ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal30m10 |
|---|---|
| Clone Library Name | barley_pub |
>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)| (Fertility restorer) (Restorer for CMS) Length = 791 Score = 47.4 bits (111), Expect = 4e-05 Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 5/112 (4%) Frame = -1 Query: 637 AEKIWKEMMRRKVQPDRVSYTAIVGAFNRSGELDRCMDYYQEFRETGGTVDKTLAGLMVG 458 +EK+++ M+R V+P+ ++Y ++ + +G++D M G + ++ Sbjct: 495 SEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLIN 554 Query: 457 VFCKTSRFNDLIQLLRDMKVQDTQLDRRLYMIVLNSLRE-----AGLEVHVR 317 +CK SR D + L ++M+ D Y I+L L + A E++VR Sbjct: 555 GYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVR 606 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/98 (21%), Positives = 51/98 (52%) Frame = -1 Query: 628 IWKEMMRRKVQPDRVSYTAIVGAFNRSGELDRCMDYYQEFRETGGTVDKTLAGLMVGVFC 449 ++KEM V PD ++Y I+ ++ + Y E+G ++ + +++ C Sbjct: 568 LFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLC 627 Query: 448 KTSRFNDLIQLLRDMKVQDTQLDRRLYMIVLNSLREAG 335 K +D +Q+ +++ + D +L+ R + I++++L + G Sbjct: 628 KNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVG 665 Score = 43.5 bits (101), Expect = 5e-04 Identities = 17/71 (23%), Positives = 37/71 (52%) Frame = -1 Query: 616 MMRRKVQPDRVSYTAIVGAFNRSGELDRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSR 437 M+R + PD ++ ++ A+ + G++D+ M + + R+ G + G ++G+ CK+ R Sbjct: 362 MVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 421 Query: 436 FNDLIQLLRDM 404 D + M Sbjct: 422 VEDAMLYFEQM 432 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/87 (24%), Positives = 36/87 (41%) Frame = -1 Query: 595 PDRVSYTAIVGAFNRSGELDRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTSRFNDLIQL 416 PD VSYT ++ F + G+ D+ Y E + G D ++ CK + +++ Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253 Query: 415 LRDMKVQDTQLDRRLYMIVLNSLREAG 335 L M D Y +L+ +G Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSG 280 Score = 39.7 bits (91), Expect = 0.008 Identities = 24/111 (21%), Positives = 52/111 (46%) Frame = -1 Query: 637 AEKIWKEMMRRKVQPDRVSYTAIVGAFNRSGELDRCMDYYQEFRETGGTVDKTLAGLMVG 458 A + EM+ R + PD V+Y +I+ A ++ +D+ M+ + G D ++ Sbjct: 215 AYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 274 Query: 457 VFCKTSRFNDLIQLLRDMKVQDTQLDRRLYMIVLNSLREAGLEVHVRWLQD 305 +C + + + I L+ M+ + D Y ++++ L + G + R + D Sbjct: 275 GYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFD 325 Score = 37.0 bits (84), Expect = 0.049 Identities = 23/111 (20%), Positives = 47/111 (42%) Frame = -1 Query: 637 AEKIWKEMMRRKVQPDRVSYTAIVGAFNRSGELDRCMDYYQEFRETGGTVDKTLAGLMVG 458 A ++ M++ V PD ++Y +I+ + SG+ + + ++ R G D L++ Sbjct: 250 AMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMD 309 Query: 457 VFCKTSRFNDLIQLLRDMKVQDTQLDRRLYMIVLNSLREAGLEVHVRWLQD 305 CK R + ++ M + + + Y +L G V + L D Sbjct: 310 YLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 360 Score = 35.4 bits (80), Expect = 0.14 Identities = 16/93 (17%), Positives = 49/93 (52%) Frame = -1 Query: 628 IWKEMMRRKVQPDRVSYTAIVGAFNRSGELDRCMDYYQEFRETGGTVDKTLAGLMVGVFC 449 ++ +M ++ + P+ V+Y A++G +SG ++ M Y+++ + G + + ++ C Sbjct: 393 VFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLC 452 Query: 448 KTSRFNDLIQLLRDMKVQDTQLDRRLYMIVLNS 350 +++ +L+ +M + L+ + +++S Sbjct: 453 TCNKWERAEELILEMLDRGICLNTIFFNSIIDS 485
>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915| Length = 463 Score = 35.4 bits (80), Expect = 0.14 Identities = 18/76 (23%), Positives = 36/76 (47%) Frame = -1 Query: 619 EMMRRKVQPDRVSYTAIVGAFNRSGELDRCMDYYQEFRETGGTVDKTLAGLMVGVFCKTS 440 E+ RR ++ D ++T IV R+G+ R +++ E G ++ +V CK Sbjct: 318 EIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAG 377 Query: 439 RFNDLIQLLRDMKVQD 392 + ++ M+V+D Sbjct: 378 HVDRAMRYFESMEVKD 393
>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I| Length = 1261 Score = 34.7 bits (78), Expect = 0.24 Identities = 19/81 (23%), Positives = 35/81 (43%) Frame = -1 Query: 637 AEKIWKEMMRRKVQPDRVSYTAIVGAFNRSGELDRCMDYYQEFRETGGTVDKTLAGLMVG 458 A I++E R V+P Y A++ R+ C +QE +E+G G ++ Sbjct: 910 ALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVIN 969 Query: 457 VFCKTSRFNDLIQLLRDMKVQ 395 C+ + +L +M+ Q Sbjct: 970 AACRIGDESLAEKLFAEMENQ 990
>CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2| Length = 1484 Score = 33.1 bits (74), Expect = 0.71 Identities = 34/122 (27%), Positives = 45/122 (36%), Gaps = 23/122 (18%) Frame = +2 Query: 257 NSWSVKSGFLLHGIEVILEPPDMNLQPGFSEAVENDHVQPP------------------V 382 N W+ +SGFL HG+ P ++P A +QPP V Sbjct: 841 NQWTEQSGFLPHGV-----PSSGYMRPPCKSA--GHRLQPPPVPAPSSLFGAPAQALRGV 893 Query: 383 QLGVLHLHVPE-----QLDEVVEPAGFAEHPHHEAGQGLVHRPSRLPELLVVVHAPVELP 547 Q G + PE QL V P G HPH A L P P++ + V P Sbjct: 894 QGGDSMMDSPEMIAMQQLSSRVCPPGVPYHPHQPAHPRL---PGPFPQVAHPMSVTVSAP 950 Query: 548 RP 553 +P Sbjct: 951 KP 952
>PTPR2_HUMAN (Q92932) Receptor-type tyrosine-protein phosphatase N2 precursor| (EC 3.1.3.48) (R-PTP-N2) (Islet cell autoantigen-related protein) (ICAAR) (IAR) (Phogrin) Length = 1015 Score = 31.6 bits (70), Expect = 2.1 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%) Frame = +2 Query: 326 NLQPGFSEAVENDHVQPPVQLGVLHLHVPEQLDEVVEPAGFAEHPHHEAGQG------LV 487 +L P ++ D + P V GV H+ L A A+ P G+G L+ Sbjct: 215 DLLPRTLGQLQPDELSPKVDSGVDRHHLMAALS-----AYAAQRPPAPPGEGSLEPQYLL 269 Query: 488 HRPSRLPELLVVVHAPVELPRPVERADD 571 PSR+P L+ AP + P P+ ++D Sbjct: 270 RAPSRMPRPLLAPAAPQKWPSPLGDSED 297
>MA2B2_MOUSE (O54782) Epididymis-specific alpha-mannosidase precursor (EC| 3.2.1.24) (Mannosidase alpha class 2B member 2) Length = 1018 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/67 (29%), Positives = 30/67 (44%) Frame = +2 Query: 263 WSVKSGFLLHGIEVILEPPDMNLQPGFSEAVENDHVQPPVQLGVLHLHVPEQLDEVVEPA 442 +S +SGF +G+ V EPP + P SE PV +HL+ + V + A Sbjct: 224 FSNRSGFYWNGVAVFPEPPPDGVYPNMSE---------PVTGANIHLYAEALVANVKQRA 274 Query: 443 GFAEHPH 463 + PH Sbjct: 275 AWFRTPH 281
>HMEN_DROVI (P09145) Segmentation polarity homeobox protein engrailed| Length = 584 Score = 31.2 bits (69), Expect = 2.7 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%) Frame = +2 Query: 224 PHAPMLKMSTRNSWSVKSGFLLHGIEVILEPPDMNLQPGFSEAVENDHVQPPVQLGVLHL 403 PH+P ++ ++ +H I + + DM+LQPG + + Q +Q HL Sbjct: 20 PHSP----PQQHQHILQPNLRIHAIPISITALDMSLQPGTAATAATLYQQQQLQ----HL 71 Query: 404 HVPEQL-----DEVVEPAGFAEHPHHEA 472 H +QL ++ AG HP A Sbjct: 72 HQLQQLQQLHQQQLAASAGVFHHPSTSA 99
>SYT_BUCAP (P46244) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 642 Score = 31.2 bits (69), Expect = 2.7 Identities = 13/47 (27%), Positives = 25/47 (53%) Frame = +1 Query: 34 RIIELYSLSGKSGIRSFWWYNGAIFYNTFTVSISSRFKEHGGKQIFT 174 +++ LY + +S FW NG I +N + + + KE+ K++ T Sbjct: 249 KLLNLYHMQKESPGMIFWHNNGWIIFNELEIFVREKLKEYKYKEVKT 295
>GCP_STRCO (O86793) Probable O-sialoglycoprotein endopeptidase (EC 3.4.24.57)| (Glycoprotease) Length = 374 Score = 31.2 bits (69), Expect = 2.7 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -3 Query: 440 PVQRPHPAAQGHEGAGHPAGQEAVHDRSQQ 351 PV PH QGH GHP G + VH+ S++ Sbjct: 342 PVTEPHVPGQGHPH-GHPHGHDHVHEVSKE 370
>FMT_IDILO (Q5QXI6) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 316 Score = 30.4 bits (67), Expect = 4.6 Identities = 16/56 (28%), Positives = 27/56 (48%) Frame = +2 Query: 404 HVPEQLDEVVEPAGFAEHPHHEAGQGLVHRPSRLPELLVVVHAPVELPRPVERADD 571 H+ + LDE + G P AG+G +PS + +L + PV P ++ +D Sbjct: 15 HLQQLLDESHQVVGVYTQPDRPAGRGKKPQPSAVKKLALEHQLPVYQPESLKSEED 70
>OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinase)| (Obscurin-MLCK) (Obscurin-RhoGEF) Length = 7968 Score = 30.4 bits (67), Expect = 4.6 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +2 Query: 164 KYLPILLQIYRAVPFSRHPNPHAPM 238 KYLP I+R VP S P P +PM Sbjct: 7316 KYLPFEFMIFRKVPKSAQPEPPSPM 7340
>Y48K_ELV (P35929) Hypothetical 48 kDa protein| Length = 440 Score = 30.0 bits (66), Expect = 6.0 Identities = 20/72 (27%), Positives = 28/72 (38%) Frame = +1 Query: 133 SSRFKEHGGKQIFTYFASNLQSSAFLQTPKSSCSDAEDEHQELVEREIRFSPPRN*SNPG 312 S RF ++F + L PK +C A+ + + SPPR NPG Sbjct: 17 SPRFNLGSSSRLFCESTPIFIGTIPLHCPKGTCPPAQSHGHSSLRTNLNSSPPRCPQNPG 76 Query: 313 AT*HEPPARLLG 348 EP + LG Sbjct: 77 T---EPSLQPLG 85
>PTCD1_PONPY (Q5R655) Pentatricopeptide repeat protein 1| Length = 698 Score = 30.0 bits (66), Expect = 6.0 Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 4/116 (3%) Frame = -1 Query: 616 MMRRKVQPDRVSYTAIVGAFNRSGELDRCMDYYQEFR----ETGGTVDKTLAGLMVGVFC 449 + ++QP +YTA++G R G L + Y + + E L + Sbjct: 162 LKEERLQPMESNYTALIGGCGRVGYLKKAFSLYNQMKKRDLEPSDATYTALFNVCAESPW 221 Query: 448 KTSRFNDLIQLLRDMKVQDTQLDRRLYMIVLNSLREAGLEVHVRWLQDYFNSVEEK 281 K S ++L + ++ ++ +L+ + Y + L+ A +R D F + K Sbjct: 222 KDSALQSALKLRQQLQAKNFELNLKTYHAL---LKMAAKCADLRMCLDVFKEIIHK 274
>VE8_BPV4 (P08352) Hypothetical protein E8| Length = 52 Score = 30.0 bits (66), Expect = 6.0 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 7/49 (14%) Frame = +3 Query: 66 IWNQIILVVQWCHF------LQY-IYSVNFFTIQGAWRQANIYLFCFKF 191 +W +L++ WC F Y + SVNF+ W N YL C F Sbjct: 3 LWLIYVLLLFWCAFNFCTVICNYCVPSVNFYYYSVRWMGLNFYLLCLLF 51
>PTN23_HUMAN (Q9H3S7) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) (His-domain-containing protein tyrosine phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14) (PTP-TD14) Length = 1636 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 2/40 (5%) Frame = +1 Query: 178 FASNLQS--SAFLQTPKSSCSDAEDEHQELVEREIRFSPP 291 F ++L+S +A L+ +S+C E Q+L++RE++ PP Sbjct: 678 FYADLESKVAALLERTQSTCQAREAARQQLLDRELKKKPP 717
>DNL4_ARATH (Q9LL84) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV)| (Polydeoxyribonucleotide synthase [ATP] 4) Length = 1219 Score = 29.6 bits (65), Expect = 7.9 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Frame = +2 Query: 413 EQLDEVVEPA-GFAEHPHHEAGQGLVHRPSRLPELLVVVHAPVELPR----PVERADDGR 577 E L +VV+P G E E G VHRPS P +VVHA ++ R VE D+G Sbjct: 362 ELLKKVVKPLKGRLEVLVPEGGLN-VHRPSGEPSWSIVVHAAADVERFFKETVENRDEGI 420 Query: 578 V 580 V Sbjct: 421 V 421
>N4BP3_MOUSE (Q8C7U1) NEDD4-binding protein 3 (N4BP3)| Length = 537 Score = 29.6 bits (65), Expect = 7.9 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%) Frame = -3 Query: 380 QEAVHDRSQQPPRSRAGGSCQV----APGLLQFRGG 285 +EAVH +Q PR A GSC+ + GLL GG Sbjct: 416 REAVHSLQEQAPREEAPGSCETDDCKSRGLLGEAGG 451 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,839,539 Number of Sequences: 219361 Number of extensions: 1960909 Number of successful extensions: 6261 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5978 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6255 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
