Clone Information

BLAST Search Result

Clone Name	rbaal30k20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY108992.1\| Zea mays PCO062765 mRNA sequence	210	4e-51
2	ref\|NM_185970.1\| Oryza sativa (japonica cultivar-group), mRNA	194	2e-46
3	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	188	1e-44
4	dbj\|AP005184.5\| Oryza sativa (japonica cultivar-group) genomic D...	188	1e-44
5	ref\|XM_479396.1\| Oryza sativa (japonica cultivar-group), mRNA	168	1e-38
6	dbj\|AK060061.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	168	1e-38
7	dbj\|AP005182.5\| Oryza sativa (japonica cultivar-group) genomic D...	159	1e-35
8	ref\|NM_121375.3\| Arabidopsis thaliana unknown protein AT5G13720 ...	70	8e-09
9	ref\|NM_121376.2\| Arabidopsis thaliana SIGD (SIGMA-LIKE FACTOR 4)...	70	8e-09
10	gb\|AY150387.1\| Arabidopsis thaliana unknown protein (At5g13720) ...	70	8e-09
11	gb\|AY096494.1\| Arabidopsis thaliana unknown protein (At5g13720) ...	70	8e-09
12	dbj\|AB021119.1\| Arabidopsis thaliana sigD gene for RNA polymeras...	70	8e-09
13	dbj\|AB006704.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	70	8e-09
14	emb\|CT573502.2\| Medicago truncatula chromosome 5 clone mte1-69f2...	44	0.48
15	gb\|AC133874.10\| Mus musculus chromosome 19, clone RP23-81N16, co...	42	1.9
16	gb\|AC120416.11\| Mus musculus chromosome 1, clone RP24-472N18, co...	40	7.6
17	gb\|AE017350.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	7.6
18	ref\|XM_603414.2\| PREDICTED: Bos taurus similar to mitochondrial ...	40	7.6
19	ref\|XM_955005.1\| Neurospora crassa OR74A hypothetical protein (N...	40	7.6
20	ref\|XM_325692.1\| Neurospora crassa OR74A hypothetical protein (N...	40	7.6
21	gb\|AY814775.1\| Schistosoma japonicum SJCHGC09088 protein mRNA, c...	40	7.6
22	ref\|XM_567554.1\| Cryptococcus neoformans var. neoformans JEC21 h...	40	7.6
23	emb\|AL939125.1\|SCO939125 Streptomyces coelicolor A3(2) complete ...	40	7.6
24	emb\|AL939105.1\|SCO939105 Streptomyces coelicolor A3(2) complete ...	40	7.6
25	gb\|AC018600.6\| Homo sapiens, clone RP11-26L8, complete sequence	40	7.6
26	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	7.6
27	gb\|CP000254.1\| Methanospirillum hungatei JF-1, complete genome	40	7.6
28	gb\|AY747397.1\| Arachis hypogaea isolate PLTRP2B09 resistance pro...	40	7.6
29	gb\|AY747362.1\| Arachis hypogaea isolate PLTRP2B05 resistance pro...	40	7.6
30	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	7.6
31	gb\|AF255948.1\|AF255948 Physarum polycephalum LIG1 gene, partial cds	40	7.6
32	gb\|BT024054.1\| Zea mays clone EL01N0439D05 mRNA sequence	40	7.6
33	emb\|AL359397.3\|CNS05TE2 Human chromosome 14 DNA sequence BAC R-2...	40	7.6
34	gb\|AC113456.9\| Mus musculus chromosome 1, clone RP23-257E16, com...	40	7.6
35	emb\|AL606902.26\| Mouse DNA sequence from clone RP23-167A12 on ch...	40	7.6
36	emb\|AL645530.11\| Mouse DNA sequence from clone RP23-92N10 on chr...	40	7.6
37	emb\|AL645484.14\| Mouse DNA sequence from clone RP23-38A10 on chr...	40	7.6

>gb|AY108992.1| Zea mays PCO062765 mRNA sequence
          Length = 499

 Score =  210 bits (106), Expect = 4e-51
 Identities = 190/218 (87%)
 Strand = Plus / Minus

                                                                       
Query: 272 tgcaggatgtagagggaggccgaggagaggaagatgcagaccgagtagctgagcaggtcc 331
           |||||||||||||| || || || || | ||||||||||| |||||||||||| ||||||
Sbjct: 307 tgcaggatgtagagagaagctgacgacaagaagatgcagatcgagtagctgaggaggtcc 248

                                                                       
Query: 332 agccccgtggtgatcttcaccatcttgctccgctcgaacatcttcaccagcaggatcatc 391
           ||||||||||  ||| ||||||||||||||  ||||||||||||||| || || ||||||
Sbjct: 247 agccccgtggctatcgtcaccatcttgctcttctcgaacatcttcacaagtagaatcatc 188

                                                                       
Query: 392 acgatgacgtgcccaaccttggtcttgagctcgtccagggacgtgatcttcatccacttc 451
           |||||||||||||| || || |||||||||||||| || || ||||| ||||||||||||
Sbjct: 187 acgatgacgtgccccacttttgtcttgagctcgtcaagcgaggtgatgttcatccacttc 128

                                                 
Query: 452 ggcctctccttcagagcgaacatcccgaacagcgacga 489
           || |  ||||||| ||||||||||||||||| ||||||
Sbjct: 127 gggcgttccttcaaagcgaacatcccgaacaacgacga 90

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>ref|NM_185970.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 861

 Score =  194 bits (98), Expect = 2e-46
 Identities = 215/254 (84%)
 Strand = Plus / Minus

                                                                       
Query: 224 tacaagtggggcatcaccgactcctcgtgctcgggccggtggaggttatgcaggatgtag 283
           |||||||  ||||| ||||| || || || || |||| ||| ||||| ||||||||||| 
Sbjct: 860 tacaagtttggcataaccgagtcatcctgttcaggcctgtgaaggttgtgcaggatgtac 801

                                                                       
Query: 284 agggaggccgaggagaggaagatgcagaccgagtagctgagcaggtccagccccgtggtg 343
           || || || || || ||||||||||||||||||||||| |||||||||| |||||| || 
Sbjct: 800 agtgaagcggacgacaggaagatgcagaccgagtagctcagcaggtccaaccccgttgtt 741

                                                                       
Query: 344 atcttcaccatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgc 403
           ||||||||||| ||||||| |||||||||||||||||| |||||||| |||||||| |||
Sbjct: 740 atcttcaccattttgctcctctcgaacatcttcaccagaaggatcatgacgatgacatgc 681

                                                                       
Query: 404 ccaaccttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttc 463
           || || ||||| || || ||||||||||| || |||||||||||||| || || ||||| 
Sbjct: 680 cctactttggttttcagttcgtccagggaggtaatcttcatccactttggtctttccttt 621

                         
Query: 464 agagcgaacatccc 477
           | ||| ||||||||
Sbjct: 620 aaagcaaacatccc 607

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  188 bits (95), Expect = 1e-44
 Identities = 194/227 (85%)
 Strand = Plus / Minus

                                                                            
Query: 224      tacaagtggggcatcaccgactcctcgtgctcgggccggtggaggttatgcaggatgtag 283
                |||||||  ||||| ||||| || || || || |||| ||| ||||| ||||||||||| 
Sbjct: 27579477 tacaagtttggcataaccgagtcatcctgttcaggcctgtgaaggttgtgcaggatgtac 27579418

                                                                            
Query: 284      agggaggccgaggagaggaagatgcagaccgagtagctgagcaggtccagccccgtggtg 343
                || || || || || ||||||||||||||||||||||| |||||||||| |||||| || 
Sbjct: 27579417 agtgaagcggacgacaggaagatgcagaccgagtagctcagcaggtccaaccccgttgtt 27579358

                                                                            
Query: 344      atcttcaccatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgc 403
                ||||||||||| ||||||| |||||||||||||||||| |||||||| |||||||| |||
Sbjct: 27579357 atcttcaccattttgctcctctcgaacatcttcaccagaaggatcatgacgatgacatgc 27579298

                                                               
Query: 404      ccaaccttggtcttgagctcgtccagggacgtgatcttcatccactt 450
                || || ||||| || || ||||||||||| || ||||||||||||||
Sbjct: 27579297 cctactttggttttcagttcgtccagggaggtaatcttcatccactt 27579251



 Score =  159 bits (80), Expect = 1e-35
 Identities = 167/196 (85%)
 Strand = Plus / Minus

                                                                            
Query: 266      aggttatgcaggatgtagagggaggccgaggagaggaagatgcagaccgagtagctgagc 325
                ||||| ||||||||||| ||||| ||||| || | |||||||||||||| ||||||||||
Sbjct: 27576141 aggttgtgcaggatgtacagggaagccgacgacaagaagatgcagaccgcgtagctgagc 27576082

                                                                            
Query: 326      aggtccagccccgtggtgatcttcaccatcttgctccgctcgaacatcttcaccagcagg 385
                |||||||  ||||||||||| | |||||||||||||| |||||||||||||||||| || 
Sbjct: 27576081 aggtccattcccgtggtgatgtgcaccatcttgctcctctcgaacatcttcaccaggaga 27576022

                                                                            
Query: 386      atcatcacgatgacgtgcccaaccttggtcttgagctcgtccagggacgtgatcttcatc 445
                ||||||||||||| ||| || | ||| || |||||||| || || ||  ||||  |||||
Sbjct: 27576021 atcatcacgatgatgtggcccagcttcgttttgagctcatcgagagagctgattctcatc 27575962

                                
Query: 446      cacttcggcctctcct 461
                ||| |||| |||||||
Sbjct: 27575961 cacctcggtctctcct 27575946



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 536      ttgctgatgaacagcccgta 555
                ||||||||||||||||||||
Sbjct: 27578743 ttgctgatgaacagcccgta 27578724

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>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0047B07
          Length = 157797

 Score =  188 bits (95), Expect = 1e-44
 Identities = 194/227 (85%)
 Strand = Plus / Minus

                                                                         
Query: 224   tacaagtggggcatcaccgactcctcgtgctcgggccggtggaggttatgcaggatgtag 283
             |||||||  ||||| ||||| || || || || |||| ||| ||||| ||||||||||| 
Sbjct: 36470 tacaagtttggcataaccgagtcatcctgttcaggcctgtgaaggttgtgcaggatgtac 36411

                                                                         
Query: 284   agggaggccgaggagaggaagatgcagaccgagtagctgagcaggtccagccccgtggtg 343
             || || || || || ||||||||||||||||||||||| |||||||||| |||||| || 
Sbjct: 36410 agtgaagcggacgacaggaagatgcagaccgagtagctcagcaggtccaaccccgttgtt 36351

                                                                         
Query: 344   atcttcaccatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgc 403
             ||||||||||| ||||||| |||||||||||||||||| |||||||| |||||||| |||
Sbjct: 36350 atcttcaccattttgctcctctcgaacatcttcaccagaaggatcatgacgatgacatgc 36291

                                                            
Query: 404   ccaaccttggtcttgagctcgtccagggacgtgatcttcatccactt 450
             || || ||||| || || ||||||||||| || ||||||||||||||
Sbjct: 36290 cctactttggttttcagttcgtccagggaggtaatcttcatccactt 36244



 Score =  159 bits (80), Expect = 1e-35
 Identities = 167/196 (85%)
 Strand = Plus / Minus

                                                                         
Query: 266   aggttatgcaggatgtagagggaggccgaggagaggaagatgcagaccgagtagctgagc 325
             ||||| ||||||||||| ||||| ||||| || | |||||||||||||| ||||||||||
Sbjct: 33134 aggttgtgcaggatgtacagggaagccgacgacaagaagatgcagaccgcgtagctgagc 33075

                                                                         
Query: 326   aggtccagccccgtggtgatcttcaccatcttgctccgctcgaacatcttcaccagcagg 385
             |||||||  ||||||||||| | |||||||||||||| |||||||||||||||||| || 
Sbjct: 33074 aggtccattcccgtggtgatgtgcaccatcttgctcctctcgaacatcttcaccaggaga 33015

                                                                         
Query: 386   atcatcacgatgacgtgcccaaccttggtcttgagctcgtccagggacgtgatcttcatc 445
             ||||||||||||| ||| || | ||| || |||||||| || || ||  ||||  |||||
Sbjct: 33014 atcatcacgatgatgtggcccagcttcgttttgagctcatcgagagagctgattctcatc 32955

                             
Query: 446   cacttcggcctctcct 461
             ||| |||| |||||||
Sbjct: 32954 cacctcggtctctcct 32939



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 536   ttgctgatgaacagcccgta 555
             ||||||||||||||||||||
Sbjct: 35736 ttgctgatgaacagcccgta 35717

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>ref|XM_479396.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1073

 Score =  168 bits (85), Expect = 1e-38
 Identities = 178/209 (85%)
 Strand = Plus / Minus

                                                                       
Query: 266 aggttatgcaggatgtagagggaggccgaggagaggaagatgcagaccgagtagctgagc 325
           ||||| ||||||||||| ||||| ||||| || | |||||||||||||| ||||||||||
Sbjct: 843 aggttgtgcaggatgtacagggaagccgacgacaagaagatgcagaccgcgtagctgagc 784

                                                                       
Query: 326 aggtccagccccgtggtgatcttcaccatcttgctccgctcgaacatcttcaccagcagg 385
           |||||||  ||||||||||| | |||||||||||||| |||||||||||||||||| || 
Sbjct: 783 aggtccattcccgtggtgatgtgcaccatcttgctcctctcgaacatcttcaccaggaga 724

                                                                       
Query: 386 atcatcacgatgacgtgcccaaccttggtcttgagctcgtccagggacgtgatcttcatc 445
           ||||||||||||| ||| || | ||| || |||||||| || || ||  ||||  |||||
Sbjct: 723 atcatcacgatgatgtggcccagcttcgttttgagctcatcgagagagctgattctcatc 664

                                        
Query: 446 cacttcggcctctccttcagagcgaacat 474
           ||| |||| |||||||||| ||| |||||
Sbjct: 663 cacctcggtctctccttcaaagcaaacat 635

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>dbj|AK060061.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-F12, full
           insert sequence
          Length = 1073

 Score =  168 bits (85), Expect = 1e-38
 Identities = 178/209 (85%)
 Strand = Plus / Minus

                                                                       
Query: 266 aggttatgcaggatgtagagggaggccgaggagaggaagatgcagaccgagtagctgagc 325
           ||||| ||||||||||| ||||| ||||| || | |||||||||||||| ||||||||||
Sbjct: 843 aggttgtgcaggatgtacagggaagccgacgacaagaagatgcagaccgcgtagctgagc 784

                                                                       
Query: 326 aggtccagccccgtggtgatcttcaccatcttgctccgctcgaacatcttcaccagcagg 385
           |||||||  ||||||||||| | |||||||||||||| |||||||||||||||||| || 
Sbjct: 783 aggtccattcccgtggtgatgtgcaccatcttgctcctctcgaacatcttcaccaggaga 724

                                                                       
Query: 386 atcatcacgatgacgtgcccaaccttggtcttgagctcgtccagggacgtgatcttcatc 445
           ||||||||||||| ||| || | ||| || |||||||| || || ||  ||||  |||||
Sbjct: 723 atcatcacgatgatgtggcccagcttcgttttgagctcatcgagagagctgattctcatc 664

                                        
Query: 446 cacttcggcctctccttcagagcgaacat 474
           ||| |||| |||||||||| ||| |||||
Sbjct: 663 cacctcggtctctccttcaaagcaaacat 635

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>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0018C07
          Length = 141707

 Score =  159 bits (80), Expect = 1e-35
 Identities = 167/196 (85%)
 Strand = Plus / Minus

                                                                          
Query: 266    aggttatgcaggatgtagagggaggccgaggagaggaagatgcagaccgagtagctgagc 325
              ||||| ||||||||||| ||||| ||||| || | |||||||||||||| ||||||||||
Sbjct: 140112 aggttgtgcaggatgtacagggaagccgacgacaagaagatgcagaccgcgtagctgagc 140053

                                                                          
Query: 326    aggtccagccccgtggtgatcttcaccatcttgctccgctcgaacatcttcaccagcagg 385
              |||||||  ||||||||||| | |||||||||||||| |||||||||||||||||| || 
Sbjct: 140052 aggtccattcccgtggtgatgtgcaccatcttgctcctctcgaacatcttcaccaggaga 139993

                                                                          
Query: 386    atcatcacgatgacgtgcccaaccttggtcttgagctcgtccagggacgtgatcttcatc 445
              ||||||||||||| ||| || | ||| || |||||||| || || ||  ||||  |||||
Sbjct: 139992 atcatcacgatgatgtggcccagcttcgttttgagctcatcgagagagctgattctcatc 139933

                              
Query: 446    cacttcggcctctcct 461
              ||| |||| |||||||
Sbjct: 139932 cacctcggtctctcct 139917

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>ref|NM_121375.3| Arabidopsis thaliana unknown protein AT5G13720 mRNA, complete cds
          Length = 1012

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                       
Query: 350 accatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgcccaacc 409
           ||||||||||| | ||||||||||||||| ||||| ||||| || ||||| || || || 
Sbjct: 805 accatcttgcttctctcgaacatcttcactagcagaatcataacaatgacatgtcccact 746

                                                                  
Query: 410 ttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttca 464
           ||||| || ||||| || || ||  ||||||||||||| || || ||||||||||
Sbjct: 745 ttggttttaagctcatcaagtgagctgatcttcatccattttggtctctccttca 691

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>ref|NM_121376.2| Arabidopsis thaliana SIGD (SIGMA-LIKE FACTOR 4); DNA binding /
            DNA-directed RNA polymerase/ transcription factor
            AT5G13730 (SIGD) mRNA, complete cds
          Length = 1785

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 95/115 (82%)
 Strand = Plus / Plus

                                                                        
Query: 350  accatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgcccaacc 409
            ||||||||||| | ||||||||||||||| ||||| ||||| || ||||| || || || 
Sbjct: 1556 accatcttgcttctctcgaacatcttcactagcagaatcataacaatgacatgtcccact 1615

                                                                   
Query: 410  ttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttca 464
            ||||| || ||||| || || ||  ||||||||||||| || || ||||||||||
Sbjct: 1616 ttggttttaagctcatcaagtgagctgatcttcatccattttggtctctccttca 1670

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>gb|AY150387.1| Arabidopsis thaliana unknown protein (At5g13720) mRNA, complete cds
          Length = 820

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                       
Query: 350 accatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgcccaacc 409
           ||||||||||| | ||||||||||||||| ||||| ||||| || ||||| || || || 
Sbjct: 686 accatcttgcttctctcgaacatcttcactagcagaatcataacaatgacatgtcccact 627

                                                                  
Query: 410 ttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttca 464
           ||||| || ||||| || || ||  ||||||||||||| || || ||||||||||
Sbjct: 626 ttggttttaagctcatcaagtgagctgatcttcatccattttggtctctccttca 572

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>gb|AY096494.1| Arabidopsis thaliana unknown protein (At5g13720) mRNA, complete cds
          Length = 974

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                       
Query: 350 accatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgcccaacc 409
           ||||||||||| | ||||||||||||||| ||||| ||||| || ||||| || || || 
Sbjct: 805 accatcttgcttctctcgaacatcttcactagcagaatcataacaatgacatgtcccact 746

                                                                  
Query: 410 ttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttca 464
           ||||| || ||||| || || ||  ||||||||||||| || || ||||||||||
Sbjct: 745 ttggttttaagctcatcaagtgagctgatcttcatccattttggtctctccttca 691

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>dbj|AB021119.1| Arabidopsis thaliana sigD gene for RNA polymerase sigma subunit SigD
            and spliced variant SigD*, complete cds
          Length = 2975

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 95/115 (82%)
 Strand = Plus / Plus

                                                                        
Query: 350  accatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgcccaacc 409
            ||||||||||| | ||||||||||||||| ||||| ||||| || ||||| || || || 
Sbjct: 2337 accatcttgcttctctcgaacatcttcactagcagaatcataacaatgacatgtcccact 2396

                                                                   
Query: 410  ttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttca 464
            ||||| || ||||| || || ||  ||||||||||||| || || ||||||||||
Sbjct: 2397 ttggttttaagctcatcaagtgagctgatcttcatccattttggtctctccttca 2451

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>dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSH12
          Length = 79259

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                         
Query: 350   accatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgcccaacc 409
             ||||||||||| | ||||||||||||||| ||||| ||||| || ||||| || || || 
Sbjct: 72132 accatcttgcttctctcgaacatcttcactagcagaatcataacaatgacatgtcccact 72073

                                                                    
Query: 410   ttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttca 464
             ||||| || ||||| || || ||  ||||||||||||| || || ||||||||||
Sbjct: 72072 ttggttttaagctcatcaagtgagctgatcttcatccattttggtctctccttca 72018

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>emb|CT573502.2| Medicago truncatula chromosome 5 clone mte1-69f21, COMPLETE SEQUENCE
          Length = 89977

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 2    ttttgtgctatatgaatgtttt 23
            ||||||||||||||||||||||
Sbjct: 7685 ttttgtgctatatgaatgtttt 7706

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>gb|AC133874.10| Mus musculus chromosome 19, clone RP23-81N16, complete sequence
          Length = 215113

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 283    gagggaggccgaggagaggaagatg 307
              |||||||| ||||||||||||||||
Sbjct: 178263 gagggaggtcgaggagaggaagatg 178239

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>gb|AC120416.11| Mus musculus chromosome 1, clone RP24-472N18, complete sequence
          Length = 199727

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 284   agggaggccgaggagaggaagatg 307
             ||||||||||||| ||||||||||
Sbjct: 22277 agggaggccgaggggaggaagatg 22300

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>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete
              sequence
          Length = 1085720

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 441    tcatccacttcggcctctcc 460
              ||||||||||||||||||||
Sbjct: 764020 tcatccacttcggcctctcc 764039

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>ref|XM_603414.2| PREDICTED: Bos taurus similar to mitochondrial protein 18 kDa
           isoform a (LOC525071), mRNA
          Length = 1123

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 caggatgtagagggaggccg 293
           ||||||||||||||||||||
Sbjct: 420 caggatgtagagggaggccg 401

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>ref|XM_955005.1| Neurospora crassa OR74A hypothetical protein (NCU05838.1) partial
            mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 286  ggaggccgaggagaggaaga 305
            ||||||||||||||||||||
Sbjct: 993  ggaggccgaggagaggaaga 1012

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>ref|XM_325692.1| Neurospora crassa OR74A hypothetical protein (NCU05838.1) partial
            mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 286  ggaggccgaggagaggaaga 305
            ||||||||||||||||||||
Sbjct: 993  ggaggccgaggagaggaaga 1012

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>gb|AY814775.1| Schistosoma japonicum SJCHGC09088 protein mRNA, complete cds
          Length = 745

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 10  tatatgaatgttttgaataa 29
           ||||||||||||||||||||
Sbjct: 585 tatatgaatgttttgaataa 604

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>ref|XM_567554.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNJ02640) partial mRNA
          Length = 809

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 441 tcatccacttcggcctctcc 460
           ||||||||||||||||||||
Sbjct: 698 tcatccacttcggcctctcc 679

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>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 421    ctcgtccagggacgtgatct 440
              ||||||||||||||||||||
Sbjct: 142451 ctcgtccagggacgtgatct 142470

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>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29
          Length = 291000

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   ctcctcgtgctcgggccggt 263
             ||||||||||||||||||||
Sbjct: 66240 ctcctcgtgctcgggccggt 66259

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>gb|AC018600.6| Homo sapiens, clone RP11-26L8, complete sequence
          Length = 159469

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    atgaatgttttgaataaagt 32
             ||||||||||||||||||||
Sbjct: 17300 atgaatgttttgaataaagt 17281

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 92      aaccggtcgaccaccgcgca 111
               ||||||||||||||||||||
Sbjct: 2393304 aaccggtcgaccaccgcgca 2393323

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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 434     gtgatcttcatccacttcgg 453
               ||||||||||||||||||||
Sbjct: 3355402 gtgatcttcatccacttcgg 3355421

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>gb|AY747397.1| Arachis hypogaea isolate PLTRP2B09 resistance protein PLTR gene,
           partial cds
          Length = 529

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 10  tatatgaatgttttgaataaagtt 33
           |||| |||||||||||||||||||
Sbjct: 460 tataagaatgttttgaataaagtt 483

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>gb|AY747362.1| Arachis hypogaea isolate PLTRP2B05 resistance protein PLTR gene,
           partial cds
          Length = 529

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 10  tatatgaatgttttgaataaagtt 33
           |||| |||||||||||||||||||
Sbjct: 460 tataagaatgttttgaataaagtt 483

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 421     ctcgtccagggacgtgatct 440
               ||||||||||||||||||||
Sbjct: 2919304 ctcgtccagggacgtgatct 2919285

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>gb|AF255948.1|AF255948 Physarum polycephalum LIG1 gene, partial cds
          Length = 1654

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 1   attttgtgctatatgaatgttttg 24
           |||||||||||||| |||||||||
Sbjct: 308 attttgtgctatattaatgttttg 285

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>gb|BT024054.1| Zea mays clone EL01N0439D05 mRNA sequence
          Length = 1966

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 286  ggaggccgaggagaggaaga 305
            ||||||||||||||||||||
Sbjct: 1307 ggaggccgaggagaggaaga 1326

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>emb|AL359397.3|CNS05TE2 Human chromosome 14 DNA sequence BAC R-247L20 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 168193

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 17    atgttttgaataaagttcttcctt 40
             |||||||||||||||| |||||||
Sbjct: 35838 atgttttgaataaagtccttcctt 35815

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>gb|AC113456.9| Mus musculus chromosome 1, clone RP23-257E16, complete sequence
          Length = 174902

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 284    agggaggccgaggagaggaagatg 307
              ||||||||||||| ||||||||||
Sbjct: 101457 agggaggccgaggggaggaagatg 101434

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>emb|AL606902.26| Mouse DNA sequence from clone RP23-167A12 on chromosome 4, complete
            sequence
          Length = 100421

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 271  atgcaggatgtagagggagg 290
            ||||||||||||||||||||
Sbjct: 7833 atgcaggatgtagagggagg 7814

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>emb|AL645530.11| Mouse DNA sequence from clone RP23-92N10 on chromosome 11, complete
             sequence
          Length = 91481

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 442   catccacttcggcctctcct 461
             ||||||||||||||||||||
Sbjct: 91016 catccacttcggcctctcct 91035

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>emb|AL645484.14| Mouse DNA sequence from clone RP23-38A10 on chromosome 11, complete
            sequence
          Length = 161787

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 442  catccacttcggcctctcct 461
            ||||||||||||||||||||
Sbjct: 1535 catccacttcggcctctcct 1554


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,326,121
Number of Sequences: 3902068
Number of extensions: 4326121
Number of successful extensions: 85309
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85066
Number of HSP's gapped (non-prelim): 243
length of query: 558
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 535
effective length of database: 17,143,297,704
effective search space: 9171664271640
effective search space used: 9171664271640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result