ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal8c05 |
|---|---|
| Clone Library Name | barley_pub |
>IF33_ARATH (Q9C5Z2) Eukaryotic translation initiation factor 3 subunit 3| (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h) Length = 337 Score = 209 bits (531), Expect(3) = 2e-60 Identities = 96/131 (73%), Positives = 114/131 (87%) Frame = -3 Query: 538 SPVSQCDFDRLKLSTAPFMERNLEFMIGCMDGLSSEQNKFQYYYRNLGRQQSQQQAWLQK 359 +PVSQ D+DRL ST PF+E N+EF+I CMD LS EQ KFQYYYRNL RQQ+QQQAWLQK Sbjct: 207 TPVSQGDYDRLHSSTTPFLENNMEFLIKCMDDLSMEQQKFQYYYRNLSRQQAQQQAWLQK 266 Query: 358 RRQENMSRKAAGEEPLPEEDPSNPIFKPLPEPSRLEGYLVTNQISSYCNHINGVAGQSFN 179 RR ENM+RK+AGEEPLPEEDPSNPIFK +PEPSRLE +L+TNQ+S++C INGVAGQ+F+ Sbjct: 267 RRTENMARKSAGEEPLPEEDPSNPIFKAIPEPSRLESFLITNQVSNFCGQINGVAGQNFS 326 Query: 178 RLYLMKALQED 146 RLYL KAL ++ Sbjct: 327 RLYLTKALHDN 337 Score = 41.2 bits (95), Expect(3) = 2e-60 Identities = 18/21 (85%), Positives = 19/21 (90%) Frame = -1 Query: 642 REKKLSWVDIFEEIPIKVSNS 580 REK SW+DIFEEIPIKVSNS Sbjct: 173 REKNFSWMDIFEEIPIKVSNS 193 Score = 23.5 bits (49), Expect(3) = 2e-60 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -2 Query: 596 LKCPTRALVSAFMKELEPE 540 +K ALVSAFM ELE + Sbjct: 188 IKVSNSALVSAFMTELETD 206
>IF33_HUMAN (O15372) Eukaryotic translation initiation factor 3 subunit 3| (eIF-3 gamma) (eIF3 p40 subunit) (eIF3h) Length = 352 Score = 99.4 bits (246), Expect(2) = 6e-21 Identities = 49/135 (36%), Positives = 83/135 (61%), Gaps = 1/135 (0%) Frame = -3 Query: 550 WNLRSPVSQCD-FDRLKLSTAPFMERNLEFMIGCMDGLSSEQNKFQYYYRNLGRQQSQQQ 374 W L + D + L L+++ + +NL+ ++ +D +S + K+ Y RN +QQ Q+ Sbjct: 216 WELEKKSAVADKHELLSLASSNHLGKNLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKH 275 Query: 373 AWLQKRRQENMSRKAAGEEPLPEEDPSNPIFKPLPEPSRLEGYLVTNQISSYCNHINGVA 194 + Q+R+QENM R++ GE PLPEED S +FKP P+R++ L+ QI++YC +I Sbjct: 276 QYQQRRQQENMQRQSRGEPPLPEEDLSK-LFKPPQPPARMDSLLIAGQINTYCQNIKEFT 334 Query: 193 GQSFNRLYLMKALQE 149 Q+ +L++ +ALQE Sbjct: 335 AQNLGKLFMAQALQE 349 Score = 21.2 bits (43), Expect(2) = 6e-21 Identities = 7/21 (33%), Positives = 15/21 (71%) Frame = -1 Query: 642 REKKLSWVDIFEEIPIKVSNS 580 ++ +++ +FEE+PI + NS Sbjct: 188 KKANITFEYMFEEVPIVIKNS 208
>IF33_MOUSE (Q91WK2) Eukaryotic translation initiation factor 3 subunit 3| (eIF-3 gamma) (eIF3 p40 subunit) (eIF3h) Length = 352 Score = 97.4 bits (241), Expect(2) = 1e-20 Identities = 48/135 (35%), Positives = 83/135 (61%), Gaps = 1/135 (0%) Frame = -3 Query: 550 WNLRSPVSQCD-FDRLKLSTAPFMERNLEFMIGCMDGLSSEQNKFQYYYRNLGRQQSQQQ 374 W L + D + L L+++ + ++L+ ++ +D +S + K+ Y RN +QQ Q+ Sbjct: 216 WELEKKSAVADKHELLSLASSNHLGKSLQLLMDRVDEMSQDIIKYNTYMRNTSKQQQQKH 275 Query: 373 AWLQKRRQENMSRKAAGEEPLPEEDPSNPIFKPLPEPSRLEGYLVTNQISSYCNHINGVA 194 + Q+R+QENM R++ GE PLPEED S +FKP P+R++ L+ QI++YC +I Sbjct: 276 QYQQRRQQENMQRQSRGEPPLPEEDLSK-LFKPHQAPARMDSLLIAGQINTYCQNIKEFT 334 Query: 193 GQSFNRLYLMKALQE 149 Q+ +L++ +ALQE Sbjct: 335 AQNLGKLFMAQALQE 349 Score = 21.9 bits (45), Expect(2) = 1e-20 Identities = 7/21 (33%), Positives = 15/21 (71%) Frame = -1 Query: 642 REKKLSWVDIFEEIPIKVSNS 580 ++ +++ +FEE+PI + NS Sbjct: 188 KKASITFEHMFEEVPIVIKNS 208
>IF33_BOVIN (Q56JZ5) Eukaryotic translation initiation factor 3 subunit 3| (eIF-3 gamma) Length = 352 Score = 97.1 bits (240), Expect(2) = 2e-20 Identities = 48/135 (35%), Positives = 82/135 (60%), Gaps = 1/135 (0%) Frame = -3 Query: 550 WNLRSPVSQCD-FDRLKLSTAPFMERNLEFMIGCMDGLSSEQNKFQYYYRNLGRQQSQQQ 374 W L + D + L L+++ + + L+ ++ +D +S + K+ Y RN +QQ Q+ Sbjct: 216 WELEKKSAVADKHELLSLASSNHLGKTLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKH 275 Query: 373 AWLQKRRQENMSRKAAGEEPLPEEDPSNPIFKPLPEPSRLEGYLVTNQISSYCNHINGVA 194 + Q+R+QENM R++ GE PLPEED S +FKP P+R++ L+ QI++YC +I Sbjct: 276 QYQQRRQQENMQRQSRGEPPLPEEDLSK-LFKPHQPPARMDSLLIAGQINTYCQNIKEFT 334 Query: 193 GQSFNRLYLMKALQE 149 Q+ +L++ +ALQE Sbjct: 335 AQNLGKLFMAQALQE 349 Score = 21.6 bits (44), Expect(2) = 2e-20 Identities = 7/21 (33%), Positives = 15/21 (71%) Frame = -1 Query: 642 REKKLSWVDIFEEIPIKVSNS 580 ++ +++ +FEE+PI + NS Sbjct: 188 KKGNITFEHMFEEVPIVIKNS 208
>YHW1_YEAST (P38856) Hypothetical 71.7 kDa protein in REC104-SOL3 intergenic| region Length = 637 Score = 33.9 bits (76), Expect = 0.42 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 14/91 (15%) Frame = -3 Query: 433 EQNKFQYYYRNLGRQQSQQQAWLQKRRQENMSRK------AAGEEPL--------PEEDP 296 ++ +FQ +Y QQ QQQ Q+++Q+ ++ AG P+ P+ P Sbjct: 546 DKMEFQAHYTQNHLQQQQQQQQQQQQQQQQQPQQGYYVPATAGANPVTNITGTVQPQNFP 605 Query: 295 SNPIFKPLPEPSRLEGYLVTNQISSYCNHIN 203 P +P PE S+ + ++ NQ Y N++N Sbjct: 606 FYPQQQPQPEQSQTQQPVLGNQ---YANNLN 633
>DRI_DROME (Q24573) Protein dead ringer (Protein retained)| Length = 911 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/43 (37%), Positives = 27/43 (62%) Frame = -3 Query: 439 SSEQNKFQYYYRNLGRQQSQQQAWLQKRRQENMSRKAAGEEPL 311 S +Q + Q++++ +QQSQQQ LQ++RQ + S + E L Sbjct: 517 SQQQQQQQHHHQQQQQQQSQQQHHLQQQRQRSQSPDLSKHEAL 559
>GLT_DROME (P33438) Glutactin precursor| Length = 1026 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%) Frame = -3 Query: 436 SEQNKFQYYYRNLGRQQSQQQA-----WLQKRRQENMSRKAAGEEPLPEEDPS 293 SE+++ Q L R+Q +QQ L++ +QE ++ +EP PEE PS Sbjct: 812 SEEDREQQQQEQLRREQQEQQEREYQLQLEREQQEREQQERGQQEPGPEEYPS 864
>PRP5_DEBHA (Q6BML1) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC| 3.6.1.-) Length = 913 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/50 (36%), Positives = 29/50 (58%) Frame = -3 Query: 400 LGRQQSQQQAWLQKRRQENMSRKAAGEEPLPEEDPSNPIFKPLPEPSRLE 251 L R+Q Q AW+QKR+QEN ++ +G+ + D +N + L R+E Sbjct: 50 LKRRQEQLAAWMQKRQQEN--QEPSGKVTISATDETNIDKEKLIRQQRIE 97
>YN91_SCHPO (Q9Y808) Hypothetical protein C146.01 in chromosome II| Length = 1063 Score = 31.2 bits (69), Expect = 2.7 Identities = 22/97 (22%), Positives = 43/97 (44%) Frame = -3 Query: 442 LSSEQNKFQYYYRNLGRQQSQQQAWLQKRRQENMSRKAAGEEPLPEEDPSNPIFKPLPEP 263 L+ +Q +F + +Q+ QQQ Q+ +Q + ++ P E + + P Sbjct: 140 LTPQQRQFLLQQSQIQQQRQQQQQQSQQPQQTQQPQASSPTAPNTEANQQ----RSGSVP 195 Query: 262 SRLEGYLVTNQISSYCNHINGVAGQSFNRLYLMKALQ 152 R+ L Q+++ CN I + ++ N M+ LQ Sbjct: 196 GRIVPALTQQQLNNLCNQITALLARNGNPPIPMQKLQ 232
>MED12_HUMAN (Q93074) Mediator of RNA polymerase II transcription subunit 12| (Thyroid hormone receptor-associated protein complex 230 kDa component) (Trap230) (Activator-recruited cofactor 240 kDa component) (ARC240) (CAG repeat protein 45) (OPA-containin Length = 2212 Score = 31.2 bits (69), Expect = 2.7 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = -3 Query: 433 EQNKFQYYYRNLGRQQSQQQAWLQKRRQENMSRKAAGEEPLPEEDP 296 +Q + Q + +QQ QQQ Q++ Q+ ++AA +P P+ P Sbjct: 2125 QQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQAAPPQPQPQSQP 2170
>NUMBL_HUMAN (Q9Y6R0) Numb-like protein (Numb-R)| Length = 609 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = -3 Query: 391 QQSQQQAWLQKRRQENMSRKAAGEEPLPEEDPSNPIFKPLPEP 263 QQ QQQ Q+++Q+ ++AA P+P P+ +P P P Sbjct: 427 QQQQQQQQQQQQQQQQQQQQAASVAPVPTMPPA---LQPFPAP 466
>RAS_CRYNE (O74650) Ras-like protein| Length = 216 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/36 (41%), Positives = 23/36 (63%) Frame = -2 Query: 419 PILLSQPRKATVTATGMASKEKAREHVEKGCWRGAV 312 P ++ P K+ ++A G + EK +HV+KGC RG V Sbjct: 180 PQAVNAPAKSQMSAVGGRAAEKD-DHVDKGCCRGCV 214
>FLHA_BUCBP (Q89AN5) Flagellar biosynthesis protein flhA| Length = 702 Score = 30.8 bits (68), Expect = 3.5 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 11/56 (19%) Frame = -3 Query: 340 SRKAAGEEPLPEEDPSNPIFK--------PLPEPSRLEGYLVTNQ---ISSYCNHI 206 S A+G PLP E+ S+PIFK L ++ +GY + IS++ NHI Sbjct: 446 SGNASGPLPLPAEETSDPIFKFKSFWITSELINQAKQKGYNIAEDSTVISTHLNHI 501
>FX4L1_HUMAN (Q9NU39) Forkhead box protein D4-like 1| Length = 408 Score = 30.4 bits (67), Expect = 4.6 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -2 Query: 446 WSFIRAKQVPILLSQPRKATVTATGMASKEKAREHVEKGCWRGAVAR 306 WS+ Q P LS AT A+G +++ R H +G R V R Sbjct: 349 WSYCPLLQRPSSLSDNFAATAAASGGGLRQRLRSHQGRGAGRAPVGR 395
>CMTA2_MOUSE (Q80Y50) Calmodulin-binding transcription activator 2| Length = 1208 Score = 30.0 bits (66), Expect = 6.0 Identities = 25/94 (26%), Positives = 42/94 (44%) Frame = -3 Query: 430 QNKFQYYYRNLGRQQSQQQAWLQKRRQENMSRKAAGEEPLPEEDPSNPIFKPLPEPSRLE 251 Q+KF+ YY QQS++ A L ++ + R+ P P PS P+ P+R + Sbjct: 1115 QSKFRSYYEQKRFQQSRRAAVLIQQHYRSYRRR-----PGPPHRPSGPL------PARNK 1163 Query: 250 GYLVTNQISSYCNHINGVAGQSFNRLYLMKALQE 149 G +T + I + +R+ +K QE Sbjct: 1164 GTFLTKKQDQAARKIMRFLRRCRHRMRELKQNQE 1197
>CJ084_PONPY (Q5R939) Protein C10orf84 homolog| Length = 233 Score = 30.0 bits (66), Expect = 6.0 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = -3 Query: 481 ERNLEFMIGCMDGLSSEQ-NKFQYYYRNLGRQQSQQQAWLQKRRQENMSRKAAGEEPLPE 305 E N+ C G+ + NKFQ ++ Q+S + KRR+ + K E+ L Sbjct: 59 ESNVNAYEECPSGIPIDMWNKFQELHKKHSEQKSTTSRFRGKRRKRSRKDKLKNEKELHS 118 Query: 304 EDPSN 290 E SN Sbjct: 119 EPSSN 123
>CJ084_HUMAN (Q9H8W3) Protein C10orf84| Length = 233 Score = 30.0 bits (66), Expect = 6.0 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = -3 Query: 481 ERNLEFMIGCMDGLSSEQ-NKFQYYYRNLGRQQSQQQAWLQKRRQENMSRKAAGEEPLPE 305 E N+ C G+ + NKFQ ++ Q+S + KRR+ + K E+ L Sbjct: 59 ESNVNAYEECPSGIPIDMWNKFQELHKKHSEQKSTTSRFRGKRRKRSRKDKLKNEKELHS 118 Query: 304 EDPSN 290 E SN Sbjct: 119 EPSSN 123 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,554,045 Number of Sequences: 219361 Number of extensions: 1976897 Number of successful extensions: 6502 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 6143 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6476 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
