ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal30l15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PDXS_HALMA (Q5V1G7) Pyridoxal biosynthesis lyase pdxS (EC 4.-.-.-) 28 5.0
2KISSR_HUMAN (Q969F8) KiSS-1 receptor (KiSS-1R) (Kisspeptins rece... 28 8.6

>PDXS_HALMA (Q5V1G7) Pyridoxal biosynthesis lyase pdxS (EC 4.-.-.-)|
          Length = 302

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 3/21 (14%)
 Frame = +3

Query: 123 GAVAIRH---APADVRRRGGV 176
           GAVA+ H    PAD+R+RGGV
Sbjct: 46  GAVAVMHLESVPADIRKRGGV 66



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>KISSR_HUMAN (Q969F8) KiSS-1 receptor (KiSS-1R) (Kisspeptins receptor) (Metastin|
           receptor) (G-protein coupled receptor 54)
           (Hypogonadotropin-1) (hOT7T175)
          Length = 398

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +3

Query: 123 GAVAIRHAPADVRRRGGVDAELPGAV 200
           G VA+R APAD   +G V AE  GAV
Sbjct: 232 GRVAVRPAPADSALQGQVLAERAGAV 257


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,278,102
Number of Sequences: 219361
Number of extensions: 327698
Number of successful extensions: 903
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 80,573,946
effective HSP length: 44
effective length of database: 70,922,062
effective search space used: 1702129488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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