ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal30m10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473653.1| Oryza sativa (japonica cultivar-group), predic... 163 9e-37
2emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4,... 163 9e-37
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 163 9e-37
4dbj|AK068074.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 9e-37
5dbj|AK065769.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 9e-37
6gb|AC007581.6| Drosophila melanogaster clone BACR03I24, complete... 42 2.2
7ref|XM_322204.1| Neurospora crassa OR74A hypothetical protein (N... 42 2.2
8ref|XM_952150.1| Neurospora crassa OR74A hypothetical protein (N... 42 2.2
9emb|AL138708.17| Human DNA sequence from clone RP11-432E15 on ch... 42 2.2
10gb|AC092910.9| Homo sapiens 3 BAC RP11-767L7 (Roswell Park Cance... 42 2.2
11ref|NM_138101.2| Drosophila melanogaster CG3579-RA (CG3579), mRNA 42 2.2
12gb|AC007574.6|AC007574 Drosophila melanogaster, chromosome 2R, r... 42 2.2
13gb|AE003464.2| Drosophila melanogaster chromosome 2R, section 71... 42 2.2
14gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, c... 42 2.2
15gb|AC151792.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 8.7
16gb|AE010362.1| Methanopyrus kandleri AV19 section 61 of 157 of t... 40 8.7
17ref|XM_517637.1| PREDICTED: Pan troglodytes similar to triple fu... 40 8.7
18ref|NM_001003007.1| Canis familiaris elastase 1, pancreatic (ELA... 40 8.7
19gb|AC158954.17| Mus musculus chromosome 15, clone RP23-213P14, c... 40 8.7
20gb|U48436.1|HSU48436 Homo sapiens fragile X mental retardation p... 40 8.7
21gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 8.7
22gb|AC161872.7| Mus musculus BAC clone RP24-88E7 from chromosome ... 40 8.7
23gb|AC161873.5| Mus musculus BAC clone RP24-100P9 from chromosome... 40 8.7
24ref|XM_370166.1| Magnaporthe grisea 70-15 chromosome II hypothet... 40 8.7
25ref|NM_002025.2| Homo sapiens AF4/FMR2 family, member 2 (AFF2), ... 40 8.7
26ref|NM_007118.2| Homo sapiens triple functional domain (PTPRF in... 40 8.7
27gb|AC149235.1| Pan troglodytes chromosome X clone PTB-100E10 map... 40 8.7
28gb|AC164155.2| Mus musculus BAC clone RP24-548I6 from chromosome... 40 8.7
29gb|AC107456.9| Mus musculus chromosome 3, clone RP23-273L6, comp... 40 8.7
30ref|XM_383876.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 8.7
31gb|AC000065.1| Homo sapiens BAC clone CTB-85C5 from 7, complete ... 40 8.7
32gb|AC156607.5| Mus musculus chromosome 1, clone RP23-230A23, com... 40 8.7
33emb|BX248386.35| Zebrafish DNA sequence from clone CH211-231M12,... 40 8.7
34emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 8.7
35gb|AC161460.5| Mus musculus BAC clone RP23-125A3 from chromosome... 40 8.7
36gb|AY128534.1| Homo sapiens cyclin-dependent kinase 6 (CDK6) gen... 40 8.7
37gb|AC103974.6| Homo sapiens chromosome 11, clone RP11-1081L13, c... 40 8.7
38gb|AC097513.2| Homo sapiens BAC clone RP11-419E3 from 4, complet... 40 8.7
39gb|AE008684.1|AE008684 Mus musculus T-cell receptor alpha/delta ... 40 8.7
40gb|AE006470.1| Chlorobium tepidum TLS, complete genome 40 8.7
41dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
42gb|AC154484.2| Mus musculus BAC clone RP24-115C5 from chromosome... 40 8.7
43dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 8.7
44gb|AC012365.6| Homo sapiens BAC clone RP11-459C22 from 2, comple... 40 8.7
45gb|AC005731.2| Human X BAC RP11-159I8 (Roswell Park Cancer Insti... 40 8.7
46gb|AC117515.8| Homo sapiens 3 BAC RP11-797J6 (Roswell Park Cance... 40 8.7
47gb|BC035585.1| Homo sapiens, Similar to triple functional domain... 40 8.7
48dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
49gb|AC004551.1|AC004551 Homo sapiens 12q24.1 PAC RPCI1-71H24 (Ros... 40 8.7
50emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 8.7
51emb|BX294008.8| Mouse DNA sequence from clone RP23-28K9 on chrom... 40 8.7
52dbj|AB100595.1| Canis familiaris ELS1 mRNA for elastase 1, compl... 40 8.7
53gb|AF091395.1|AF091395 Homo sapiens Trio isoform mRNA, complete cds 40 8.7
54gb|AC123681.12| Mus musculus chromosome 15, clone RP23-287O20, c... 40 8.7
55gb|U42390.1|HSU42390 Homo sapiens Trio mRNA, complete cds 40 8.7
56gb|AC005402.1|AC005402 Mus musculus clone UWGC:mbac37 from 14D1-... 40 8.7
57dbj|AB209754.1| Homo sapiens mRNA for triple functional domain (... 40 8.7
58emb|AL845548.7| Mouse DNA sequence from clone RP23-307N14 on chr... 40 8.7 
>ref|XM_473653.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1821

 Score =  163 bits (82), Expect = 9e-37
 Identities = 184/218 (84%)
 Strand = Plus / Minus

                                                                        
Query: 417  agctggatgaggtcgttgaaccggctggttttgcagaacacccccaccatgaggccggcc 476
            |||| |||||| |||||||| ||||||  |||  |||||||||| |||||||| || |||
Sbjct: 1685 agctcgatgagctcgttgaatcggctgcatttagagaacacccctaccatgagcccagcc 1626

                                                                        
Query: 477  agggtcttgtccaccgtccctcccgtctccctgaactcctggtagtagtccatgcaccgg 536
            |||| | |||||||| | ||||| ||||||||||||||||||||  | ||||||||||||
Sbjct: 1625 agggccgtgtccacctttcctcctgtctccctgaactcctggtacaaatccatgcaccgg 1566

                                                                        
Query: 537  tcgagctcccccgaccggttgaacgcgccgacgatggccgtgtagctcacccggtcaggc 596
            || || || || |||||||||||||||  || ||| || |||||||| | || |||||||
Sbjct: 1565 tccagttctcctgaccggttgaacgcgttgatgatcgcggtgtagctgatcctgtcaggc 1506

                                                  
Query: 597  tgcaccttgcgccgcatcatctccttccatatcttctc 634
            || | |||||| ||||||||||||||||| ||||||||
Sbjct: 1505 tgaatcttgcggcgcatcatctccttccagatcttctc 1468



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 92/111 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  tcaggttttctcctccacggaattgaagtaatcctggagccacctgacatgaacctccag 334
            |||||||||||| |||||| || |||| | |   ||||||||| | ||||| ||||||||
Sbjct: 1821 tcaggttttctcttccacgaaactgaaattagtttggagccacttcacatggacctccag 1762

                                                               
Query: 335  cccggcttctcggaggctgttgagaacgatcatgtacagcctcctgtccag 385
            |||||| |||||||||||  | |  ||| ||| ||||||||||||||||||
Sbjct: 1761 cccggcgtctcggaggctcctcaacacggtcaggtacagcctcctgtccag 1711
to top
>emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01,
              complete sequence
          Length = 186325

 Score =  163 bits (82), Expect = 9e-37
 Identities = 184/218 (84%)
 Strand = Plus / Minus

                                                                          
Query: 417    agctggatgaggtcgttgaaccggctggttttgcagaacacccccaccatgaggccggcc 476
              |||| |||||| |||||||| ||||||  |||  |||||||||| |||||||| || |||
Sbjct: 103814 agctcgatgagctcgttgaatcggctgcatttagagaacacccctaccatgagcccagcc 103755

                                                                          
Query: 477    agggtcttgtccaccgtccctcccgtctccctgaactcctggtagtagtccatgcaccgg 536
              |||| | |||||||| | ||||| ||||||||||||||||||||  | ||||||||||||
Sbjct: 103754 agggccgtgtccacctttcctcctgtctccctgaactcctggtacaaatccatgcaccgg 103695

                                                                          
Query: 537    tcgagctcccccgaccggttgaacgcgccgacgatggccgtgtagctcacccggtcaggc 596
              || || || || |||||||||||||||  || ||| || |||||||| | || |||||||
Sbjct: 103694 tccagttctcctgaccggttgaacgcgttgatgatcgcggtgtagctgatcctgtcaggc 103635

                                                    
Query: 597    tgcaccttgcgccgcatcatctccttccatatcttctc 634
              || | |||||| ||||||||||||||||| ||||||||
Sbjct: 103634 tgaatcttgcggcgcatcatctccttccagatcttctc 103597



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                          
Query: 274    atcaggttttctcctccacggaattgaagtaatcctggagccacctgacatgaacctcca 333
              ||||||||||||| |||||| || |||| | |   ||||||||| | ||||| |||||||
Sbjct: 103951 atcaggttttctcttccacgaaactgaaattagtttggagccacttcacatggacctcca 103892

                                                                  
Query: 334    gcccggcttctcggaggctgttgagaacgatcatgtacagcctcctgtccag 385
              ||||||| |||||||||||  | |  ||| ||| ||||||||||||||||||
Sbjct: 103891 gcccggcgtctcggaggctcctcaacacggtcaggtacagcctcctgtccag 103840



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 150    gcatggaggcaagcaaatatttacctatttt 180
              |||| |||||||||||||||||||| |||||
Sbjct: 104075 gcattgaggcaagcaaatatttacccatttt 104045
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  163 bits (82), Expect = 9e-37
 Identities = 184/218 (84%)
 Strand = Plus / Minus

                                                                            
Query: 417      agctggatgaggtcgttgaaccggctggttttgcagaacacccccaccatgaggccggcc 476
                |||| |||||| |||||||| ||||||  |||  |||||||||| |||||||| || |||
Sbjct: 29430798 agctcgatgagctcgttgaatcggctgcatttagagaacacccctaccatgagcccagcc 29430739

                                                                            
Query: 477      agggtcttgtccaccgtccctcccgtctccctgaactcctggtagtagtccatgcaccgg 536
                |||| | |||||||| | ||||| ||||||||||||||||||||  | ||||||||||||
Sbjct: 29430738 agggccgtgtccacctttcctcctgtctccctgaactcctggtacaaatccatgcaccgg 29430679

                                                                            
Query: 537      tcgagctcccccgaccggttgaacgcgccgacgatggccgtgtagctcacccggtcaggc 596
                || || || || |||||||||||||||  || ||| || |||||||| | || |||||||
Sbjct: 29430678 tccagttctcctgaccggttgaacgcgttgatgatcgcggtgtagctgatcctgtcaggc 29430619

                                                      
Query: 597      tgcaccttgcgccgcatcatctccttccatatcttctc 634
                || | |||||| ||||||||||||||||| ||||||||
Sbjct: 29430618 tgaatcttgcggcgcatcatctccttccagatcttctc 29430581



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                            
Query: 274      atcaggttttctcctccacggaattgaagtaatcctggagccacctgacatgaacctcca 333
                ||||||||||||| |||||| || |||| | |   ||||||||| | ||||| |||||||
Sbjct: 29430935 atcaggttttctcttccacgaaactgaaattagtttggagccacttcacatggacctcca 29430876

                                                                    
Query: 334      gcccggcttctcggaggctgttgagaacgatcatgtacagcctcctgtccag 385
                ||||||| |||||||||||  | |  ||| ||| ||||||||||||||||||
Sbjct: 29430875 gcccggcgtctcggaggctcctcaacacggtcaggtacagcctcctgtccag 29430824



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 150      gcatggaggcaagcaaatatttacctatttt 180
                |||| |||||||||||||||||||| |||||
Sbjct: 29431059 gcattgaggcaagcaaatatttacccatttt 29431029
to top
>dbj|AK068074.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132A21, full
            insert sequence
          Length = 4615

 Score =  163 bits (82), Expect = 9e-37
 Identities = 184/218 (84%)
 Strand = Plus / Plus

                                                                        
Query: 417  agctggatgaggtcgttgaaccggctggttttgcagaacacccccaccatgaggccggcc 476
            |||| |||||| |||||||| ||||||  |||  |||||||||| |||||||| || |||
Sbjct: 1856 agctcgatgagctcgttgaatcggctgcatttagagaacacccctaccatgagcccagcc 1915

                                                                        
Query: 477  agggtcttgtccaccgtccctcccgtctccctgaactcctggtagtagtccatgcaccgg 536
            |||| | |||||||| | ||||| ||||||||||||||||||||  | ||||||||||||
Sbjct: 1916 agggccgtgtccacctttcctcctgtctccctgaactcctggtacaaatccatgcaccgg 1975

                                                                        
Query: 537  tcgagctcccccgaccggttgaacgcgccgacgatggccgtgtagctcacccggtcaggc 596
            || || || || |||||||||||||||  || ||| || |||||||| | || |||||||
Sbjct: 1976 tccagttctcctgaccggttgaacgcgttgatgatcgcggtgtagctgatcctgtcaggc 2035

                                                  
Query: 597  tgcaccttgcgccgcatcatctccttccatatcttctc 634
            || | |||||| ||||||||||||||||| ||||||||
Sbjct: 2036 tgaatcttgcggcgcatcatctccttccagatcttctc 2073



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 93/112 (83%)
 Strand = Plus / Plus

                                                                        
Query: 274  atcaggttttctcctccacggaattgaagtaatcctggagccacctgacatgaacctcca 333
            ||||||||||||| |||||| || |||| | |   ||||||||| | ||||| |||||||
Sbjct: 1719 atcaggttttctcttccacgaaactgaaattagtttggagccacttcacatggacctcca 1778

                                                                
Query: 334  gcccggcttctcggaggctgttgagaacgatcatgtacagcctcctgtccag 385
            ||||||| |||||||||||  | |  ||| ||| ||||||||||||||||||
Sbjct: 1779 gcccggcgtctcggaggctcctcaacacggtcaggtacagcctcctgtccag 1830



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 150  gcatggaggcaagcaaatatttacctatttt 180
            |||| |||||||||||||||||||| |||||
Sbjct: 1595 gcattgaggcaagcaaatatttacccatttt 1625
to top
>dbj|AK065769.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040G18, full
            insert sequence
          Length = 2259

 Score =  163 bits (82), Expect = 9e-37
 Identities = 184/218 (84%)
 Strand = Plus / Minus

                                                                        
Query: 417  agctggatgaggtcgttgaaccggctggttttgcagaacacccccaccatgaggccggcc 476
            |||| |||||| |||||||| ||||||  |||  |||||||||| |||||||| || |||
Sbjct: 1747 agctcgatgagctcgttgaatcggctgcatttagagaacacccctaccatgagcccagcc 1688

                                                                        
Query: 477  agggtcttgtccaccgtccctcccgtctccctgaactcctggtagtagtccatgcaccgg 536
            |||| | |||||||| | ||||| ||||||||||||||||||||  | ||||||||||||
Sbjct: 1687 agggccgtgtccacctttcctcctgtctccctgaactcctggtacaaatccatgcaccgg 1628

                                                                        
Query: 537  tcgagctcccccgaccggttgaacgcgccgacgatggccgtgtagctcacccggtcaggc 596
            || || || || |||||||||||||||  || ||| || |||||||| | || |||||||
Sbjct: 1627 tccagttctcctgaccggttgaacgcgttgatgatcgcggtgtagctgatcctgtcaggc 1568

                                                  
Query: 597  tgcaccttgcgccgcatcatctccttccatatcttctc 634
            || | |||||| ||||||||||||||||| ||||||||
Sbjct: 1567 tgaatcttgcggcgcatcatctccttccagatcttctc 1530



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                        
Query: 274  atcaggttttctcctccacggaattgaagtaatcctggagccacctgacatgaacctcca 333
            ||||||||||||| |||||| || |||| | |   ||||||||| | ||||| |||||||
Sbjct: 1884 atcaggttttctcttccacgaaactgaaattagtttggagccacttcacatggacctcca 1825

                                                                
Query: 334  gcccggcttctcggaggctgttgagaacgatcatgtacagcctcctgtccag 385
            ||||||| |||||||||||  | |  ||| ||| ||||||||||||||||||
Sbjct: 1824 gcccggcgtctcggaggctcctcaacacggtcaggtacagcctcctgtccag 1773



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 150  gcatggaggcaagcaaatatttacctatttt 180
            |||| |||||||||||||||||||| |||||
Sbjct: 2008 gcattgaggcaagcaaatatttacccatttt 1978
to top
>gb|AC007581.6| Drosophila melanogaster clone BACR03I24, complete sequence
          Length = 163517

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 601   ccttgcgccgcatcatctcct 621
             |||||||||||||||||||||
Sbjct: 36333 ccttgcgccgcatcatctcct 36313
to top
>ref|XM_322204.1| Neurospora crassa OR74A hypothetical protein (NCU00119.1) partial
           mRNA
          Length = 3171

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 602 cttgcgccgcatcatctccttccat 626
           ||||||| |||||||||||||||||
Sbjct: 384 cttgcgcagcatcatctccttccat 360
to top
>ref|XM_952150.1| Neurospora crassa OR74A hypothetical protein (NCU00119.1) partial
           mRNA
          Length = 3171

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 602 cttgcgccgcatcatctccttccat 626
           ||||||| |||||||||||||||||
Sbjct: 384 cttgcgcagcatcatctccttccat 360
to top
>emb|AL138708.17| Human DNA sequence from clone RP11-432E15 on chromosome 13 Contains the
              3' end of the gene similar to G protein coupled receptor
              affecting testicular descent (H. sapiens)(GREAT)and a CpG
              island, complete sequence
          Length = 170522

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 103    attttctacaatacatttaca 123
              |||||||||||||||||||||
Sbjct: 156606 attttctacaatacatttaca 156586
to top
>gb|AC092910.9| Homo sapiens 3 BAC RP11-767L7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 178311

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 167    tatttacctattttgcttcaaattt 191
              |||||||||||||||||| ||||||
Sbjct: 138423 tatttacctattttgctttaaattt 138399
to top
>ref|NM_138101.2| Drosophila melanogaster CG3579-RA (CG3579), mRNA
          Length = 927

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 601 ccttgcgccgcatcatctcct 621
           |||||||||||||||||||||
Sbjct: 451 ccttgcgccgcatcatctcct 431
to top
>gb|AC007574.6|AC007574 Drosophila melanogaster, chromosome 2R, region 60D-60D, BAC clone
              BACR11C07, complete sequence
          Length = 171151

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 601    ccttgcgccgcatcatctcct 621
              |||||||||||||||||||||
Sbjct: 143382 ccttgcgccgcatcatctcct 143362
to top
>gb|AE003464.2| Drosophila melanogaster chromosome 2R, section 71 of 73 of the complete
              sequence
          Length = 310958

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 601    ccttgcgccgcatcatctcct 621
              |||||||||||||||||||||
Sbjct: 231435 ccttgcgccgcatcatctcct 231415
to top
>gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, complete sequence
          Length = 140942

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 103   attttctacaatacatttaca 123
             |||||||||||||||||||||
Sbjct: 40076 attttctacaatacatttaca 40056
to top
>gb|AC151792.1| Ornithorhynchus anatinus chromosome UNK clone OABb-103A1, complete
             sequence
          Length = 107943

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   tgctgaagatgagcaccagg 256
             ||||||||||||||||||||
Sbjct: 45330 tgctgaagatgagcaccagg 45349
to top
>gb|AE010362.1| Methanopyrus kandleri AV19 section 61 of 157 of the complete genome
          Length = 11952

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 532  accggtcgagctcccccgac 551
            ||||||||||||||||||||
Sbjct: 7529 accggtcgagctcccccgac 7548
to top
>ref|XM_517637.1| PREDICTED: Pan troglodytes similar to triple functional domain
           (PTPRF interacting) (LOC461730), mRNA
          Length = 3633

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 407 gtccctgagcagctggatgaggtc 430
           |||||||||| |||||||||||||
Sbjct: 921 gtccctgagctgctggatgaggtc 898
to top
>ref|NM_001003007.1| Canis familiaris elastase 1, pancreatic (ELA1), mRNA
          Length = 938

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 379 tgtccagctgggtgtcctgc 398
           ||||||||||||||||||||
Sbjct: 383 tgtccagctgggtgtcctgc 402
to top
>gb|AC158954.17| Mus musculus chromosome 15, clone RP23-213P14, complete sequence
          Length = 188940

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     atcagatcattttggtggta 92
              ||||||||||||||||||||
Sbjct: 172235 atcagatcattttggtggta 172216
to top
>gb|U48436.1|HSU48436 Homo sapiens fragile X mental retardation protein FMR2p (FMR2) mRNA,
            complete cds
          Length = 13695

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 611  catcatctccttccatatct 630
            ||||||||||||||||||||
Sbjct: 9808 catcatctccttccatatct 9827
to top
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 562    cgccgacgatggccgtgtag 581
              ||||||||||||||||||||
Sbjct: 793987 cgccgacgatggccgtgtag 794006
to top
>gb|AC161872.7| Mus musculus BAC clone RP24-88E7 from chromosome 14, complete
            sequence
          Length = 226399

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 613  tcatctccttccatatcttc 632
            ||||||||||||||||||||
Sbjct: 7387 tcatctccttccatatcttc 7368
to top
>gb|AC161873.5| Mus musculus BAC clone RP24-100P9 from chromosome 14, complete sequence
          Length = 240703

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 613   tcatctccttccatatcttc 632
             ||||||||||||||||||||
Sbjct: 90269 tcatctccttccatatcttc 90250
to top
>ref|XM_370166.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein
            (MG06663.4) partial mRNA
          Length = 1443

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 235  gatgctgaagatgagcacca 254
            ||||||||||||||||||||
Sbjct: 1140 gatgctgaagatgagcacca 1121
to top
>ref|NM_002025.2| Homo sapiens AF4/FMR2 family, member 2 (AFF2), mRNA
          Length = 13746

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 611  catcatctccttccatatct 630
            ||||||||||||||||||||
Sbjct: 9859 catcatctccttccatatct 9878
to top
>ref|NM_007118.2| Homo sapiens triple functional domain (PTPRF interacting) (TRIO),
            mRNA
          Length = 10244

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 407  gtccctgagcagctggatgaggtc 430
            |||||||||| |||||||||||||
Sbjct: 2226 gtccctgagctgctggatgaggtc 2203
to top
>gb|AC149235.1| Pan troglodytes chromosome X clone PTB-100E10 map human ortholog q28,
              complete sequence
          Length = 183411

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 611    catcatctccttccatatct 630
              ||||||||||||||||||||
Sbjct: 101412 catcatctccttccatatct 101431
to top
>gb|AC164155.2| Mus musculus BAC clone RP24-548I6 from chromosome 14, complete sequence
          Length = 215419

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 613   tcatctccttccatatcttc 632
             ||||||||||||||||||||
Sbjct: 79644 tcatctccttccatatcttc 79625
to top
>gb|AC107456.9| Mus musculus chromosome 3, clone RP23-273L6, complete sequence
          Length = 185661

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   caccttcatgtccctgagca 417
             ||||||||||||||||||||
Sbjct: 61908 caccttcatgtccctgagca 61927
to top
>ref|XM_383876.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03700.1)
           partial mRNA
          Length = 1599

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 349 ggctgttgagaacgatcatg 368
           ||||||||||||||||||||
Sbjct: 247 ggctgttgagaacgatcatg 228
to top
>gb|AC000065.1| Homo sapiens BAC clone CTB-85C5 from 7, complete sequence
          Length = 82261

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   acaatacatttacagtgtca 129
             ||||||||||||||||||||
Sbjct: 74021 acaatacatttacagtgtca 74040
to top
>gb|AC156607.5| Mus musculus chromosome 1, clone RP23-230A23, complete sequence
          Length = 182640

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   acagagcagtgcctttctcc 211
             ||||||||||||||||||||
Sbjct: 87770 acagagcagtgcctttctcc 87789
to top
>emb|BX248386.35| Zebrafish DNA sequence from clone CH211-231M12, complete sequence
          Length = 148681

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   ttctacaatacatttacagt 125
             ||||||||||||||||||||
Sbjct: 45061 ttctacaatacatttacagt 45080
to top
>emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5,
             complete genome; segment 8/10
          Length = 349136

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 406   tgtccctgagcagctggatgaggtcgttgaac 437
             |||||||||||  |||||| ||||||||||||
Sbjct: 11018 tgtccctgagcttctggataaggtcgttgaac 10987
to top
>gb|AC161460.5| Mus musculus BAC clone RP23-125A3 from chromosome 14, complete sequence
          Length = 208571

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 613    tcatctccttccatatcttc 632
              ||||||||||||||||||||
Sbjct: 154987 tcatctccttccatatcttc 154968
to top
>gb|AY128534.1| Homo sapiens cyclin-dependent kinase 6 (CDK6) gene, complete cds
          Length = 220803

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    acaatacatttacagtgtca 129
              ||||||||||||||||||||
Sbjct: 153841 acaatacatttacagtgtca 153822
to top
>gb|AC103974.6| Homo sapiens chromosome 11, clone RP11-1081L13, complete sequence
          Length = 189230

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   tcaatttcttcacgattcaa 146
             ||||||||||||||||||||
Sbjct: 24792 tcaatttcttcacgattcaa 24811
to top
>gb|AC097513.2| Homo sapiens BAC clone RP11-419E3 from 4, complete sequence
          Length = 151389

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   aatcctggagccacctgaca 323
             ||||||||||||||||||||
Sbjct: 92410 aatcctggagccacctgaca 92391
to top
>gb|AE008684.1|AE008684 Mus musculus T-cell receptor alpha/delta locus  section 2 of 4 of the
              complete region
          Length = 400099

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 613    tcatctccttccatatcttc 632
              ||||||||||||||||||||
Sbjct: 154868 tcatctccttccatatcttc 154887
to top
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 556    tgaacgcgccgacgatggcc 575
              ||||||||||||||||||||
Sbjct: 511699 tgaacgcgccgacgatggcc 511718
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 279      gttttctcctccacggaatt 298
                ||||||||||||||||||||
Sbjct: 23515750 gttttctcctccacggaatt 23515769
to top
>gb|AC154484.2| Mus musculus BAC clone RP24-115C5 from chromosome 14, complete sequence
          Length = 193855

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   cattttctacaatacattta 121
             ||||||||||||||||||||
Sbjct: 24473 cattttctacaatacattta 24492
to top
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 406     tgtccctgagcagctggatgaggtcgttgaac 437
               |||||||||||  |||||| ||||||||||||
Sbjct: 2483842 tgtccctgagcttctggataaggtcgttgaac 2483811
to top
>gb|AC012365.6| Homo sapiens BAC clone RP11-459C22 from 2, complete sequence
          Length = 187848

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    aaatatttacctattttgct 183
              ||||||||||||||||||||
Sbjct: 184712 aaatatttacctattttgct 184731
to top
>gb|AC005731.2| Human X BAC RP11-159I8 (Roswell Park Cancer Institute Human BAC Library),
              Cosmid LL0XNC01-3C3 (LLNL X Chromosome Library), and BAC
              GS1-92B2 (Genome Systems Human BAC Library) complete
              sequence
          Length = 143944

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 611    catcatctccttccatatct 630
              ||||||||||||||||||||
Sbjct: 135567 catcatctccttccatatct 135586
to top
>gb|AC117515.8| Homo sapiens 3 BAC RP11-797J6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 126982

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   gaattgaagtaatcctggag 313
             ||||||||||||||||||||
Sbjct: 41157 gaattgaagtaatcctggag 41138
to top
>gb|BC035585.1| Homo sapiens, Similar to triple functional domain (PTPRF
            interacting), clone IMAGE:5497679, mRNA, partial cds
          Length = 5009

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 407  gtccctgagcagctggatgaggtc 430
            |||||||||| |||||||||||||
Sbjct: 2169 gtccctgagctgctggatgaggtc 2146
to top
>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1791_B03
          Length = 166214

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   gttttctcctccacggaatt 298
             ||||||||||||||||||||
Sbjct: 81433 gttttctcctccacggaatt 81452
to top
>gb|AC004551.1|AC004551 Homo sapiens 12q24.1 PAC RPCI1-71H24 (Roswell Park Cancer Institute Human
              PAC library) complete sequence
          Length = 162346

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 386    ctgggtgtcctgcaccttcatgtc 409
              ||||||||||||||||| ||||||
Sbjct: 150836 ctgggtgtcctgcacctccatgtc 150859
to top
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 559     acgcgccgacgatggccgtg 578
               ||||||||||||||||||||
Sbjct: 2615575 acgcgccgacgatggccgtg 2615594
to top
>emb|BX294008.8| Mouse DNA sequence from clone RP23-28K9 on chromosome X, complete
             sequence
          Length = 136485

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 166   atatttacctattttgcttcaaat 189
             |||||||||||||||| |||||||
Sbjct: 15232 atatttacctattttgtttcaaat 15209
to top
>dbj|AB100595.1| Canis familiaris ELS1 mRNA for elastase 1, complete cds
          Length = 938

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 379 tgtccagctgggtgtcctgc 398
           ||||||||||||||||||||
Sbjct: 383 tgtccagctgggtgtcctgc 402
to top
>gb|AF091395.1|AF091395 Homo sapiens Trio isoform mRNA, complete cds
          Length = 9449

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 407  gtccctgagcagctggatgaggtc 430
            |||||||||| |||||||||||||
Sbjct: 2109 gtccctgagctgctggatgaggtc 2086
to top
>gb|AC123681.12| Mus musculus chromosome 15, clone RP23-287O20, complete sequence
          Length = 172148

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    atcagatcattttggtggta 92
             ||||||||||||||||||||
Sbjct: 56321 atcagatcattttggtggta 56302
to top
>gb|U42390.1|HSU42390 Homo sapiens Trio mRNA, complete cds
          Length = 8906

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 407  gtccctgagcagctggatgaggtc 430
            |||||||||| |||||||||||||
Sbjct: 2109 gtccctgagctgctggatgaggtc 2086
to top
>gb|AC005402.1|AC005402 Mus musculus clone UWGC:mbac37 from 14D1-D2 (T-Cell Receptor Alpha
             Locus), complete sequence
          Length = 132090

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 613   tcatctccttccatatcttc 632
             ||||||||||||||||||||
Sbjct: 61985 tcatctccttccatatcttc 62004
to top
>dbj|AB209754.1| Homo sapiens mRNA for triple functional domain (PTPRF interacting)
            variant protein
          Length = 7455

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 407  gtccctgagcagctggatgaggtc 430
            |||||||||| |||||||||||||
Sbjct: 1138 gtccctgagctgctggatgaggtc 1115
to top
>emb|AL845548.7| Mouse DNA sequence from clone RP23-307N14 on chromosome 2, complete
             sequence
          Length = 142263

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   tttacagagcagtgcctttc 208
             ||||||||||||||||||||
Sbjct: 29059 tttacagagcagtgcctttc 29078


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,367,360
Number of Sequences: 3902068
Number of extensions: 5367360
Number of successful extensions: 116315
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116002
Number of HSP's gapped (non-prelim): 303
length of query: 637
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 614
effective length of database: 17,143,297,704
effective search space: 10525984790256
effective search space used: 10525984790256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top