ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal31a16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RIR1_ARATH (Q9SJ20) Ribonucleoside-diphosphate reductase large s... 32 1.7
2CD34_CANFA (Q28270) Hematopoietic progenitor cell antigen CD34 p... 30 8.7

>RIR1_ARATH (Q9SJ20) Ribonucleoside-diphosphate reductase large subunit (EC|
           1.17.4.1) (Ribonucleoside-diphosphate reductase R1
           subunit) (AtRNR1)
          Length = 816

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
 Frame = -3

Query: 659 DFGDFRFLHIKPKAVRYVSGVATAILGSGEFSAAEFKEAKVDPISQFSTPIAGHM-NKDH 483
           + G  +  ++  + + Y S   TA+      +   F   K  P+      +AG + +K+ 
Sbjct: 419 NLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDSHPPKLAGSLDSKNR 478

Query: 482 ADDTKLIVQHSTSVKVDFASIVDVD---------------SLGINVKAGYDGTVLKLRIP 348
             D + + + + +V V+   I+DV+                +GI V+   D  +L L +P
Sbjct: 479 YFDFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFIL-LGMP 537

Query: 347 F--PRRAQDRKDV-KTLIVEMLQAA 282
           F  P   Q  KD+ +T+    L+A+
Sbjct: 538 FDSPEAQQLNKDIFETIYYHALKAS 562



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>CD34_CANFA (Q28270) Hematopoietic progenitor cell antigen CD34 precursor|
          Length = 389

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 36  NSSVQIYKSLCISLSLTGSNAHKFAVTMEP 125
           NSSVQ   SL I++S T +N    +VT+EP
Sbjct: 107 NSSVQSQTSLAITVSFTPTNFSTSSVTLEP 136


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,609,981
Number of Sequences: 219361
Number of extensions: 1824365
Number of successful extensions: 4989
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4988
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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