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgacggccttgtcg 37692363 Query: 422 aggccggt---gggctgctcgtcgacgaacctgccgcggtctccgagcgcgccgatggcg 478 ||||| || ||||| ||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 37692362 aggcccgtcaccggctggtcgtcgacgaagctgccgcggtcgccgagcgcgccgatggcg 37692303 Query: 479 ccgaggagggtgaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatg 538 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37692302 ccgaggagggtgaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatc 37692243 Query: 539 ccggtctcaaggttcagctgggacaggatgcccttgccggtgatggcctctnccaagatc 598 || ||||| ||||||||||| | |||||| ||||| |||||||||||||| ||| |||| Sbjct: 37692242 cccgtctccaggttcagctgcgccaggattcccttcccggtgatggcctcacccaggatc 37692183 Query: 599 gacgc 603 ||||| Sbjct: 37692182 gacgc 37692178 Score = 75.8 bits (38), Expect = 2e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 188 ttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgatgttgagctgc 247 |||||||| | |||||||||||||| |||||||| | |||||||| |||||||||||| Sbjct: 33384238 ttgaagaggatgagcggctcgatctaactgatggggatgccggtctcaatgttgagctgc 33384179 Query: 248 gccagcgcgcccttgcccgtga 269 |||| ||||||||||| |||| Sbjct: 33384178 cccagggcgcccttgccggtga 33384157 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 493 gaggatgaagaagaggaggagg 514 |||||||||||||||||||||| Sbjct: 7516458 gaggatgaagaagaggaggagg 7516479 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 314 cgccccacgaacagctcgttcgacttggtgaacccga 350 ||||| ||||||||||||||| ||||||||| |||| Sbjct: 37690776 cgcccgacgaacagctcgttctccttggtgaaaccga 37690740 Score = 42.1 bits (21), Expect = 2.2 Identities = 42/49 (85%) Strand = Plus / Minus Query: 533 gggatgccggtctcaaggttcagctgggacaggatgcccttgccggtga 581 |||||||||||||||| ||| ||||| |||| |||||||||||||| Sbjct: 33384205 gggatgccggtctcaatgttgagctgccccagggcgcccttgccggtga 33384157 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 46 acaaacaggcaaagcacgtacgtac 70 |||||| |||||||||||||||||| Sbjct: 29256942 acaaaccggcaaagcacgtacgtac 29256918
>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0677H08 Length = 178830 Score = 611 bits (308), Expect = e-171 Identities = 441/485 (90%), Gaps = 3/485 (0%) Strand = Plus / Minus Query: 122 tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaagaag 181 ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 153136 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 153077 Query: 182 acgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgatgttg 241 |||||||||||||| |||||||||||||||||| ||||||| || ||||||||||||||| Sbjct: 153076 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 153017 Query: 242 agctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgatcccc 301 |||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| || Sbjct: 153016 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 152957 Query: 302 agctgcgccagccgccccacgaacagctcgttcgacttggtgaacccgaacagcggacct 361 |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || Sbjct: 152956 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 152897 Query: 362 ccctcgctgaggccgagggctgagcggaagcctttgccgggggcgatgacggccttgtcg 421 |||||||||||||| || || ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 152896 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgacggccttgtcg 152837 Query: 422 aggccggt---gggctgctcgtcgacgaacctgccgcggtctccgagcgcgccgatggcg 478 ||||| || ||||| ||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 152836 aggcccgtcaccggctggtcgtcgacgaagctgccgcggtcgccgagcgcgccgatggcg 152777 Query: 479 ccgaggagggtgaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatg 538 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 152776 ccgaggagggtgaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatc 152717 Query: 539 ccggtctcaaggttcagctgggacaggatgcccttgccggtgatggcctctnccaagatc 598 || ||||| ||||||||||| | |||||| ||||| |||||||||||||| ||| |||| Sbjct: 152716 cccgtctccaggttcagctgcgccaggattcccttcccggtgatggcctcacccaggatc 152657 Query: 599 gacgc 603 ||||| Sbjct: 152656 gacgc 152652 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 314 cgccccacgaacagctcgttcgacttggtgaacccga 350 ||||| ||||||||||||||| ||||||||| |||| Sbjct: 151250 cgcccgacgaacagctcgttctccttggtgaaaccga 151214
>dbj|AP003235.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0039A07 Length = 148892 Score = 611 bits (308), Expect = e-171 Identities = 441/485 (90%), Gaps = 3/485 (0%) Strand = Plus / Minus Query: 122 tcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaagaag 181 ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20963 tcgtcgtcgtcgctgacgaacttgccggtgccggggttgatggcggcgatgaagaagaag 20904 Query: 182 acgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgatgttg 241 |||||||||||||| |||||||||||||||||| ||||||| || ||||||||||||||| Sbjct: 20903 acgacgttgaagaggacgagcggctcgatctcgttgatggggacgccggtctcgatgttg 20844 Query: 242 agctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgatcccc 301 |||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| || Sbjct: 20843 agctgcgcgagggcgcccttgccggtgatgatctcgccgatgatggagaaggcgatgccg 20784 Query: 302 agctgcgccagccgccccacgaacagctcgttcgacttggtgaacccgaacagcggacct 361 |||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||| || Sbjct: 20783 agctgcgcgagccggccgacgaacagctcgttggccttggtgaagccgaacagcgggccg 20724 Query: 362 ccctcgctgaggccgagggctgagcggaagcctttgccgggggcgatgacggccttgtcg 421 |||||||||||||| || || ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 20723 ccctcgctgaggcccagcgcggagcggaagcccttgcccggggcgatgacggccttgtcg 20664 Query: 422 aggccggt---gggctgctcgtcgacgaacctgccgcggtctccgagcgcgccgatggcg 478 ||||| || ||||| ||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 20663 aggcccgtcaccggctggtcgtcgacgaagctgccgcggtcgccgagcgcgccgatggcg 20604 Query: 479 ccgaggagggtgaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatg 538 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20603 ccgaggagggtgaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatc 20544 Query: 539 ccggtctcaaggttcagctgggacaggatgcccttgccggtgatggcctctnccaagatc 598 || ||||| ||||||||||| | |||||| ||||| |||||||||||||| ||| |||| Sbjct: 20543 cccgtctccaggttcagctgcgccaggattcccttcccggtgatggcctcacccaggatc 20484 Query: 599 gacgc 603 ||||| Sbjct: 20483 gacgc 20479 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 314 cgccccacgaacagctcgttcgacttggtgaacccga 350 ||||| ||||||||||||||| ||||||||| |||| Sbjct: 19077 cgcccgacgaacagctcgttctccttggtgaaaccga 19041
>gb|AY104328.1| Zea mays PCO078649 mRNA sequence Length = 1252 Score = 605 bits (305), Expect = e-170 Identities = 451/500 (90%) Strand = Plus / Minus Query: 125 tcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaagaagacg 184 ||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| | Sbjct: 989 tcctcgccgatgatgaacctgccattgccggggttgatggcggcgatgaagaagaagagg 930 Query: 185 acgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgatgttgagc 244 |||||||||| ||||||||||| |||||| ||||||||||||| ||||||||||||||| Sbjct: 929 acgttgaagatgacgagcggctctatctcgttgatgggcacccccgtctcgatgttgagc 870 Query: 245 tgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgatccccagc 304 ||||||||||||||||| |||||||||||||| ||||||||||||||||| | |||||| Sbjct: 869 tgcgccagcgcgcccttccccgtgatgatctcgccgatgatggagaaggccacgcccagc 810 Query: 305 tgcgccagccgccccacgaacagctcgttcgacttggtgaacccgaacagcggacctccc 364 ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 809 tgcgccatccgccccacgaacagctcgttcgacttggtgaacccgaacagcggccctccc 750 Query: 365 tcgctgaggccgagggctgagcggaagcctttgccgggggcgatgacggccttgtcgagg 424 ||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||| Sbjct: 749 tcgctgaggccgagggcgccgcggaagcccttgccgggttggatgacggccttgtcgagg 690 Query: 425 ccggtgggctgctcgtcgacgaacctgccgcggtctccgagcgcgccgatggcgccgagg 484 |||||| || |||||||||||| | ||||||||| ||||| |||||||||||||| ||| Sbjct: 689 ccggtgacctcctcgtcgacgaagcggccgcggtccccgagagcgccgatggcgccaagg 630 Query: 485 agggtgaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatgccggtc 544 |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| ||| Sbjct: 629 agggtgaagaggatgaagaacaggaggagaggctccgcctcgtagatggggatgcccgtc 570 Query: 545 tcaaggttcagctgggacaggatgcccttgccggtgatggcctctnccaagatcgacgcg 604 || ||||||||||||| ||||||||||| ||||| ||||||||| | | | ||| ||| Sbjct: 569 tcgaggttcagctgggcaaggatgcccttcccggtaatggcctctccaagtagcgatgcg 510 Query: 605 gcgaagccaatcatggcaac 624 || ||||||| ||||||||| Sbjct: 509 gcaaagccaagcatggcaac 490
>gb|AY291061.1| Zea mays photosystem II subunit PsbS precursor, mRNA, complete cds; nuclear gene for chloroplast product Length = 1024 Score = 597 bits (301), Expect = e-167 Identities = 450/500 (90%) Strand = Plus / Minus Query: 125 tcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaagaagacg 184 ||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| | Sbjct: 799 tcctcgccgatgatgaacctgccattgccggggttgatggcggcgatgaagaagaagagg 740 Query: 185 acgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgatgttgagc 244 |||||||||| ||||||||||| |||||| ||||||||||||| ||||||||||||||| Sbjct: 739 acgttgaagatgacgagcggctctatctcgttgatgggcacccccgtctcgatgttgagc 680 Query: 245 tgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgatccccagc 304 ||||||||||||||||| |||||||||||||| ||||||||||||||||| | |||||| Sbjct: 679 tgcgccagcgcgcccttccccgtgatgatctcgccgatgatggagaaggccacgcccagc 620 Query: 305 tgcgccagccgccccacgaacagctcgttcgacttggtgaacccgaacagcggacctccc 364 ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 619 tgcgccatccgccccacgaacagctcgttcgacttggtgaacccgaacagcggccctccc 560 Query: 365 tcgctgaggccgagggctgagcggaagcctttgccgggggcgatgacggccttgtcgagg 424 ||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||| Sbjct: 559 tcgctgaggccgagggcgccgcggaagcccttgccgggttggatgacggccttgtcgagg 500 Query: 425 ccggtgggctgctcgtcgacgaacctgccgcggtctccgagcgcgccgatggcgccgagg 484 |||||| || |||||||||||| | ||||||||||||||| |||||||||||||| ||| Sbjct: 499 ccggtgacctcctcgtcgacgaagcggccgcggtctccgagagcgccgatggcgccaagg 440 Query: 485 agggtgaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatgccggtc 544 |||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||| Sbjct: 439 agggtgaagaggatgaagaacaggaggaggggttccgcttcgtagatggggatgcccgtc 380 Query: 545 tcaaggttcagctgggacaggatgcccttgccggtgatggcctctnccaagatcgacgcg 604 || ||||||||||| | ||||||||||| ||||| ||||||||| | | | ||| ||| Sbjct: 379 tccaggttcagctgcgcaaggatgcccttcccggtaatggcctctccaagtagcgatgcg 320 Query: 605 gcgaagccaatcatggcaac 624 || ||||||| ||||||||| Sbjct: 319 gcaaagccaagcatggcaac 300
>ref|XM_474468.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 747 Score = 307 bits (155), Expect = 2e-80 Identities = 230/255 (90%) Strand = Plus / Minus Query: 118 gtcgtcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaa 177 |||||||| ||| || ||| |||||||||||| ||||||||||||||||||| |||||| Sbjct: 741 gtcgtcgttgtcgtcggtgacgaacttgccggttccggggttgatggcggcgaagaagaa 682 Query: 178 gaagacgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgat 237 ||||| || ||||||||| | |||||||||||||||| ||||||| || ||||||||||| Sbjct: 681 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 622 Query: 238 gttgagctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgat 297 |||||||||||||||||||||||| || ||||||||||| ||||||| |||||||||||| Sbjct: 621 gttgagctgcgccagcgcgcccttcccggtgatgatctcgccgatgagggagaaggcgat 562 Query: 298 ccccagctgcgccagccgccccacgaacagctcgttcgacttggtgaacccgaacagcgg 357 |||||||||||| || || |||||||| |||||||||| ||||||||||||||||||||| Sbjct: 561 ccccagctgcgcgaggcgacccacgaagagctcgttcgccttggtgaacccgaacagcgg 502 Query: 358 acctccctcgctgag 372 || ||||||||||| Sbjct: 501 gccaccctcgctgag 487 Score = 141 bits (71), Expect = 3e-30 Identities = 113/127 (88%) Strand = Plus / Minus Query: 455 cggtctccgagcgcgccgatggcgccgaggagggtgaagaggatgaagaagaggaggagg 514 ||||| || ||||||||||||||||| || || ||||||||||||||||||||||| || Sbjct: 407 cggtcgcccagcgcgccgatggcgcccagcagcgtgaagaggatgaagaagaggagcagc 348 Query: 515 ggctccgcctcgtagatcgggatgccggtctcaaggttcagctgggacaggatgcccttg 574 ||||| ||||||||||| |||||||| ||||| ||||| ||||| | ||||||||||||| Sbjct: 347 ggctcggcctcgtagatggggatgcccgtctccaggttgagctgcgccaggatgcccttg 288 Query: 575 ccggtga 581 ||||||| Sbjct: 287 ccggtga 281 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 316 ccccacgaacagctcgttcgacttggtgaacccga 350 ||||||||||||||||||| |||||||||||||| Sbjct: 234 ccccacgaacagctcgttctccttggtgaacccga 200 Score = 44.1 bits (22), Expect = 0.55 Identities = 76/94 (80%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatgccggtctcaag 549 |||||||||| |||||||||||| ||||| ||||| ||| |||| ||||||||| | Sbjct: 681 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 622 Query: 550 gttcagctgggacaggatgcccttgccggtgatg 583 ||| ||||| | ||| |||||| ||||||||| Sbjct: 621 gttgagctgcgccagcgcgcccttcccggtgatg 588
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 307 bits (155), Expect = 2e-80 Identities = 230/255 (90%) Strand = Plus / Minus Query: 118 gtcgtcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaa 177 |||||||| ||| || ||| |||||||||||| ||||||||||||||||||| |||||| Sbjct: 35373095 gtcgtcgttgtcgtcggtgacgaacttgccggttccggggttgatggcggcgaagaagaa 35373036 Query: 178 gaagacgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgat 237 ||||| || ||||||||| | |||||||||||||||| ||||||| || ||||||||||| Sbjct: 35373035 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 35372976 Query: 238 gttgagctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgat 297 |||||||||||||||||||||||| || ||||||||||| ||||||| |||||||||||| Sbjct: 35372975 gttgagctgcgccagcgcgcccttcccggtgatgatctcgccgatgagggagaaggcgat 35372916 Query: 298 ccccagctgcgccagccgccccacgaacagctcgttcgacttggtgaacccgaacagcgg 357 |||||||||||| || || |||||||| |||||||||| ||||||||||||||||||||| Sbjct: 35372915 ccccagctgcgcgaggcgacccacgaagagctcgttcgccttggtgaacccgaacagcgg 35372856 Query: 358 acctccctcgctgag 372 || ||||||||||| Sbjct: 35372855 gccaccctcgctgag 35372841 Score = 141 bits (71), Expect = 3e-30 Identities = 113/127 (88%) Strand = Plus / Minus Query: 455 cggtctccgagcgcgccgatggcgccgaggagggtgaagaggatgaagaagaggaggagg 514 ||||| || ||||||||||||||||| || || ||||||||||||||||||||||| || Sbjct: 35372761 cggtcgcccagcgcgccgatggcgcccagcagcgtgaagaggatgaagaagaggagcagc 35372702 Query: 515 ggctccgcctcgtagatcgggatgccggtctcaaggttcagctgggacaggatgcccttg 574 ||||| ||||||||||| |||||||| ||||| ||||| ||||| | ||||||||||||| Sbjct: 35372701 ggctcggcctcgtagatggggatgcccgtctccaggttgagctgcgccaggatgcccttg 35372642 Query: 575 ccggtga 581 ||||||| Sbjct: 35372641 ccggtga 35372635 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 316 ccccacgaacagctcgttcgacttggtgaacccga 350 ||||||||||||||||||| |||||||||||||| Sbjct: 35372588 ccccacgaacagctcgttctccttggtgaacccga 35372554 Score = 44.1 bits (22), Expect = 0.55 Identities = 76/94 (80%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatgccggtctcaag 549 |||||||||| |||||||||||| ||||| ||||| ||| |||| ||||||||| | Sbjct: 35373035 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 35372976 Query: 550 gttcagctgggacaggatgcccttgccggtgatg 583 ||| ||||| | ||| |||||| ||||||||| Sbjct: 35372975 gttgagctgcgccagcgcgcccttcccggtgatg 35372942 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 483 ggagggtgaagaggatgaagaagaggaggagg 514 |||||||||||| ||||| || |||||||||| Sbjct: 21803277 ggagggtgaagacgatgatgatgaggaggagg 21803246
>dbj|AK071638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101I15, full insert sequence Length = 1116 Score = 307 bits (155), Expect = 2e-80 Identities = 230/255 (90%) Strand = Plus / Minus Query: 118 gtcgtcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaa 177 |||||||| ||| || ||| |||||||||||| ||||||||||||||||||| |||||| Sbjct: 905 gtcgtcgttgtcgtcggtgacgaacttgccggttccggggttgatggcggcgaagaagaa 846 Query: 178 gaagacgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgat 237 ||||| || ||||||||| | |||||||||||||||| ||||||| || ||||||||||| Sbjct: 845 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 786 Query: 238 gttgagctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgat 297 |||||||||||||||||||||||| || ||||||||||| ||||||| |||||||||||| Sbjct: 785 gttgagctgcgccagcgcgcccttcccggtgatgatctcgccgatgagggagaaggcgat 726 Query: 298 ccccagctgcgccagccgccccacgaacagctcgttcgacttggtgaacccgaacagcgg 357 |||||||||||| || || |||||||| |||||||||| ||||||||||||||||||||| Sbjct: 725 ccccagctgcgcgaggcgacccacgaagagctcgttcgccttggtgaacccgaacagcgg 666 Query: 358 acctccctcgctgag 372 || ||||||||||| Sbjct: 665 gccaccctcgctgag 651 Score = 141 bits (71), Expect = 3e-30 Identities = 113/127 (88%) Strand = Plus / Minus Query: 455 cggtctccgagcgcgccgatggcgccgaggagggtgaagaggatgaagaagaggaggagg 514 ||||| || ||||||||||||||||| || || ||||||||||||||||||||||| || Sbjct: 571 cggtcgcccagcgcgccgatggcgcccagcagcgtgaagaggatgaagaagaggagcagc 512 Query: 515 ggctccgcctcgtagatcgggatgccggtctcaaggttcagctgggacaggatgcccttg 574 ||||| ||||||||||| |||||||| ||||| ||||| ||||| | ||||||||||||| Sbjct: 511 ggctcggcctcgtagatggggatgcccgtctccaggttgagctgcgccaggatgcccttg 452 Query: 575 ccggtga 581 ||||||| Sbjct: 451 ccggtga 445 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 316 ccccacgaacagctcgttcgacttggtgaacccga 350 ||||||||||||||||||| |||||||||||||| Sbjct: 398 ccccacgaacagctcgttctccttggtgaacccga 364 Score = 44.1 bits (22), Expect = 0.55 Identities = 76/94 (80%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatgccggtctcaag 549 |||||||||| |||||||||||| ||||| ||||| ||| |||| ||||||||| | Sbjct: 845 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 786 Query: 550 gttcagctgggacaggatgcccttgccggtgatg 583 ||| ||||| | ||| |||||| ||||||||| Sbjct: 785 gttgagctgcgccagcgcgcccttcccggtgatg 752
>emb|AL732342.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0518A01, complete sequence Length = 32686 Score = 307 bits (155), Expect = 2e-80 Identities = 230/255 (90%) Strand = Plus / Minus Query: 118 gtcgtcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaa 177 |||||||| ||| || ||| |||||||||||| ||||||||||||||||||| |||||| Sbjct: 4925 gtcgtcgttgtcgtcggtgacgaacttgccggttccggggttgatggcggcgaagaagaa 4866 Query: 178 gaagacgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgat 237 ||||| || ||||||||| | |||||||||||||||| ||||||| || ||||||||||| Sbjct: 4865 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 4806 Query: 238 gttgagctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgat 297 |||||||||||||||||||||||| || ||||||||||| ||||||| |||||||||||| Sbjct: 4805 gttgagctgcgccagcgcgcccttcccggtgatgatctcgccgatgagggagaaggcgat 4746 Query: 298 ccccagctgcgccagccgccccacgaacagctcgttcgacttggtgaacccgaacagcgg 357 |||||||||||| || || |||||||| |||||||||| ||||||||||||||||||||| Sbjct: 4745 ccccagctgcgcgaggcgacccacgaagagctcgttcgccttggtgaacccgaacagcgg 4686 Query: 358 acctccctcgctgag 372 || ||||||||||| Sbjct: 4685 gccaccctcgctgag 4671 Score = 141 bits (71), Expect = 3e-30 Identities = 113/127 (88%) Strand = Plus / Minus Query: 455 cggtctccgagcgcgccgatggcgccgaggagggtgaagaggatgaagaagaggaggagg 514 ||||| || ||||||||||||||||| || || ||||||||||||||||||||||| || Sbjct: 4591 cggtcgcccagcgcgccgatggcgcccagcagcgtgaagaggatgaagaagaggagcagc 4532 Query: 515 ggctccgcctcgtagatcgggatgccggtctcaaggttcagctgggacaggatgcccttg 574 ||||| ||||||||||| |||||||| ||||| ||||| ||||| | ||||||||||||| Sbjct: 4531 ggctcggcctcgtagatggggatgcccgtctccaggttgagctgcgccaggatgcccttg 4472 Query: 575 ccggtga 581 ||||||| Sbjct: 4471 ccggtga 4465 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 316 ccccacgaacagctcgttcgacttggtgaacccga 350 |||||||||||| |||||| |||||||||||||| Sbjct: 4418 ccccacgaacagttcgttctccttggtgaacccga 4384 Score = 44.1 bits (22), Expect = 0.55 Identities = 76/94 (80%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatgccggtctcaag 549 |||||||||| |||||||||||| ||||| ||||| ||| |||| ||||||||| | Sbjct: 4865 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 4806 Query: 550 gttcagctgggacaggatgcccttgccggtgatg 583 ||| ||||| | ||| |||||| ||||||||| Sbjct: 4805 gttgagctgcgccagcgcgcccttcccggtgatg 4772
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 307 bits (155), Expect = 2e-80 Identities = 230/255 (90%) Strand = Plus / Minus Query: 118 gtcgtcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaa 177 |||||||| ||| || ||| |||||||||||| ||||||||||||||||||| |||||| Sbjct: 168939 gtcgtcgttgtcgtcggtgacgaacttgccggttccggggttgatggcggcgaagaagaa 168880 Query: 178 gaagacgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgat 237 ||||| || ||||||||| | |||||||||||||||| ||||||| || ||||||||||| Sbjct: 168879 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 168820 Query: 238 gttgagctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgat 297 |||||||||||||||||||||||| || ||||||||||| ||||||| |||||||||||| Sbjct: 168819 gttgagctgcgccagcgcgcccttcccggtgatgatctcgccgatgagggagaaggcgat 168760 Query: 298 ccccagctgcgccagccgccccacgaacagctcgttcgacttggtgaacccgaacagcgg 357 |||||||||||| || || |||||||| |||||||||| ||||||||||||||||||||| Sbjct: 168759 ccccagctgcgcgaggcgacccacgaagagctcgttcgccttggtgaacccgaacagcgg 168700 Query: 358 acctccctcgctgag 372 || ||||||||||| Sbjct: 168699 gccaccctcgctgag 168685 Score = 141 bits (71), Expect = 3e-30 Identities = 113/127 (88%) Strand = Plus / Minus Query: 455 cggtctccgagcgcgccgatggcgccgaggagggtgaagaggatgaagaagaggaggagg 514 ||||| || ||||||||||||||||| || || ||||||||||||||||||||||| || Sbjct: 168605 cggtcgcccagcgcgccgatggcgcccagcagcgtgaagaggatgaagaagaggagcagc 168546 Query: 515 ggctccgcctcgtagatcgggatgccggtctcaaggttcagctgggacaggatgcccttg 574 ||||| ||||||||||| |||||||| ||||| ||||| ||||| | ||||||||||||| Sbjct: 168545 ggctcggcctcgtagatggggatgcccgtctccaggttgagctgcgccaggatgcccttg 168486 Query: 575 ccggtga 581 ||||||| Sbjct: 168485 ccggtga 168479 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 316 ccccacgaacagctcgttcgacttggtgaacccga 350 ||||||||||||||||||| |||||||||||||| Sbjct: 168432 ccccacgaacagctcgttctccttggtgaacccga 168398 Score = 44.1 bits (22), Expect = 0.55 Identities = 76/94 (80%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatgccggtctcaag 549 |||||||||| |||||||||||| ||||| ||||| ||| |||| ||||||||| | Sbjct: 168879 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 168820 Query: 550 gttcagctgggacaggatgcccttgccggtgatg 583 ||| ||||| | ||| |||||| ||||||||| Sbjct: 168819 gttgagctgcgccagcgcgcccttcccggtgatg 168786
>dbj|D84392.1| Oryza sativa (japonica cultivar-group) PSII-S mRNA for 22 kDa protein of photosystem II precursor, complete cds Length = 1108 Score = 291 bits (147), Expect = 1e-75 Identities = 228/255 (89%) Strand = Plus / Minus Query: 118 gtcgtcgtcctcgccgctgatgaacttgccggtgccggggttgatggcggcgatgaagaa 177 |||||||| ||| || ||| |||||||||||| ||||||||||||||||||| |||||| Sbjct: 889 gtcgtcgttgtcgtcggtgacgaacttgccggttccggggttgatggcggcgaagaagaa 830 Query: 178 gaagacgacgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgat 237 ||||| || ||||||||| | |||||||||||||||| ||||||| || ||||||||||| Sbjct: 829 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 770 Query: 238 gttgagctgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgat 297 |||||||||||||||||||||||| || ||||||||||| ||||||| |||||||||||| Sbjct: 769 gttgagctgcgccagcgcgcccttcccggtgatgatctcgccgatgagggagaaggcgat 710 Query: 298 ccccagctgcgccagccgccccacgaacagctcgttcgacttggtgaacccgaacagcgg 357 ||||| ||||| || || |||||||| |||||||||| ||||||||||||||||||||| Sbjct: 709 ccccacgtgcgcgaggcgacccacgaagagctcgttcgccttggtgaacccgaacagcgg 650 Query: 358 acctccctcgctgag 372 || ||||||||||| Sbjct: 649 gccaccctcgctgag 635 Score = 141 bits (71), Expect = 3e-30 Identities = 113/127 (88%) Strand = Plus / Minus Query: 455 cggtctccgagcgcgccgatggcgccgaggagggtgaagaggatgaagaagaggaggagg 514 ||||| || ||||||||||||||||| || || ||||||||||||||||||||||| || Sbjct: 555 cggtcgcccagcgcgccgatggcgcccagcagcgtgaagaggatgaagaagaggagcagc 496 Query: 515 ggctccgcctcgtagatcgggatgccggtctcaaggttcagctgggacaggatgcccttg 574 ||||| ||||||||||| |||||||| ||||| ||||| ||||| | ||||||||||||| Sbjct: 495 ggctcggcctcgtagatggggatgcccgtctccaggttgagctgcgccaggatgcccttg 436 Query: 575 ccggtga 581 ||||||| Sbjct: 435 ccggtga 429 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 316 ccccacgaacagctcgttcgacttggtgaacccga 350 ||||||||||||||||||| |||||||||||||| Sbjct: 382 ccccacgaacagctcgttctccttggtgaacccga 348 Score = 44.1 bits (22), Expect = 0.55 Identities = 76/94 (80%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatgccggtctcaag 549 |||||||||| |||||||||||| ||||| ||||| ||| |||| ||||||||| | Sbjct: 829 gaagaggatgttgaagaggaggagcggctcgatctcgttgatggggacgccggtctcgat 770 Query: 550 gttcagctgggacaggatgcccttgccggtgatg 583 ||| ||||| | ||| |||||| ||||||||| Sbjct: 769 gttgagctgcgccagcgcgcccttcccggtgatg 736
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 77.8 bits (39), Expect = 4e-11 Identities = 45/47 (95%) Strand = Plus / Plus Query: 491 aagaggatgaagaagaggaggaggggctccgcctcgtagatcgggat 537 |||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct: 7552985 aagaggatgaagaagatgaggaggggctccacctcgtagatcgggat 7553031
>dbj|AP005246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0061L20 Length = 138926 Score = 77.8 bits (39), Expect = 4e-11 Identities = 45/47 (95%) Strand = Plus / Plus Query: 491 aagaggatgaagaagaggaggaggggctccgcctcgtagatcgggat 537 |||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct: 131299 aagaggatgaagaagatgaggaggggctccacctcgtagatcgggat 131345
>dbj|AP004303.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0407H12 Length = 167754 Score = 77.8 bits (39), Expect = 4e-11 Identities = 45/47 (95%) Strand = Plus / Plus Query: 491 aagaggatgaagaagaggaggaggggctccgcctcgtagatcgggat 537 |||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct: 58395 aagaggatgaagaagatgaggaggggctccacctcgtagatcgggat 58441
>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0415A04 Length = 160669 Score = 75.8 bits (38), Expect = 2e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 188 ttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgatgttgagctgc 247 |||||||| | |||||||||||||| |||||||| | |||||||| |||||||||||| Sbjct: 60404 ttgaagaggatgagcggctcgatctaactgatggggatgccggtctcaatgttgagctgc 60345 Query: 248 gccagcgcgcccttgcccgtga 269 |||| ||||||||||| |||| Sbjct: 60344 cccagggcgcccttgccggtga 60323 Score = 42.1 bits (21), Expect = 2.2 Identities = 42/49 (85%) Strand = Plus / Minus Query: 533 gggatgccggtctcaaggttcagctgggacaggatgcccttgccggtga 581 |||||||||||||||| ||| ||||| |||| |||||||||||||| Sbjct: 60371 gggatgccggtctcaatgttgagctgccccagggcgcccttgccggtga 60323
>gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0029B02, complete sequence Length = 156649 Score = 73.8 bits (37), Expect = 6e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 185 acgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgatgttgagc 244 ||||||||||| ||||||| ||| ||||| ||| ||| | | |||||||||||||||| Sbjct: 154598 acgttgaagaggacgagcgactcaatctcagtgacggggatgctggtctcgatgttgagc 154539 Query: 245 tgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgat 297 |||| || || ||||||| |||| |||||| | |||||||||||||||||| Sbjct: 154538 tgcgtgagggcaaccttgccggtgacgatctcgctgatgatggagaaggcgat 154486 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 473 atggcgccgaggagggtgaagaggatgaagaagaggaggaggggctccgcctcgtagatc 532 |||| ||||||||||||||||||| |||| ||||||||||| |||||| |||| ||||| Sbjct: 154427 atggtgccgaggagggtgaagaggttgaacaagaggaggagaggctccacctcatagatt 154368 Query: 533 gggat 537 ||||| Sbjct: 154367 gggat 154363 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 403 ggcgatgacggccttgtcgaggcc 426 |||||||||||||||||||||||| Sbjct: 154491 ggcgatgacggccttgtcgaggcc 154468
>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09, complete sequence Length = 145070 Score = 73.8 bits (37), Expect = 6e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 185 acgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgatgttgagc 244 ||||||||||| ||||||| ||| ||||| ||| ||| | | |||||||||||||||| Sbjct: 13474 acgttgaagaggacgagcgactcaatctcagtgacggggatgctggtctcgatgttgagc 13415 Query: 245 tgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgat 297 |||| || || ||||||| |||| |||||| | |||||||||||||||||| Sbjct: 13414 tgcgtgagggcaaccttgccggtgacgatctcgctgatgatggagaaggcgat 13362 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 473 atggcgccgaggagggtgaagaggatgaagaagaggaggaggggctccgcctcgtagatc 532 |||| ||||||||||||||||||| |||| ||||||||||| |||||| |||| ||||| Sbjct: 13303 atggtgccgaggagggtgaagaggttgaacaagaggaggagaggctccacctcatagatt 13244 Query: 533 gggat 537 ||||| Sbjct: 13243 gggat 13239 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 403 ggcgatgacggccttgtcgaggcc 426 |||||||||||||||||||||||| Sbjct: 13367 ggcgatgacggccttgtcgaggcc 13344
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 73.8 bits (37), Expect = 6e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 185 acgttgaagagcacgagcggctcgatctcgctgatgggcaccccggtctcgatgttgagc 244 ||||||||||| ||||||| ||| ||||| ||| ||| | | |||||||||||||||| Sbjct: 4644131 acgttgaagaggacgagcgactcaatctcagtgacggggatgctggtctcgatgttgagc 4644072 Query: 245 tgcgccagcgcgcccttgcccgtgatgatctccccgatgatggagaaggcgat 297 |||| || || ||||||| |||| |||||| | |||||||||||||||||| Sbjct: 4644071 tgcgtgagggcaaccttgccggtgacgatctcgctgatgatggagaaggcgat 4644019 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 473 atggcgccgaggagggtgaagaggatgaagaagaggaggaggggctccgcctcgtagatc 532 |||| ||||||||||||||||||| |||| ||||||||||| |||||| |||| ||||| Sbjct: 4643960 atggtgccgaggagggtgaagaggttgaacaagaggaggagaggctccacctcatagatt 4643901 Query: 533 gggat 537 ||||| Sbjct: 4643900 gggat 4643896 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 403 ggcgatgacggccttgtcgaggcc 426 |||||||||||||||||||||||| Sbjct: 4644024 ggcgatgacggccttgtcgaggcc 4644001
>gb|DQ067929.1| Xerophyta humilis PSII subunit PsbS mRNA, partial cds; chloroplast Length = 479 Score = 69.9 bits (35), Expect = 1e-08 Identities = 107/131 (81%) Strand = Plus / Minus Query: 203 ggctcgatctcgctgatgggcaccccggtctcgatgttgagctgcgccagcgcgcccttg 262 |||||||| |||||||||||||| || ||||||||||| | ||| |||| || ||||| Sbjct: 437 ggctcgatgtcgctgatgggcacgcctgtctcgatgtttaactgagccaaagcacccttc 378 Query: 263 cccgtgatgatctccccgatgatggagaaggcgatccccagctgcgccagccgccccacg 322 || ||||||| ||| ||||||| ||||| || || || || ||||| || || |||||| Sbjct: 377 ccggtgatgacctctccgatgagtgagaacgcaataccgagttgcgctagtcgtcccacg 318 Query: 323 aacagctcgtt 333 || |||||||| Sbjct: 317 aagagctcgtt 307 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 488 gtgaagaggatgaagaagaggaggaggggctc 519 ||||||||||||||||| |||||||| ||||| Sbjct: 146 gtgaagaggatgaagaaaaggaggagtggctc 115
>gb|AC160527.9| Mus musculus chromosome 7, clone RP24-269P21, complete sequence Length = 161504 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||||||||||||||| Sbjct: 38520 gaggaggatgaagaggatgaagaagaggagga 38489
>ref|XM_987483.1| PREDICTED: Mus musculus similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) (LOC671507), mRNA Length = 1254 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||||||||||||||| Sbjct: 670 gaggaggatgaagaggatgaagaagaggagga 701
>ref|XM_986380.1| PREDICTED: Mus musculus similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) (LOC666836), mRNA Length = 1254 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||||||||||||||| Sbjct: 670 gaggaggatgaagaggatgaagaagaggagga 701
>emb|AL450463.20| Human DNA sequence from clone RP13-299C14 on chromosome 20, complete sequence Length = 27854 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggagggg 516 |||||||| |||||||| |||||||||||||||||| Sbjct: 27195 gaggagggggaagaggaggaagaagaggaggagggg 27160
>ref|NM_190839.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1878 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 227 ccggtctcgatgttgagctgcgccagcgcgcccttgcccgtga 269 |||||||| |||||||||||| |||| ||||||||||| |||| Sbjct: 1211 ccggtctcaatgttgagctgccccagggcgcccttgccggtga 1169 Score = 42.1 bits (21), Expect = 2.2 Identities = 42/49 (85%) Strand = Plus / Minus Query: 533 gggatgccggtctcaaggttcagctgggacaggatgcccttgccggtga 581 |||||||||||||||| ||| ||||| |||| |||||||||||||| Sbjct: 1217 gggatgccggtctcaatgttgagctgccccagggcgcccttgccggtga 1169
>gb|AC122397.2| Mus musculus BAC clone RP24-90D21 from chromosome 15, complete sequence Length = 181742 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 484 gagggtgaagaggatgaagaagaggaggagg 514 |||| |||||||||||||||||||||||||| Sbjct: 41813 gaggatgaagaggatgaagaagaggaggagg 41783
>emb|CT009717.9| Mouse DNA sequence from clone RP23-216H9 on chromosome 13, complete sequence Length = 220233 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggaggagggg 516 ||||||||||||||||||||||||||| Sbjct: 24529 gaagaggatgaagaagaggaggagggg 24503
>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 Length = 1725576 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 484 gagggtgaagaggatgaagaagaggaggagg 514 |||||||||||||| |||||||||||||||| Sbjct: 960764 gagggtgaagaggaggaagaagaggaggagg 960794
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii Length = 2037969 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggagg 514 ||||| |||||||| ||||||||||||||||||| Sbjct: 1251125 gaggacggtgaagaagatgaagaagaggaggagg 1251092
>emb|BX571714.7| Zebrafish DNA sequence from clone DKEY-16L2 in linkage group 3, complete sequence Length = 240105 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggaggagg 514 ||||||| ||| |||||||||||||||||||||| Sbjct: 228794 gaggaggatgatgaggatgaagaagaggaggagg 228827 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 gaggatgaagaagaggagga 512 |||||||||||||||||||| Sbjct: 233392 gaggatgaagaagaggagga 233411
>gb|AC153576.3| Mus musculus 6 BAC RP23-330J17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 215953 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggagg 514 |||||||||||||||| ||||||||| ||||||| Sbjct: 105214 gaggagggtgaagagggtgaagaagatgaggagg 105181 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggagg 514 |||||||||||||||| ||||||||| ||||||| Sbjct: 105172 gaggagggtgaagagggtgaagaagatgaggagg 105139 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggagg 514 |||||||||||||||| ||||||||| ||||||| Sbjct: 105130 gaggagggtgaagagggtgaagaagatgaggagg 105097 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Minus Query: 482 aggagggtgaagaggatgaagaagaggaggagg 514 ||||||||||||||| ||||||||| ||||||| Sbjct: 105339 aggagggtgaagagggtgaagaagatgaggagg 105307 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Minus Query: 482 aggagggtgaagaggatgaagaagaggaggagg 514 ||||||||||||||| ||||||||| ||||||| Sbjct: 105297 aggagggtgaagagggtgaagaagatgaggagg 105265 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 484 gagggtgaagaggatgaagaagaggaggagg 514 ||||||||||||| ||||||||| ||||||| Sbjct: 105253 gagggtgaagagggtgaagaagatgaggagg 105223
>emb|BX914207.15| Zebrafish DNA sequence from clone DKEY-158P11 in linkage group 4, complete sequence Length = 92140 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggag 510 ||||||| |||||||||||||||||||||| Sbjct: 41953 gaggaggatgaagaggatgaagaagaggag 41924
>emb|AL732404.7| Mouse DNA sequence from clone RP23-177D21 on chromosome 2, complete sequence Length = 220275 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggaggaggg 515 |||||||||||||||||||||||||| Sbjct: 79841 gaagaggatgaagaagaggaggaggg 79816
>ref|XM_641716.1| Dictyostelium discoideum nucleomorphin (DDB0231257), partial mRNA Length = 1023 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 490 gaagaggatgaagaagaggaggagg 514 ||||||||||||||||||||||||| Sbjct: 406 gaagaggatgaagaagaggaggagg 430
>gb|BC081839.1| Rattus norvegicus high mobility group box 1, mRNA (cDNA clone MGC:93599 IMAGE:7132958), complete cds Length = 2256 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 480 cgaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||||||| ||||||||||| Sbjct: 627 cgaggaggatgaagaggatgaggaagaggagga 659
>gb|BC061779.1| Rattus norvegicus high mobility group box 1, mRNA (cDNA clone MGC:72533 IMAGE:5623285), complete cds Length = 1214 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 480 cgaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||||||| ||||||||||| Sbjct: 615 cgaggaggatgaagaggatgaggaagaggagga 647
>gb|AF140042.2| Dictyostelium discoideum putative calmodulin-binding protein CaM-BP38 mRNA, complete cds Length = 1557 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 490 gaagaggatgaagaagaggaggagg 514 ||||||||||||||||||||||||| Sbjct: 892 gaagaggatgaagaagaggaggagg 916
>gb|AC091464.8| Mus musculus chromosome 14, clone RP23-97N1, complete sequence Length = 237814 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggaggagg 514 ||||||||||||||||||||||||| Sbjct: 23785 gaagaggatgaagaagaggaggagg 23761 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggag 513 ||||||| |||||||| ||||||||||||||| Sbjct: 227092 gaggaggaagaagaggaggaagaagaggaggag 227060
>gb|AC120147.8| Mus musculus chromosome 19, clone RP24-223N20, complete sequence Length = 172853 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Minus Query: 480 cgaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||||||| ||||||||||| Sbjct: 97070 cgaggaggatgaagaggatgaggaagaggagga 97038
>ref|XM_380871.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00695.1) partial mRNA Length = 1965 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 490 gaagaggatgaagaagaggaggagg 514 ||||||||||||||||||||||||| Sbjct: 1642 gaagaggatgaagaagaggaggagg 1666
>gb|AC129590.4| Mus musculus BAC clone RP24-428B12 from chromosome 14, complete sequence Length = 180177 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 490 gaagaggatgaagaagaggaggagg 514 ||||||||||||||||||||||||| Sbjct: 42128 gaagaggatgaagaagaggaggagg 42152
>gb|AC162456.3| Mus musculus chromosome 19, clone RP23-406F15, complete sequence Length = 173042 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Minus Query: 480 cgaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||||||| ||||||||||| Sbjct: 124387 cgaggaggatgaagaggatgaggaagaggagga 124355
>emb|X00271.1|RNGCRY Rat gene for lens gamma-crystallin (gamma 3-1) Length = 3425 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggag 513 |||||||| |||||||| ||||||||||||||| Sbjct: 1505 gaggagggagaagaggaggaagaagaggaggag 1473
>ref|XM_573095.1| PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (Amphoterin) (Heparin-binding protein p30) (LOC497907), mRNA Length = 1297 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 480 cgaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||||||| ||||||||||| Sbjct: 690 cgaggaggatgaagaggatgaggaagaggagga 722
>ref|XM_575891.1| PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (Amphoterin) (Heparin-binding protein p30) (LOC500530), mRNA Length = 1226 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 480 cgaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||||||| ||||||||||| Sbjct: 693 cgaggaggatgaagaggatgaggaagaggagga 725
>ref|XM_345376.2| PREDICTED: Rattus norvegicus similar to putative protein kinase (LOC366086), mRNA Length = 1410 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 480 cgaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||||||| ||||||||||| Sbjct: 1335 cgaggaggatgaagaggatgaggaagaggagga 1367
>ref|XM_574476.1| PREDICTED: Rattus norvegicus similar to Hmgb1 protein (LOC499183), mRNA Length = 2295 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 480 cgaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||||||| ||||||||||| Sbjct: 702 cgaggaggatgaagaggatgaggaagaggagga 734
>ref|XM_574383.1| PREDICTED: Rattus norvegicus similar to High mobility group protein 1 (HMG-1) (Amphoterin) (Heparin-binding protein p30) (LOC499092), mRNA Length = 1269 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 480 cgaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||||||| ||||||||||| Sbjct: 671 cgaggaggatgaagaggatgaggaagaggagga 703
>gb|AC157914.4| Mus musculus chromosome 19, clone RP24-284E14, complete sequence Length = 166967 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 480 cgaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||||||| ||||||||||| Sbjct: 155782 cgaggaggatgaagaggatgaggaagaggagga 155814
>gb|AF275734.1|AF275734 Rattus norvegicus amphoterin mRNA, complete cds Length = 1245 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 480 cgaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||||||| ||||||||||| Sbjct: 659 cgaggaggatgaagaggatgaggaagaggagga 691
>gb|AY631855.1| Dictyostelium discoideum nucleomorphin B (numB) mRNA, complete cds Length = 2318 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 490 gaagaggatgaagaagaggaggagg 514 ||||||||||||||||||||||||| Sbjct: 1654 gaagaggatgaagaagaggaggagg 1678
>ref|NG_005431.1| Mus musculus high mobility group protein 1-like (LOC433238) pseudogene on chromosome 19 Length = 1463 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 480 cgaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||||||| ||||||||||| Sbjct: 789 cgaggaggatgaagaggatgaggaagaggagga 821
>emb|Y00463.1|RNHMG1 Rat mRNA for high mobility group protein HMG1 Length = 825 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 480 cgaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||||||| ||||||||||| Sbjct: 597 cgaggaggatgaagaggatgaggaagaggagga 629
>gb|AC131739.3| Mus musculus BAC clone RP23-97B15 from 13, complete sequence Length = 241046 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggaggagg 514 ||||||||||||||||||||||||| Sbjct: 181104 gaagaggatgaagaagaggaggagg 181080
>gb|BC088402.1| Rattus norvegicus high mobility group box 1, mRNA (cDNA clone MGC:93598 IMAGE:7128547), complete cds Length = 1361 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 480 cgaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||||||| ||||||||||| Sbjct: 703 cgaggaggatgaagaggatgaggaagaggagga 735
>ref|NM_012963.2| Rattus norvegicus high mobility group box 1 (Hmgb1), mRNA Length = 2256 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 480 cgaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||||||| ||||||||||| Sbjct: 627 cgaggaggatgaagaggatgaggaagaggagga 659
>gb|M63852.1|SYNHMG1 Rat high mobility group 1 protein synthetic gene, complete cds Length = 924 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 480 cgaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||||||| ||||||||||| Sbjct: 658 cgaggaggatgaagaggatgaggaagaggagga 690
>gb|M19359.1|RATCRYG Rat gamma-crystallin gene cluster, encoding gamma-A (gamma 1-1), gamma-B (gamma 1-2), gamma-C (gamma 2-1), gamma-D (gamma 2-2), and gamma-E (gamma 3-1) crystallins, complete cds Length = 54670 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggag 513 |||||||| |||||||| ||||||||||||||| Sbjct: 48731 gaggagggagaagaggaggaagaagaggaggag 48699
>gb|M64986.1|RATAMPHO Rat amphoterin mRNA, complete cds Length = 1225 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 480 cgaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||||||| ||||||||||| Sbjct: 692 cgaggaggatgaagaggatgaggaagaggagga 724
>ref|XM_633380.1| Dictyostelium discoideum hypothetical protein (DDB0186138), partial mRNA Length = 1221 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 489 tgaagaggatgaagaagaggagga 512 |||||||||||||||||||||||| Sbjct: 1149 tgaagaggatgaagaagaggagga 1172
>gb|AC107704.8| Mus musculus chromosome 7, clone RP24-121L4, complete sequence Length = 194458 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 16763 gaggaggatgaagaggatgaggaagaggagga 16794
>gb|BC083067.1| Mus musculus high mobility group box 1, mRNA (cDNA clone MGC:103168 IMAGE:5372544), complete cds Length = 1252 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 646 gaggaggatgaagaggatgaggaagaggagga 677
>gb|BC085090.1| Mus musculus high mobility group box 1, mRNA (cDNA clone MGC:103169 IMAGE:6485915), complete cds Length = 1283 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 679 gaggaggatgaagaggatgaggaagaggagga 710
>gb|AC113177.16| Mus musculus chromosome 15, clone RP23-447G7, complete sequence Length = 179268 Score = 48.1 bits (24), Expect = 0.035 Identities = 33/36 (91%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggaggagggg 516 |||||||| || ||||| |||||||||||||||||| Sbjct: 120852 gaggagggggaggaggaggaagaagaggaggagggg 120887
>gb|AC166357.3| Mus musculus BAC clone RP23-360N1 from chromosome 7, complete sequence Length = 220916 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||| |||||||||||||| Sbjct: 188765 gaggagggggaagaggaggaagaagaggagga 188734
>gb|AC136923.6| Mus musculus chromosome 18, clone RP24-331G12, complete sequence Length = 177390 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||| |||||||||||||| Sbjct: 8512 gaggagggggaagaggacgaagaagaggagga 8481
>gb|AC102714.16| Mus musculus chromosome 5, clone RP24-298D13, complete sequence Length = 165774 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 108592 gaggaggatgaagaggatgaggaagaggagga 108561
>gb|AC139062.10| Mus musculus chromosome 17, clone RP23-69L11, complete sequence Length = 136224 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| ||||||||||||||||||||||| Sbjct: 14604 gaggaggaagaagaggatgaagaagaggagga 14635 Score = 40.1 bits (20), Expect = 8.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggaggagggg 516 ||||||| ||||| || |||||||||||||||||| Sbjct: 14649 gaggaggaagaagaagaagaagaagaggaggagggg 14684
>gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, complete sequence Length = 256158 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 134327 gaggaggatgaagaggatgaggaagaggagga 134358
>ref|NM_010439.2| Mus musculus high mobility group box 1 (Hmgb1), mRNA Length = 2309 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 724 gaggaggatgaagaggatgaggaagaggagga 755
>gb|AC120006.12| Mus musculus chromosome 19, clone RP24-176M2, complete sequence Length = 181007 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 160485 gaggaggatgaagaggatgaggaagaggagga 160454
>ref|NG_005439.2| Mus musculus high mobility group protein 1-like (LOC629372) pseudogene on chromosome 19 Length = 1439 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 773 gaggaggatgaagaggatgaggaagaggagga 804
>ref|NG_005430.2| Mus musculus high mobility group box 1 (Hmgb1) pseudogene (LOC654442) on chromosome 11 Length = 836 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 668 gaggaggatgaagaggatgaggaagaggagga 699
>gb|AC135509.2| Mus musculus BAC clone RP24-448I12 from chromosome 17, complete sequence Length = 141307 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 130445 gaggaggatgaagaggatgaggaagaggagga 130414
>ref|NM_020090.1| Rattus norvegicus solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 (Slc24a1), mRNA Length = 3550 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| ||||||||||||||| |||||||| Sbjct: 2864 gaggaggatgaagaggatgaagaggaggagga 2895
>ref|XM_451900.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B08305g predicted mRNA Length = 2208 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| ||||||||||||||||||||||| Sbjct: 1492 gaggaggaagaagaggatgaagaagaggagga 1523
>ref|XM_001005031.1| PREDICTED: Mus musculus similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) (LOC677578), mRNA Length = 1451 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 679 gaggaggatgaagaggatgaggaagaggagga 710
>ref|XM_982299.1| PREDICTED: Mus musculus similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) (LOC385454), mRNA Length = 570 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 511 gaggaggatgaagaggatgaggaagaggagga 542
>ref|XM_358238.5| PREDICTED: Mus musculus similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) (LOC385454), mRNA Length = 567 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 508 gaggaggatgaagaggatgaggaagaggagga 539
>ref|XM_910188.2| PREDICTED: Mus musculus similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) (LOC385454), mRNA Length = 567 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 508 gaggaggatgaagaggatgaggaagaggagga 539
>ref|XR_003222.1| PREDICTED: Mus musculus similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) (LOC640060), mRNA Length = 1293 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 722 gaggaggatgaagaggatgaggaagaggagga 753
>ref|XM_884320.2| PREDICTED: Mus musculus similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) (LOC619937), mRNA Length = 1267 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 677 gaggaggatgaagaggatgaggaagaggagga 708
>ref|XM_914398.2| PREDICTED: Mus musculus similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) (LOC638385), mRNA Length = 1260 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 670 gaggaggatgaagaggatgaggaagaggagga 701
>ref|XM_977875.1| PREDICTED: Mus musculus similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) (LOC669902), mRNA Length = 1269 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 678 gaggaggatgaagaggatgaggaagaggagga 709
>ref|XM_976550.1| PREDICTED: Mus musculus similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) (LOC669692), mRNA Length = 2060 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 679 gaggaggatgaagaggatgaggaagaggagga 710
>ref|XR_003080.1| PREDICTED: Mus musculus similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) (LOC619909), mRNA Length = 635 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| | |||||||||||||||||||||| Sbjct: 573 gaggaggataaagaggatgaagaagaggagga 604
>ref|XR_004825.1| PREDICTED: Mus musculus similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) (LOC619909), mRNA Length = 635 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| | |||||||||||||||||||||| Sbjct: 573 gaggaggataaagaggatgaagaagaggagga 604
>ref|XR_003871.1| PREDICTED: Mus musculus similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) (LOC623634), mRNA Length = 835 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 758 gaggaggatgaagaggatgaggaagaggagga 789
>gb|BC064790.1| Mus musculus high mobility group box 1, mRNA (cDNA clone MGC:76709 IMAGE:30019980), complete cds Length = 1612 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 1008 gaggaggatgaagaggatgaggaagaggagga 1039
>gb|AC132093.3| Mus musculus BAC clone RP24-506H13 from chromosome 10, complete sequence Length = 148364 Score = 48.1 bits (24), Expect = 0.035 Identities = 33/36 (91%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggagggg 516 ||||||| |||||||| |||||||||||||||||| Sbjct: 73286 gaggaggaggaagaggaagaagaagaggaggagggg 73251
>gb|AC137749.11| Mus musculus chromosome 6, clone RP23-69C16, complete sequence Length = 293695 Score = 48.1 bits (24), Expect = 0.035 Identities = 33/36 (91%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggagggg 516 ||||||| |||||||| |||||||||||||||||| Sbjct: 138861 gaggaggaagaagaggaggaagaagaggaggagggg 138826
>gb|AC129592.5| Mus musculus BAC clone RP24-86A6 from chromosome 3, complete sequence Length = 186218 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 485 agggtgaagaggatgaagaagaggaggagggg 516 ||||||||||||| ||||| |||||||||||| Sbjct: 84520 agggtgaagaggaggaagaggaggaggagggg 84489
>gb|AC124394.4| Mus musculus BAC clone RP24-335M3 from chromosome 19, complete sequence Length = 171122 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 87993 gaggaggatgaagaggatgaggaagaggagga 88024
>gb|AC098736.4| Mus musculus BAC clone RP23-122B3 from 1, complete sequence Length = 211208 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 25182 gaggaggatgaagaggatgaggaagaggagga 25213
>emb|BX571713.11| Zebrafish DNA sequence from clone DKEY-19H21 in linkage group 9, complete sequence Length = 103882 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagagg 508 ||||||||||||||||| |||||||||| Sbjct: 29589 gaggagggtgaagaggaagaagaagagg 29616
>ref|XM_719825.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04596) partial mRNA Length = 3090 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||| ||||||||||||||||| Sbjct: 1795 gaggaggatgaagaagatgaagaagaggagga 1826
>emb|CR674345.2|CNS0FJAN Tetraodon nigroviridis full-length cDNA Length = 1153 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 |||||||||||||| ||||| ||||||||||| Sbjct: 562 gaggagggtgaagaagatgaggaagaggagga 593
>gb|AC036121.11| Mus musculus chromosome 6, clone RP23-158O9, complete sequence Length = 215685 Score = 48.1 bits (24), Expect = 0.035 Identities = 33/36 (91%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggagggg 516 ||||||| |||||||| |||||||||||||||||| Sbjct: 30364 gaggaggaagaagaggaggaagaagaggaggagggg 30329
>gb|AC158764.4| Mus musculus chromosome 1, clone RP24-248C2, complete sequence Length = 165228 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 74982 gaggaggatgaagaggatgaggaagaggagga 74951
>gb|AC161211.21| Mus musculus chromosome 7, clone RP23-74O12, complete sequence Length = 188863 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 176343 gaggaggatgaagaggatgaggaagaggagga 176374
>gb|AC161231.7| Mus musculus chromosome 5, clone RP24-241P24, complete sequence Length = 193682 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||| |||||||||||||| Sbjct: 68100 gaggagggggaagaggaggaagaagaggagga 68069
>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1320834 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| ||||||||||||||||||||||| Sbjct: 739458 gaggaggaagaagaggatgaagaagaggagga 739489
>emb|AL603889.5| Mouse DNA sequence from clone RP23-407M20 on chromosome 11, complete sequence Length = 145052 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 24882 gaggaggatgaagaggatgaggaagaggagga 24851
>gb|AC159330.9| Mus musculus 10 BAC RP23-91L18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 224664 Score = 48.1 bits (24), Expect = 0.035 Identities = 33/36 (91%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggagggg 516 ||||||| |||||||||| |||||||||||||||| Sbjct: 198648 gaggaggaggaagaggatgcagaagaggaggagggg 198613 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 154873 gaggaggatgaagaggatgaggaagaggagga 154842
>gb|AC153153.4| Mus musculus BAC clone RP23-79G18 from chromosome 13, complete sequence Length = 222383 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 217074 gaggaggatgaagaggatgaggaagaggagga 217043 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggaggag 513 |||||||| ||||||||||||||| Sbjct: 140399 gaagaggaggaagaagaggaggag 140376
>emb|AL954336.3| Mouse DNA sequence from clone RP23-223H19 on chromosome 11 Contains a high mobility group box 1 (Hmgb1) pseudogene, a novel gene and two CpG islands, complete sequence Length = 117391 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 35800 gaggaggatgaagaggatgaggaagaggagga 35831
>gb|BC006586.1| Mus musculus high mobility group box 1, mRNA (cDNA clone MGC:8044 IMAGE:3587109), complete cds Length = 1266 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 660 gaggaggatgaagaggatgaggaagaggagga 691
>gb|AC127343.3| Mus musculus BAC clone RP23-194I18 from chromosome 10, complete sequence Length = 198624 Score = 48.1 bits (24), Expect = 0.035 Identities = 33/36 (91%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggagggg 516 ||||||| |||||||||| |||||||||||||||| Sbjct: 111709 gaggaggaggaagaggatgcagaagaggaggagggg 111674 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 67936 gaggaggatgaagaggatgaggaagaggagga 67905
>gb|BC008565.1| Mus musculus high mobility group box 1, mRNA (cDNA clone MGC:8033 IMAGE:3586745), complete cds Length = 2333 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 698 gaggaggatgaagaggatgaggaagaggagga 729
>dbj|AK144428.1| Mus musculus 21 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:G630066L18 product:high mobility group box 1, full insert sequence Length = 2816 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 699 gaggaggatgaagaggatgaggaagaggagga 730
>dbj|AK146420.1| Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched library, clone:I730085H08 product:high mobility group box 1, full insert sequence Length = 2252 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 669 gaggaggatgaagaggatgaggaagaggagga 700
>dbj|AK134228.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830495F02 product:high mobility group box 1, full insert sequence Length = 1047 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 461 gaggaggatgaagaggatgaggaagaggagga 492
>dbj|AK150924.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830018F21 product:high mobility group box 1, full insert sequence Length = 1316 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 727 gaggaggatgaagaggatgaggaagaggagga 758
>dbj|AK157846.1| Mus musculus erythroblast cDNA, RIKEN full-length enriched library, clone:K0C0023A12 product:high mobility group box 1, full insert sequence Length = 2309 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 724 gaggaggatgaagaggatgaggaagaggagga 755
>dbj|AK166007.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730029D20 product:high mobility group box 1, full insert sequence Length = 1264 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 678 gaggaggatgaagaggatgaggaagaggagga 709
>dbj|AK084841.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched library, clone:D330050N16 product:high mobility group box 1, full insert sequence Length = 2309 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 724 gaggaggatgaagaggatgaggaagaggagga 755
>dbj|AK051800.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130095O09 product:high mobility group box 1, full insert sequence Length = 1235 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 649 gaggaggatgaagaggatgaggaagaggagga 680
>dbj|AK087949.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430001G07 product:high mobility group box 1, full insert sequence Length = 1274 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 692 gaggaggatgaagaggatgaggaagaggagga 723
>dbj|AK037928.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130064K11 product:high mobility group box 1, full insert sequence Length = 928 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 758 gaggaggatgaagaggatgaggaagaggagga 789
>gb|AC158782.5| Mus musculus chromosome 5, clone RP23-134H19, complete sequence Length = 228458 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 207732 gaggaggatgaagaggatgaggaagaggagga 207701
>dbj|AK033880.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330109A19 product:unclassifiable, full insert sequence Length = 3445 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 1374 gaggaggatgaagaggatgaggaagaggagga 1343
>gb|AC126599.10| Mus musculus chromosome 3, clone RP24-487F9, complete sequence Length = 186281 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 143758 gaggaggatgaagaggatgaggaagaggagga 143727
>gb|AC121140.7| Mus musculus chromosome 8, clone RP23-429G12, complete sequence Length = 201440 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 170540 gaggaggatgaagaggatgaggaagaggagga 170509
>gb|AC154685.2| Mus musculus BAC clone RP24-321G16 from chromosome 17, complete sequence Length = 162362 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| ||||||||||||||||||||||| Sbjct: 19134 gaggaggaagaagaggatgaagaagaggagga 19103 Score = 40.1 bits (20), Expect = 8.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggagggg 516 ||||||| ||||| || |||||||||||||||||| Sbjct: 19089 gaggaggaagaagaagaagaagaagaggaggagggg 19054
>gb|AC134985.11| Mus musculus chromosome 5, clone RP24-432L3, complete sequence Length = 199782 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||| |||||||||||||| Sbjct: 128679 gaggagggggaagaggaggaagaagaggagga 128648
>gb|AC146595.2| Mus musculus BAC clone RP24-164G18 from chromosome 17, complete sequence Length = 132103 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 8795 gaggaggatgaagaggatgaggaagaggagga 8764
>gb|AF176688.1|AF176688 Rattus norvegicus sodium/calcium/potassium exchanger NCKX1 (SLC24A1) mRNA, complete cds Length = 3550 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| ||||||||||||||| |||||||| Sbjct: 2864 gaggaggatgaagaggatgaagaggaggagga 2895
>gb|AC131177.9| Mus musculus chromosome 1, clone RP23-374I10, complete sequence Length = 189761 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 137039 gaggaggatgaagaggatgaggaagaggagga 137008
>gb|BC091741.1| Mus musculus high mobility group box 1, mRNA (cDNA clone MGC:103167 IMAGE:4987137), complete cds Length = 867 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 683 gaggaggatgaagaggatgaggaagaggagga 714
>emb|AL831780.12| Mouse DNA sequence from clone RP23-394B8 on chromosome 2, complete sequence Length = 173444 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 69824 gaggaggatgaagaggatgaggaagaggagga 69793
>gb|AY836649.1| Uncultured bacterium clone BD8802 pectate lyase gene, complete cds Length = 1101 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 242 agctgcgccagcgcgcccttgccc 265 |||||||||||||||||||||||| Sbjct: 497 agctgcgccagcgcgcccttgccc 474
>gb|AC122736.13| Mus musculus chromosome 7, clone RP23-272F2, complete sequence Length = 226595 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| | |||||||||||||||||||||| Sbjct: 183521 gaggaggataaagaggatgaagaagaggagga 183490
>emb|Y00365.1|CHHMG1 Chinese hamster HMG-1 gene for high mobility group protein 1 Length = 2058 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 466 gaggaggatgaagaggatgaggaagaggagga 497
>emb|X80457.1|MMHMG1 M.musculus HMG1 gene Length = 2547 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 2099 gaggaggatgaagaggatgaggaagaggagga 2130
>gb|DQ176000.1| Xenopus laevis RPGR ORF15 isoform mRNA, partial cds Length = 1845 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 492 agaggatgaagaagaggaggaggg 515 |||||||||||||||||||||||| Sbjct: 1224 agaggatgaagaagaggaggaggg 1247 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 492 agaggatgaagaagaggaggaggg 515 |||||||||||||||||||||||| Sbjct: 1152 agaggatgaagaagaggaggaggg 1175 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 492 agaggatgaagaagaggaggaggg 515 |||||||||||||||||||||||| Sbjct: 1128 agaggatgaagaagaggaggaggg 1151 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 492 agaggatgaagaagaggaggaggg 515 |||||||||||||||||||||||| Sbjct: 930 agaggatgaagaagaggaggaggg 953 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| || ||||||||||||||||||||| Sbjct: 871 gaggaggatggagaggatgaagaagaggagga 902 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 492 agaggatgaagaagaggagga 512 ||||||||||||||||||||| Sbjct: 1176 agaggatgaagaagaggagga 1196 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| ||| || ||||||||||||||||| Sbjct: 1462 gaggaggatgaggatgatgaagaagaggagga 1493 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 |||||||| || || ||||||||||||||||| Sbjct: 1438 gaggagggagaggatgatgaagaagaggagga 1469 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 492 agaggatgaagaagaggaggaggg 515 ||||||||||||||| |||||||| Sbjct: 1272 agaggatgaagaagaagaggaggg 1295 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 492 agaggatgaagaagaggaggaggg 515 |||||| ||||||||||||||||| Sbjct: 1248 agaggaggaagaagaggaggaggg 1271 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 gatgaagaagaggaggaggg 515 |||||||||||||||||||| Sbjct: 1108 gatgaagaagaggaggaggg 1127 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 gatgaagaagaggaggaggg 515 |||||||||||||||||||| Sbjct: 1084 gatgaagaagaggaggaggg 1103 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 gatgaagaagaggaggaggg 515 |||||||||||||||||||| Sbjct: 1060 gatgaagaagaggaggaggg 1079 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 492 agaggatgaagaagaggaggaggg 515 |||||||||||||||| ||||||| Sbjct: 1002 agaggatgaagaagagcaggaggg 1025 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 492 agaggatgaagaagaggaggaggg 515 ||||||||||||||| |||||||| Sbjct: 978 agaggatgaagaagaagaggaggg 1001 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 492 agaggatgaagaagaggaggaggg 515 |||||| ||||||||||||||||| Sbjct: 954 agaggaggaagaagaggaggaggg 977 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 492 agaggatgaagaagaggaggaggg 515 |||||| ||||||||||||||||| Sbjct: 711 agaggacgaagaagaggaggaggg 734
>gb|BC111468.1| Mus musculus high mobility group box 1, mRNA (cDNA clone MGC:117896 IMAGE:4215684), complete cds Length = 2258 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 649 gaggaggatgaagaggatgaggaagaggagga 680
>gb|BC110667.1| Mus musculus high mobility group box 1, mRNA (cDNA clone MGC:117897 IMAGE:5036554), complete cds Length = 1731 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 1135 gaggaggatgaagaggatgaggaagaggagga 1166
>dbj|AP003152.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-356B22, complete sequences Length = 190116 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 493 gaggatgaagaagaggaggagggg 516 |||||||||||||||||||||||| Sbjct: 135553 gaggatgaagaagaggaggagggg 135530
>gb|AC140358.2| Mus musculus BAC clone RP24-234L7 from 3, complete sequence Length = 160295 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 485 agggtgaagaggatgaagaagaggaggagggg 516 ||||||||||||| ||||| |||||||||||| Sbjct: 137222 agggtgaagaggaggaagaggaggaggagggg 137191
>gb|BC100312.1| Mus musculus high mobility group box 1, mRNA (cDNA clone MGC:117529 IMAGE:30849071), complete cds Length = 1325 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 701 gaggaggatgaagaggatgaggaagaggagga 732
>gb|BC094030.1| Mus musculus high mobility group box 1, mRNA (cDNA clone MGC:103166 IMAGE:4952464), complete cds Length = 1346 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 713 gaggaggatgaagaggatgaggaagaggagga 744
>gb|AC112266.6| Mus musculus BAC clone RP23-422B6 from 13, complete sequence Length = 190943 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 161479 gaggaggatgaagaggatgaggaagaggagga 161448 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggaggag 513 |||||||| ||||||||||||||| Sbjct: 84804 gaagaggaggaagaagaggaggag 84781
>gb|AC165153.2| Mus musculus BAC clone RP23-359L1 from chromosome 17, complete sequence Length = 219548 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| ||||||||||||||||||||||| Sbjct: 155188 gaggaggaagaagaggatgaagaagaggagga 155157 Score = 40.1 bits (20), Expect = 8.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggagggg 516 ||||||| ||||| || |||||||||||||||||| Sbjct: 155143 gaggaggaagaagaagaagaagaagaggaggagggg 155108
>gb|AC171210.1| Mus musculus BAC clone RP23-36D15 from chromosome 7, complete sequence Length = 221010 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 |||||||| |||||||| |||||||||||||| Sbjct: 95204 gaggagggggaagaggaggaagaagaggagga 95173
>gb|AC165248.2| Mus musculus BAC clone RP24-219D2 from chromosome 16, complete sequence Length = 190373 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 493 gaggatgaagaagaggaggagggg 516 |||||||||||||||||||||||| Sbjct: 74649 gaggatgaagaagaggaggagggg 74672
>gb|AC154809.2| Mus musculus BAC clone RP24-528G7 from chromosome 16, complete sequence Length = 191524 Score = 48.1 bits (24), Expect = 0.035 Identities = 33/36 (91%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggaggagggg 516 ||||||| ||| ||||||||||| |||||||||||| Sbjct: 108112 gaggaggatgaggaggatgaagaggaggaggagggg 108147
>emb|AL845504.8| Mouse DNA sequence from clone RP23-297M18 on chromosome 2, complete sequence Length = 160295 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 81345 gaggaggatgaagaggatgaggaagaggagga 81314
>emb|AL672293.14| Mouse DNA sequence from clone RP23-180D16 on chromosome X, complete sequence Length = 177087 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 32115 gaggaggatgaagaggatgaggaagaggagga 32084
>gb|L38477.1|MUSHMG1HOM Mus musculus (clone Clebp-1) high mobility group 1 protein (HMG-1) mRNA, complete cds Length = 1225 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 644 gaggaggatgaagaggatgaggaagaggagga 675
>emb|Z11997.1|MMNHCHMG1 M.musculus mRNA for non-histone chromosomal high-mobility group 1 protein Length = 2231 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 643 gaggaggatgaagaggatgaggaagaggagga 674
>emb|AL928680.5| Mouse DNA sequence from clone RP23-396N6 on chromosome 2, complete sequence Length = 217726 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| ||||||||| |||||||||||||| Sbjct: 93195 gaggaggatgaagaggaggaagaagaggagga 93226
>gb|AC121505.14| Mus musculus chromosome 8, clone RP24-144M14, complete sequence Length = 163953 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 21905 gaggaggatgaagaggatgaggaagaggagga 21874
>gb|AC170753.7| Mus musculus BAC RP24-547D11 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 234156 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 186513 gaggaggatgaagaggatgacgaagaggagga 186482
>gb|U00431.1|U00431 Mus musculus HMG-1 mRNA, complete cds Length = 1308 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagga 512 ||||||| |||||||||||| ||||||||||| Sbjct: 716 gaggaggatgaagaggatgaggaagaggagga 747
>ref|NM_103552.2| Arabidopsis thaliana NPQ4 (NONPHOTOCHEMICAL QUENCHING) AT1G44575 (NPQ4) transcript variant AT1G44575.1 mRNA, complete cds Length = 1027 Score = 46.1 bits (23), Expect = 0.14 Identities = 179/231 (77%) Strand = Plus / Minus Query: 328 ctcgttcgacttggtgaacccgaacagcggacctccctcgctgaggccgagggctgagcg 387 |||||||| ||| |||||||| |||| |||||| || |||| |||||||| || || Sbjct: 627 ctcgttcgccttcgtgaacccaaacaatggaccttgttctttgagaccgagggcagatcg 568 Query: 388 gaagcctttgccgggggcgatgacggccttgtcgaggccggtgggctgctcgtcgacgaa 447 || | ||||||||| | |||||||| || ||||| |||||||| | ||||||||||| Sbjct: 567 gacgtttttgccgggaggaatgacggctttctcgagcccggtgggaggatcgtcgacgaa 508 Query: 448 cctgccgcggtctccgagcgcgccgatggcgccgaggagggtgaagaggatgaagaagag 507 | || | ||||||||| || || ||||| || | || ||||| | |||||||||||| Sbjct: 507 ttttcctctgtctccgagagctccaatggctcccaacagagtgaacaagatgaagaagag 448 Query: 508 gaggaggggctccgcctcgtagatcgggatgccggtctcaaggttcagctg 558 || | ||||| || ||||| ||||| || || ||||| || |||||||| Sbjct: 447 aagcaatggctctgcttcgtaaatcggtatccctgtctccagattcagctg 397
>gb|AC168212.7| Mus musculus chromosome 18, clone RP23-290N19, complete sequence Length = 197719 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggagga 512 ||||||||||||||||||||||| Sbjct: 170515 gaagaggatgaagaagaggagga 170493
>ref|XM_629830.1| Dictyostelium discoideum hypothetical protein (DDB0184227), partial mRNA Length = 933 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 487 ggtgaagaggatgaagaagagga 509 ||||||||||||||||||||||| Sbjct: 31 ggtgaagaggatgaagaagagga 53
>ref|XM_511962.1| PREDICTED: Pan troglodytes LOC455219 (LOC455219), mRNA Length = 2259 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 488 gtgaagaggatgaagaagaggaggagg 514 |||||||||| |||||||||||||||| Sbjct: 629 gtgaagaggaggaagaagaggaggagg 655
>gb|AC165426.3| Mus musculus BAC clone RP23-157G2 from chromosome 5, complete sequence Length = 245594 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 493 gaggatgaagaagaggaggaggg 515 ||||||||||||||||||||||| Sbjct: 58426 gaggatgaagaagaggaggaggg 58404 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 493 gaggatgaagaagaggaggagg 514 |||||||||||||||||||||| Sbjct: 58335 gaggatgaagaagaggaggagg 58314 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 493 gaggatgaagaagaggaggagggg 516 ||||| |||||||||||||||||| Sbjct: 58476 gaggaggaagaagaggaggagggg 58453
>ref|XM_516261.1| PREDICTED: Pan troglodytes similar to hypothetical protein (LOC460151), mRNA Length = 3756 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 484 gagggtgaagaggatgaagaagaggaggagg 514 |||||||| ||||||||||| |||||||||| Sbjct: 1795 gagggtgaggaggatgaagatgaggaggagg 1825
>gb|AC167405.5| Mus musculus chromosome 18, clone wi1-977A17, complete sequence Length = 41204 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 490 gaagaggatgaagaagaggagga 512 ||||||||||||||||||||||| Sbjct: 32215 gaagaggatgaagaagaggagga 32237
>gb|AY752997.1| Penaeus monodon clone ct108 microsatellite sequence Length = 679 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 492 agaggatgaagaagaggaggagg 514 ||||||||||||||||||||||| Sbjct: 369 agaggatgaagaagaggaggagg 347
>gb|AC131980.9| Mus musculus chromosome 1, clone RP24-170O7, complete sequence Length = 200100 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggaggaggg 515 |||||||||||| || | ||||||||||||||||| Sbjct: 116216 gaggagggtgaaaagaaggaagaagaggaggaggg 116250
>gb|AC102509.6| Mus musculus chromosome 7, clone RP24-327G7, complete sequence Length = 186990 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 482 aggagggtgaagaggatgaagaagaggagga 512 |||||| |||||||||||| ||||||||||| Sbjct: 37836 aggaggatgaagaggatgaggaagaggagga 37806
>ref|NM_003412.3| Homo sapiens Zic family member 1 (odd-paired homolog, Drosophila) (ZIC1), mRNA Length = 5231 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggaggg 515 ||||||| |||||||| ||||||||||||||||| Sbjct: 630 gaggaggaggaagaggaggaagaagaggaggaggg 596
>gb|AC141888.4| Mus musculus BAC clone RP23-462H3 from chromosome 19, complete sequence Length = 185192 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggagg 511 |||||||| |||||||| ||||||||||||| Sbjct: 139883 gaggagggagaagaggaggaagaagaggagg 139913
>gb|AC142406.2| Mus musculus BAC clone RP24-531P16 from chromosome 9, complete sequence Length = 169938 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggaggaggg 515 |||||||| || ||||| ||||||||||||||||| Sbjct: 38304 gaggagggagaggaggaggaagaagaggaggaggg 38338
>ref|NM_015670.3| Homo sapiens SUMO1/sentrin/SMT3 specific peptidase 3 (SENP3), mRNA Length = 2425 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 488 gtgaagaggatgaagaagaggaggagg 514 |||||||||| |||||||||||||||| Sbjct: 489 gtgaagaggaggaagaagaggaggagg 515
>ref|NM_004634.2| Homo sapiens bromodomain and PHD finger containing, 1 (BRPF1), transcript variant 2, mRNA Length = 4710 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 484 gagggtgaagaggatgaagaagaggaggagg 514 |||||||| ||||||||||| |||||||||| Sbjct: 1786 gagggtgaggaggatgaagatgaggaggagg 1816
>ref|NM_001003694.1| Homo sapiens bromodomain and PHD finger containing, 1 (BRPF1), transcript variant 1, mRNA Length = 4728 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 484 gagggtgaagaggatgaagaagaggaggagg 514 |||||||| ||||||||||| |||||||||| Sbjct: 1786 gagggtgaggaggatgaagatgaggaggagg 1816
>gb|AC167023.2| Mus musculus BAC clone RP23-21J7 from chromosome 7, complete sequence Length = 214762 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 491 aagaggatgaagaagaggaggag 513 ||||||||||||||||||||||| Sbjct: 62610 aagaggatgaagaagaggaggag 62588
>gb|BC080658.1| Homo sapiens SUMO1/sentrin/SMT3 specific peptidase 3, mRNA (cDNA clone MGC:90205 IMAGE:6155941), complete cds Length = 2425 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 488 gtgaagaggatgaagaagaggaggagg 514 |||||||||| |||||||||||||||| Sbjct: 489 gtgaagaggaggaagaagaggaggagg 515
>ref|XM_001001990.1| PREDICTED: Mus musculus similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) (LOC434174), mRNA Length = 1275 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 482 aggagggtgaagaggatgaagaagaggagga 512 |||||| |||||||||||| ||||||||||| Sbjct: 679 aggaggatgaagaggatgaggaagaggagga 709
>ref|XM_485920.3| PREDICTED: Mus musculus similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) (LOC434174), mRNA Length = 1275 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 482 aggagggtgaagaggatgaagaagaggagga 512 |||||| |||||||||||| ||||||||||| Sbjct: 679 aggaggatgaagaggatgaggaagaggagga 709
>ref|XM_916659.2| PREDICTED: Mus musculus similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) (LOC434174), mRNA Length = 1275 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 482 aggagggtgaagaggatgaagaagaggagga 512 |||||| |||||||||||| ||||||||||| Sbjct: 679 aggaggatgaagaggatgaggaagaggagga 709
>gb|AC126689.4| Mus musculus BAC clone RP23-166P10 from chromosome 8, complete sequence Length = 206377 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggaggaggg 515 |||||||| |||||||| ||||| ||||||||||| Sbjct: 73627 gaggagggagaagaggaggaagaggaggaggaggg 73661
>gb|BC032613.1| Homo sapiens cDNA clone IMAGE:5555330, **** WARNING: chimeric clone **** Length = 3530 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 488 gtgaagaggatgaagaagaggaggagg 514 |||||||||| |||||||||||||||| Sbjct: 25 gtgaagaggaggaagaagaggaggagg 51
>gb|AC123049.4| Mus musculus BAC clone RP24-360B3 from chromosome 5, complete sequence Length = 166292 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 493 gaggatgaagaagaggaggaggg 515 ||||||||||||||||||||||| Sbjct: 165170 gaggatgaagaagaggaggaggg 165148 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 493 gaggatgaagaagaggaggagg 514 |||||||||||||||||||||| Sbjct: 165079 gaggatgaagaagaggaggagg 165058 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 493 gaggatgaagaagaggaggagggg 516 ||||| |||||||||||||||||| Sbjct: 165220 gaggaggaagaagaggaggagggg 165197
>gb|AC132452.3| Mus musculus BAC clone RP23-195K10 from chromosome 19, complete sequence Length = 218688 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggaggg 515 ||||||| |||||||| ||||||||||||||||| Sbjct: 79736 gaggaggaggaagaggaggaagaagaggaggaggg 79702 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggaggagg 514 |||||||| |||||||||||||||| Sbjct: 79751 gaagaggaggaagaagaggaggagg 79727 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 491 aagaggatgaagaagaggaggagg 514 ||||||| |||||||||||||||| Sbjct: 79588 aagaggaggaagaagaggaggagg 79565
>gb|AC134603.4| Mus musculus BAC clone RP23-246L24 from chromosome 7, complete sequence Length = 229312 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggaggagggg 516 |||||||| |||||||||||||||||| Sbjct: 103499 gaagaggaagaagaagaggaggagggg 103473
>gb|AC122001.2| Mus musculus BAC clone RP24-330I1 from chromosome 7, complete sequence Length = 155051 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 491 aagaggatgaagaagaggaggag 513 ||||||||||||||||||||||| Sbjct: 106817 aagaggatgaagaagaggaggag 106795
>gb|AC122195.4| Mus musculus BAC clone RP23-49D1 from 8, complete sequence Length = 204335 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggaggg 515 |||||||| |||||||| ||||||||||| ||||| Sbjct: 134158 gaggagggggaagaggaggaagaagaggaagaggg 134124
>ref|NM_024133.2| Rattus norvegicus huntingtin-associated protein 1 (Hap1), transcript variant 1, mRNA Length = 3633 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggaggaggg 515 ||||||| |||||||||||| |||||||| ||||| Sbjct: 682 gaggaggatgaagaggatgaggaagaggaagaggg 716
>ref|NM_177982.1| Rattus norvegicus huntingtin-associated protein 1 (Hap1), transcript variant 2, mRNA Length = 3126 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggaggaggg 515 ||||||| |||||||||||| |||||||| ||||| Sbjct: 682 gaggaggatgaagaggatgaggaagaggaagaggg 716
>gb|AY211044.1| Tribolium castaneum strain cSM microsatellite sequence Length = 264 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 492 agaggatgaagaagaggaggagg 514 ||||||||||||||||||||||| Sbjct: 156 agaggatgaagaagaggaggagg 178
>gb|AC091783.9| Genomic sequence for Mus musculus, clone RP23-16G10, complete sequence Length = 228160 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 490 gaagaggatgaagaagaggagga 512 ||||||||||||||||||||||| Sbjct: 216042 gaagaggatgaagaagaggagga 216064
>gb|BC068262.1| Homo sapiens cDNA clone IMAGE:5272879, containing frame-shift errors Length = 4719 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 484 gagggtgaagaggatgaagaagaggaggagg 514 |||||||| ||||||||||| |||||||||| Sbjct: 1787 gagggtgaggaggatgaagatgaggaggagg 1817
>gb|AC115452.4| Rattus norvegicus 7 BAC CH230-309G3 (Children's Hospital Oakland Research Institute) complete sequence Length = 169133 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggaggagggg 516 |||||||| |||||||||||||||||| Sbjct: 78201 gaagaggaggaagaagaggaggagggg 78175
>ref|XM_967760.1| PREDICTED: Tribolium castaneum similar to Fms interacting protein (LOC661609), mRNA Length = 2118 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 492 agaggatgaagaagaggaggagg 514 ||||||||||||||||||||||| Sbjct: 961 agaggatgaagaagaggaggagg 983
>gb|AC162948.4| Mus musculus BAC clone RP23-14N2 from chromosome 9, complete sequence Length = 221791 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggaggg 515 |||||||| || ||||| ||||||||||||||||| Sbjct: 207787 gaggagggagaggaggaggaagaagaggaggaggg 207753
>emb|AL713696.1|HSM803056 Homo sapiens mRNA; cDNA DKFZp547C058 (from clone DKFZp547C058) Length = 4539 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 484 gagggtgaagaggatgaagaagaggaggagg 514 |||||||| ||||||||||| |||||||||| Sbjct: 1616 gagggtgaggaggatgaagatgaggaggagg 1646
>emb|AL834294.1|HSM805332 Homo sapiens mRNA; cDNA DKFZp762A152 (from clone DKFZp762A152) Length = 2269 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 488 gtgaagaggatgaagaagaggaggagg 514 |||||||||| |||||||||||||||| Sbjct: 301 gtgaagaggaggaagaagaggaggagg 327
>emb|CR626749.1| full-length cDNA clone CS0DK002YD13 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 2433 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 488 gtgaagaggatgaagaagaggaggagg 514 |||||||||| |||||||||||||||| Sbjct: 544 gtgaagaggaggaagaagaggaggagg 570
>gb|AC159710.9| Mus musculus 10 BAC RP24-325N16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 204302 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 491 aagaggatgaagaagaggaggag 513 ||||||||||||||||||||||| Sbjct: 75607 aagaggatgaagaagaggaggag 75629
>dbj|AK221702.1| Arabidopsis thaliana mRNA for Photosystem II chlorophyll-binding protein PsbS, complete cds, clone: RAFL15-46-K22 Length = 1048 Score = 46.1 bits (23), Expect = 0.14 Identities = 179/231 (77%) Strand = Plus / Minus Query: 328 ctcgttcgacttggtgaacccgaacagcggacctccctcgctgaggccgagggctgagcg 387 |||||||| ||| |||||||| |||| |||||| || |||| |||||||| || || Sbjct: 632 ctcgttcgccttcgtgaacccaaacaatggaccttgttctttgagaccgagggcagatcg 573 Query: 388 gaagcctttgccgggggcgatgacggccttgtcgaggccggtgggctgctcgtcgacgaa 447 || | ||||||||| | |||||||| || ||||| |||||||| | ||||||||||| Sbjct: 572 gacgtttttgccgggaggaatgacggctttctcgagcccggtgggaggatcgtcgacgaa 513 Query: 448 cctgccgcggtctccgagcgcgccgatggcgccgaggagggtgaagaggatgaagaagag 507 | || | ||||||||| || || ||||| || | || ||||| | |||||||||||| Sbjct: 512 ttttcctctgtctccgagagctccaatggctcccaacagagtgaacaagatgaagaagag 453 Query: 508 gaggaggggctccgcctcgtagatcgggatgccggtctcaaggttcagctg 558 || | ||||| || ||||| ||||| || || ||||| || |||||||| Sbjct: 452 aagcaatggctctgcttcgtaaatcggtatccctgtctccagattcagctg 402
>gb|AF410304.1|AF410304 Arabidopsis thaliana unknown protein mRNA, complete cds Length = 897 Score = 46.1 bits (23), Expect = 0.14 Identities = 179/231 (77%) Strand = Plus / Minus Query: 328 ctcgttcgacttggtgaacccgaacagcggacctccctcgctgaggccgagggctgagcg 387 |||||||| ||| |||||||| |||| |||||| || |||| |||||||| || || Sbjct: 589 ctcgttcgccttcgtgaacccaaacaatggaccttgttctttgagaccgagggcagatcg 530 Query: 388 gaagcctttgccgggggcgatgacggccttgtcgaggccggtgggctgctcgtcgacgaa 447 || | ||||||||| | |||||||| || ||||| |||||||| | ||||||||||| Sbjct: 529 gacgtttttgccgggaggaatgacggctttctcgagcccggtgggaggatcgtcgacgaa 470 Query: 448 cctgccgcggtctccgagcgcgccgatggcgccgaggagggtgaagaggatgaagaagag 507 | || | ||||||||| || || ||||| || | || ||||| | |||||||||||| Sbjct: 469 ttttcctctgtctccgagagctccaatggctcccaacagagtgaacaagatgaagaagag 410 Query: 508 gaggaggggctccgcctcgtagatcgggatgccggtctcaaggttcagctg 558 || | ||||| || ||||| ||||| || || ||||| || |||||||| Sbjct: 409 aagcaatggctctgcttcgtaaatcggtatccctgtctccagattcagctg 359
>gb|AC154636.2| Mus musculus BAC clone RP23-302E1 from chromosome 12, complete sequence Length = 179631 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggaggagggg 516 |||||||| |||||||||||||||||| Sbjct: 26598 gaagaggaagaagaagaggaggagggg 26572
>emb|BX814514.1|CNS0AC0P Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB78ZB06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 944 Score = 46.1 bits (23), Expect = 0.14 Identities = 179/231 (77%) Strand = Plus / Minus Query: 328 ctcgttcgacttggtgaacccgaacagcggacctccctcgctgaggccgagggctgagcg 387 |||||||| ||| |||||||| |||| |||||| || |||| |||||||| || || Sbjct: 618 ctcgttcgccttcgtgaacccaaacaatggaccttgttctttgagaccgagggcagatcg 559 Query: 388 gaagcctttgccgggggcgatgacggccttgtcgaggccggtgggctgctcgtcgacgaa 447 || | ||||||||| | |||||||| || ||||| |||||||| | ||||||||||| Sbjct: 558 gacgtttttgccgggaggaatgacggctttctcgagcccggtgggaggatcgtcgacgaa 499 Query: 448 cctgccgcggtctccgagcgcgccgatggcgccgaggagggtgaagaggatgaagaagag 507 | || | ||||||||| || || ||||| || | || ||||| | |||||||||||| Sbjct: 498 ttttcctctgtctccgagagctccaatggctcccaacagagtgaacaagatgaagaagag 439 Query: 508 gaggaggggctccgcctcgtagatcgggatgccggtctcaaggttcagctg 558 || | ||||| || ||||| ||||| || || ||||| || |||||||| Sbjct: 438 aagcaatggctctgcttcgtaaatcggtatccctgtctccagattcagctg 388
>emb|BX813807.1|CNS0AC07 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB40ZA03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 902 Score = 46.1 bits (23), Expect = 0.14 Identities = 179/231 (77%) Strand = Plus / Minus Query: 328 ctcgttcgacttggtgaacccgaacagcggacctccctcgctgaggccgagggctgagcg 387 |||||||| ||| |||||||| |||| |||||| || |||| |||||||| || || Sbjct: 576 ctcgttcgccttcgtgaacccaaacaatggaccttgttctttgagaccgagggcagatcg 517 Query: 388 gaagcctttgccgggggcgatgacggccttgtcgaggccggtgggctgctcgtcgacgaa 447 || | ||||||||| | |||||||| || ||||| |||||||| | ||||||||||| Sbjct: 516 gacgtttttgccgggaggtatgacggctttctcgagcccggtgggaggatcgtcgacgaa 457 Query: 448 cctgccgcggtctccgagcgcgccgatggcgccgaggagggtgaagaggatgaagaagag 507 | || | ||||||||| || || ||||| || | || ||||| | |||||||||||| Sbjct: 456 ttttcctctgtctccgagagctccaatggctcccaacagagtgaacaagatgaagaagag 397 Query: 508 gaggaggggctccgcctcgtagatcgggatgccggtctcaaggttcagctg 558 || | ||||| || ||||| ||||| || || ||||| || |||||||| Sbjct: 396 aagcaatggctctgcttcgtaaatcggtatccctgtctccagattcagctg 346
>dbj|AB071078.1| Macaca fascicularis testis cDNA clone:QtsA-16933, similar to human tripartite motif-containing 37 protein (TRIM37), mRNA, NM_001005207 Length = 2712 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 491 aagaggatgaagaagaggaggag 513 ||||||||||||||||||||||| Sbjct: 1009 aagaggatgaagaagaggaggag 1031
>gb|AC092959.6| Homo sapiens 3 BAC RP11-649A16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179714 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggaggaggg 515 ||||||| |||||||| ||||||||||||||||| Sbjct: 108726 gaggaggaggaagaggaggaagaagaggaggaggg 108760
>gb|AY008763.1| Homo sapiens sentrin/SUMO-specific protease (SENP3) mRNA, complete cds Length = 2224 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 488 gtgaagaggatgaagaagaggaggagg 514 |||||||||| |||||||||||||||| Sbjct: 275 gtgaagaggaggaagaagaggaggagg 301
>gb|AF134131.1| Arabidopsis thaliana PsbS protein (PsbS) mRNA, complete cds Length = 942 Score = 46.1 bits (23), Expect = 0.14 Identities = 179/231 (77%) Strand = Plus / Minus Query: 328 ctcgttcgacttggtgaacccgaacagcggacctccctcgctgaggccgagggctgagcg 387 |||||||| ||| |||||||| |||| |||||| || |||| |||||||| || || Sbjct: 622 ctcgttcgccttcgtgaacccaaacaatggaccttgttctttgagaccgagggcagatcg 563 Query: 388 gaagcctttgccgggggcgatgacggccttgtcgaggccggtgggctgctcgtcgacgaa 447 || | ||||||||| | |||||||| || ||||| |||||||| | ||||||||||| Sbjct: 562 gacgtttttgccgggaggaatgacggctttctcgagcccggtgggaggatcgtcgacgaa 503 Query: 448 cctgccgcggtctccgagcgcgccgatggcgccgaggagggtgaagaggatgaagaagag 507 | || | ||||||||| || || ||||| || | || ||||| | |||||||||||| Sbjct: 502 ttttcctctgtctccgagagctccaatggctcccaacagagtgaacaagatgaagaagag 443 Query: 508 gaggaggggctccgcctcgtagatcgggatgccggtctcaaggttcagctg 558 || | ||||| || ||||| ||||| || || ||||| || |||||||| Sbjct: 442 aagcaatggctctgcttcgtaaatcggtatccctgtctccagattcagctg 392
>ref|NM_001003618.1| Danio rerio zgc:100960 (zgc:100960), mRNA Length = 1330 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 490 gaagaggatgaagaagaggagga 512 ||||||||||||||||||||||| Sbjct: 386 gaagaggatgaagaagaggagga 408
>gb|AC153862.8| Mus musculus 10 BAC RP23-353K11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 223830 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 482 aggagggtgaagaggatgaagaagaggaggagggg 516 ||||||| || ||||||||||| |||||||||||| Sbjct: 103263 aggagggggaggaggatgaagaggaggaggagggg 103297
>gb|BT002251.1| Arabidopsis thaliana At1g44575/T18F15 mRNA, complete cds Length = 798 Score = 46.1 bits (23), Expect = 0.14 Identities = 179/231 (77%) Strand = Plus / Minus Query: 328 ctcgttcgacttggtgaacccgaacagcggacctccctcgctgaggccgagggctgagcg 387 |||||||| ||| |||||||| |||| |||||| || |||| |||||||| || || Sbjct: 582 ctcgttcgccttcgtgaacccaaacaatggaccttgttctttgagaccgagggcagatcg 523 Query: 388 gaagcctttgccgggggcgatgacggccttgtcgaggccggtgggctgctcgtcgacgaa 447 || | ||||||||| | |||||||| || ||||| |||||||| | ||||||||||| Sbjct: 522 gacgtttttgccgggaggaatgacggctttctcgagcccggtgggaggatcgtcgacgaa 463 Query: 448 cctgccgcggtctccgagcgcgccgatggcgccgaggagggtgaagaggatgaagaagag 507 | || | ||||||||| || || ||||| || | || ||||| | |||||||||||| Sbjct: 462 ttttcctctgtctccgagagctccaatggctcccaacagagtgaacaagatgaagaagag 403 Query: 508 gaggaggggctccgcctcgtagatcgggatgccggtctcaaggttcagctg 558 || | ||||| || ||||| ||||| || || ||||| || |||||||| Sbjct: 402 aagcaatggctctgcttcgtaaatcggtatccctgtctccagattcagctg 352
>gb|AF176815.1|AF176815 Homo sapiens putative 8-hydroxyguanine DNA glycosylase gene, complete cds Length = 51803 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 484 gagggtgaagaggatgaagaagaggaggagg 514 |||||||| ||||||||||| |||||||||| Sbjct: 31929 gagggtgaggaggatgaagatgaggaggagg 31959
>gb|BC078314.1| Danio rerio zgc:100960, mRNA (cDNA clone MGC:100960 IMAGE:7147354), complete cds Length = 1330 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 490 gaagaggatgaagaagaggagga 512 ||||||||||||||||||||||| Sbjct: 386 gaagaggatgaagaagaggagga 408
>gb|BC053851.1| Homo sapiens bromodomain and PHD finger containing, 1, transcript variant 1, mRNA (cDNA clone MGC:61492 IMAGE:6140996), complete cds Length = 4599 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 484 gagggtgaagaggatgaagaagaggaggagg 514 |||||||| ||||||||||| |||||||||| Sbjct: 1780 gagggtgaggaggatgaagatgaggaggagg 1810
>gb|AC154829.2| Mus musculus BAC clone RP24-550F10 from 14, complete sequence Length = 136754 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 490 gaagaggatgaagaagaggagga 512 ||||||||||||||||||||||| Sbjct: 135139 gaagaggatgaagaagaggagga 135161
>emb|Z71559.1|SCYNL283C S.cerevisiae chromosome XIV reading frame ORF YNL283c Length = 3584 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 490 gaagaggatgaagaagaggagga 512 ||||||||||||||||||||||| Sbjct: 2025 gaagaggatgaagaagaggagga 2047
>gb|DQ332622.1| Synthetic construct Saccharomyces cerevisiae clone FLH201648.01X WSC2 gene, complete sequence Length = 1512 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggagga 512 ||||||||||||||||||||||| Sbjct: 569 gaagaggatgaagaagaggagga 547
>gb|U38373.1|RNU38373 Rattus norvegicus huntingtin associated protein (rHAP1-A) mRNA, complete cds Length = 3708 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggaggaggg 515 ||||||| |||||||||||| |||||||| ||||| Sbjct: 697 gaggaggatgaagaggatgaggaagaggaagaggg 731
>gb|U38370.1|RNU38370 Rattus norvegicus huntingtin associated protein (rHAP1-B) mRNA, complete cds, alternatively spliced form Length = 3201 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggaggaggg 515 ||||||| |||||||||||| |||||||| ||||| Sbjct: 697 gaggaggatgaagaggatgaggaagaggaagaggg 731
>emb|CT572990.6| Mouse DNA sequence from clone RP24-393N9 on chromosome 12, complete sequence Length = 90243 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 490 gaagaggatgaagaagaggaggagggg 516 |||||||| |||||||||||||||||| Sbjct: 61651 gaagaggaagaagaagaggaggagggg 61677
>emb|AJ891053.1| Clethrionomys glareolus partial adrab2 gene for alpha 2B adrenergic receptor Length = 1173 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 489 tgaagaggatgaagaagaggagg 511 ||||||||||||||||||||||| Sbjct: 851 tgaagaggatgaagaagaggagg 873
>gb|AC131189.3| Mus musculus BAC clone RP24-330P2 from 8, complete sequence Length = 157757 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 490 gaagaggatgaagaagaggaggagggg 516 |||||||| |||||||||||||||||| Sbjct: 107249 gaagaggaggaagaagaggaggagggg 107275
>gb|BC036374.1| Homo sapiens cDNA clone IMAGE:4821313, containing frame-shift errors Length = 4589 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 484 gagggtgaagaggatgaagaagaggaggagg 514 |||||||| ||||||||||| |||||||||| Sbjct: 1792 gagggtgaggaggatgaagatgaggaggagg 1822
>gb|AC134606.4| Mus musculus BAC clone RP23-52K6 from 9, complete sequence Length = 171495 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggaggg 515 |||||||| || ||||| ||||||||||||||||| Sbjct: 7476 gaggagggagaggaggaggaagaagaggaggaggg 7442 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 494 aggatgaagaagaggaggaggg 515 |||||||||||||||||||||| Sbjct: 143276 aggatgaagaagaggaggaggg 143255
>gb|AC146603.3| Mus musculus BAC clone RP23-304P17 from 8, complete sequence Length = 167842 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 490 gaagaggatgaagaagaggaggagggg 516 |||||||| |||||||||||||||||| Sbjct: 53347 gaagaggaggaagaagaggaggagggg 53373
>emb|AL772342.12| Mouse DNA sequence from clone RP23-105D19 on chromosome 2, complete sequence Length = 206806 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 490 gaagaggatgaagaagaggaggagggg 516 |||||||| |||||||||||||||||| Sbjct: 59042 gaagaggaggaagaagaggaggagggg 59068
>gb|AC022382.4| Homo sapiens chromosome 3 clone RP11-266J6 map 3p, complete sequence Length = 185067 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 484 gagggtgaagaggatgaagaagaggaggagg 514 |||||||| ||||||||||| |||||||||| Sbjct: 95744 gagggtgaggaggatgaagatgaggaggagg 95714
>gb|M91585.1|HUMPRGRN Human Br140 mRNA, complete cds Length = 4320 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 484 gagggtgaagaggatgaagaagaggaggagg 514 |||||||| ||||||||||| |||||||||| Sbjct: 1415 gagggtgaggaggatgaagatgaggaggagg 1445
>gb|AF199459.1| Homo sapiens SUMO-1 specific protease 3 (SUSP3) mRNA, complete cds Length = 2258 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 488 gtgaagaggatgaagaagaggaggagg 514 |||||||||| |||||||||||||||| Sbjct: 294 gtgaagaggaggaagaagaggaggagg 320
>emb|AL670464.12| Mouse DNA sequence from clone RP23-12I24 on chromosome 4, complete sequence Length = 203558 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggaggaggg 515 ||||||| |||||||| ||||||||||||||||| Sbjct: 175247 gaggaggaagaagaggaggaagaagaggaggaggg 175281
>emb|AL772347.6| Mouse DNA sequence from clone RP23-160G19 on chromosome 2, complete sequence Length = 184583 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 490 gaagaggatgaagaagaggaggagggg 516 ||||| ||||||||||||||||||||| Sbjct: 19758 gaagaagatgaagaagaggaggagggg 19784
>emb|AL606498.17| Mouse DNA sequence from clone RP23-197C15 on chromosome 11, complete sequence Length = 222330 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggaggagggg 516 |||||||| |||||||||||||||||| Sbjct: 67837 gaagaggaggaagaagaggaggagggg 67811
>gb|AC016876.10| Homo sapiens chromosome 17, clone RP11-186B7, complete sequence Length = 60268 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 488 gtgaagaggatgaagaagaggaggagg 514 |||||||||| |||||||||||||||| Sbjct: 31074 gtgaagaggaggaagaagaggaggagg 31048
>dbj|D76435.1|HUMZICP Homo sapiens mRNA for Zic protein, complete cds Length = 3138 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggaggg 515 ||||||| |||||||| ||||||||||||||||| Sbjct: 691 gaggaggaggaagaggaggaagaagaggaggaggg 657
>ref|NM_202242.1| Arabidopsis thaliana NPQ4 (NONPHOTOCHEMICAL QUENCHING) AT1G44575 (NPQ4) transcript variant AT1G44575.2 mRNA, complete cds Length = 1486 Score = 44.1 bits (22), Expect = 0.55 Identities = 148/190 (77%) Strand = Plus / Minus Query: 369 tgaggccgagggctgagcggaagcctttgccgggggcgatgacggccttgtcgaggccgg 428 |||| |||||||| || |||| | ||||||||| | |||||||| || ||||| |||| Sbjct: 579 tgagaccgagggcagatcggacgtttttgccgggaggaatgacggctttctcgagcccgg 520 Query: 429 tgggctgctcgtcgacgaacctgccgcggtctccgagcgcgccgatggcgccgaggaggg 488 |||| | ||||||||||| | || | ||||||||| || || ||||| || | || | Sbjct: 519 tgggaggatcgtcgacgaattttcctctgtctccgagagctccaatggctcccaacagag 460 Query: 489 tgaagaggatgaagaagaggaggaggggctccgcctcgtagatcgggatgccggtctcaa 548 |||| | |||||||||||| || | ||||| || ||||| ||||| || || ||||| | Sbjct: 459 tgaacaagatgaagaagagaagcaatggctctgcttcgtaaatcggtatccctgtctcca 400 Query: 549 ggttcagctg 558 | |||||||| Sbjct: 399 gattcagctg 390
>gb|AC153630.1| Mus musculus 6 BAC RP23-289O16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 217496 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggagg 514 ||||||| |||||||| |||||||||||||||| Sbjct: 122595 gaggaggaggaagaggaggaagaagaggaggagg 122562
>gb|AC167537.7| Mus musculus chromosome 8, clone RP23-99B10, complete sequence Length = 201791 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggagg 514 |||||||| |||||||| || ||||||||||||| Sbjct: 16251 gaggagggggaagaggaagaggaagaggaggagg 16218
>gb|AC161271.2| Mus musculus BAC clone RP23-59D8 from chromosome 14, complete sequence Length = 206083 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggaggagg 514 ||||||| ||||||||||||||||| ||||||| Sbjct: 99830 gaggaggaagaagaggatgaagaagaagaggagg 99863
>gb|AC142244.11| Mus musculus chromosome 1, clone RP23-79H24, complete sequence Length = 132061 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggagg 514 ||||||| |||||||| |||||||||||||||| Sbjct: 128635 gaggaggaagaagaggaggaagaagaggaggagg 128602
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 292 ggcgatccccagctgcgccagccgcc 317 |||||| ||||||||||||||||||| Sbjct: 415584 ggcgatgcccagctgcgccagccgcc 415609
>gb|AC138265.9| Mus musculus chromosome 5, clone RP23-41J13, complete sequence Length = 172279 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggaggagg 514 ||||||| |||||||| |||||||||||||||| Sbjct: 143550 gaggaggaagaagaggaggaagaagaggaggagg 143583
>ref|NM_188668.1| Oryza sativa (japonica cultivar-group), Ozsa8271 predicted mRNA Length = 1176 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 493 gaggatgaagaagaggaggagg 514 |||||||||||||||||||||| Sbjct: 145 gaggatgaagaagaggaggagg 166
>ref|XM_630713.1| Dictyostelium discoideum structure-specific recognition protein 1 (DDB0216434), partial mRNA Length = 1584 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggaggagg 514 ||||||| ||||||||||| |||| ||||||||| Sbjct: 610 gaggaggatgaagaggatgcagaaaaggaggagg 643
>ref|XM_531426.1| PREDICTED: Pan troglodytes similar to Homo sapiens C21orf63 isoform B protein,variant1 (LOC473956), mRNA Length = 1471 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 493 gaggatgaagaagaggaggagg 514 |||||||||||||||||||||| Sbjct: 1037 gaggatgaagaagaggaggagg 1058
>gb|AC167972.3| Mus musculus BAC clone RP24-73H24 from chromosome 13, complete sequence Length = 224330 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggaggagg 514 |||||||| || ||||| |||||||||||||||| Sbjct: 55788 gaggagggagaggaggaggaagaagaggaggagg 55821 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggaggagg 514 |||||||| || ||||| |||||||||||||||| Sbjct: 55743 gaggagggagaggaggaggaagaagaggaggagg 55776
>ref|XM_509001.1| PREDICTED: Pan troglodytes kinesin family member 21A (LOC451832), mRNA Length = 3282 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 493 gaggatgaagaagaggaggagg 514 |||||||||||||||||||||| Sbjct: 277 gaggatgaagaagaggaggagg 298
>ref|NM_177977.1| Homo sapiens huntingtin-associated protein 1 (neuroan 1) (HAP1), transcript variant 2, mRNA Length = 3981 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 493 gaggatgaagaagaggaggagg 514 |||||||||||||||||||||| Sbjct: 800 gaggatgaagaagaggaggagg 821
>ref|NM_003949.2| Homo sapiens huntingtin-associated protein 1 (neuroan 1) (HAP1), transcript variant 1, mRNA Length = 4084 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 493 gaggatgaagaagaggaggagg 514 |||||||||||||||||||||| Sbjct: 800 gaggatgaagaagaggaggagg 821
>gb|AC153607.15| Mus musculus 6 BAC RP23-100I21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222828 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Minus Query: 481 gaggagggtgaagaggatgaagaagaggaggagg 514 ||||||| |||||||| |||||||||||||||| Sbjct: 43083 gaggaggaggaagaggaggaagaagaggaggagg 43050
>gb|BC054732.1| Mus musculus gametogenetin binding protein 1, mRNA (cDNA clone MGC:64749 IMAGE:5709552), complete cds Length = 5028 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Plus Query: 481 gaggagggtgaagaggatgaagaagaggaggagg 514 |||||||| |||| ||| |||||||||||||||| Sbjct: 3193 gaggagggggaaggggaggaagaagaggaggagg 3226
>gb|AE014842.1| Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence Length = 253151 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 169 gatgaagaagaagacgacgttgaaga 194 ||||||||||||| |||||||||||| Sbjct: 10622 gatgaagaagaagtcgacgttgaaga 10597
>gb|BC063247.1| Mus musculus zinc finger protein of the cerebellum 1, mRNA (cDNA clone MGC:62379 IMAGE:5694793), complete cds Length = 3087 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 490 gaagaggatgaagaagaggaggaggg 515 |||||||| ||||||||||||||||| Sbjct: 648 gaagaggaggaagaagaggaggaggg 623 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,307,890 Number of Sequences: 3902068 Number of extensions: 5307890 Number of successful extensions: 196435 Number of sequences better than 10.0: 1879 Number of HSP's better than 10.0 without gapping: 1871 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 184272 Number of HSP's gapped (non-prelim): 12012 length of query: 625 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 602 effective length of database: 17,143,297,704 effective search space: 10320265217808 effective search space used: 10320265217808 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
