ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal30k13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_197290.1| Oryza sativa (japonica cultivar-group) unknown ... 133 3e-28
2gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 gen... 133 3e-28
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 133 3e-28
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 133 3e-28
5gb|AC124484.5| Mus musculus BAC clone RP24-128N20 from chromosom... 42 0.77
6gb|AC126047.3| Mus musculus BAC clone RP23-195C14 from X, comple... 42 0.77
7emb|AL358235.16| Human DNA sequence from clone RP11-196N24 on ch... 42 0.77
8emb|AL356113.8| Human DNA sequence from clone RP11-429A24 on chr... 42 0.77
9gb|AC124351.3| Mus musculus BAC clone RP24-467D20 from chromosom... 42 0.77
10emb|AL929409.5| Mouse DNA sequence from clone RP23-402H11 on chr... 42 0.77
11gb|AC063961.10| Homo sapiens chromosome 10 clone RP11-183E9, com... 42 0.77
12emb|BX544883.7| Mouse DNA sequence from clone RP23-302B23 on chr... 42 0.77
13emb|AL731822.31| Mouse DNA sequence from clone RP23-105H6 on chr... 42 0.77
14ref|XM_638285.1| Dictyostelium discoideum hypothetical protein (... 40 3.0
15gb|AC114649.9| Mus musculus chromosome 5, clone RP24-150M14, com... 40 3.0
16ref|XM_361229.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 3.0
17emb|CR628324.7| Zebrafish DNA sequence from clone CH211-191A3 in... 40 3.0
18emb|CR383676.21| Zebrafish DNA sequence from clone CH211-276I12 ... 40 3.0
19emb|BX088646.21| Zebrafish DNA sequence from clone DKEY-42F19 in... 40 3.0
20gb|AC018950.9| Homo sapiens chromosome 15, clone RP11-200K22, co... 40 3.0
21gb|AC153361.5| Mus musculus BAC clone RP23-291L20 from chromosom... 40 3.0
22dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
23gb|AF497611.1| Homo sapiens 15q11-q13 clone p112H21CpG-M1 genomi... 40 3.0
24gb|AC061965.16| Homo sapiens chromosome 15, clone RP11-37J13, co... 40 3.0
25dbj|AP004988.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
26emb|CR956419.6| Pig DNA sequence from clone CH242-148M18 on chro... 40 3.0

>ref|NM_197290.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBb0091N21.35), mRNA
          Length = 646

 Score =  133 bits (67), Expect = 3e-28
 Identities = 98/109 (89%)
 Strand = Plus / Minus

                                                                       
Query: 86  aaaagaggtngggctcttgtgaaaacaaaaactccaccaccaccaactgaacgccccagg 145
           ||||||||  | ||||||||||||| ||||||||| ||||||||||| || |||||||||
Sbjct: 331 aaaagaggctgtgctcttgtgaaaataaaaactcctccaccaccaaccgatcgccccagg 272

                                                            
Query: 146 agcatatcacggtcaaggtaagaaagatagtatagtcctncaggtgatc 194
           |||||||| |||||||||||||||||||| ||||||||| | |||||||
Sbjct: 271 agcatatcgcggtcaaggtaagaaagataatatagtcctccgggtgatc 223



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>gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete
             sequence
          Length = 151991

 Score =  133 bits (67), Expect = 3e-28
 Identities = 98/109 (89%)
 Strand = Plus / Plus

                                                                         
Query: 86    aaaagaggtngggctcttgtgaaaacaaaaactccaccaccaccaactgaacgccccagg 145
             ||||||||  | ||||||||||||| ||||||||| ||||||||||| || |||||||||
Sbjct: 32812 aaaagaggctgtgctcttgtgaaaataaaaactcctccaccaccaaccgatcgccccagg 32871

                                                              
Query: 146   agcatatcacggtcaaggtaagaaagatagtatagtcctncaggtgatc 194
             |||||||| |||||||||||||||||||| ||||||||| | |||||||
Sbjct: 32872 agcatatcgcggtcaaggtaagaaagataatatagtcctccgggtgatc 32920



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  133 bits (67), Expect = 3e-28
 Identities = 98/109 (89%)
 Strand = Plus / Minus

                                                                            
Query: 86       aaaagaggtngggctcttgtgaaaacaaaaactccaccaccaccaactgaacgccccagg 145
                ||||||||  | ||||||||||||| ||||||||| ||||||||||| || |||||||||
Sbjct: 19045852 aaaagaggctgtgctcttgtgaaaataaaaactcctccaccaccaaccgatcgccccagg 19045793

                                                                 
Query: 146      agcatatcacggtcaaggtaagaaagatagtatagtcctncaggtgatc 194
                |||||||| |||||||||||||||||||| ||||||||| | |||||||
Sbjct: 19045792 agcatatcgcggtcaaggtaagaaagataatatagtcctccgggtgatc 19045744



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  133 bits (67), Expect = 3e-28
 Identities = 98/109 (89%)
 Strand = Plus / Minus

                                                                            
Query: 86       aaaagaggtngggctcttgtgaaaacaaaaactccaccaccaccaactgaacgccccagg 145
                ||||||||  | ||||||||||||| ||||||||| ||||||||||| || |||||||||
Sbjct: 19057106 aaaagaggctgtgctcttgtgaaaataaaaactcctccaccaccaaccgatcgccccagg 19057047

                                                                 
Query: 146      agcatatcacggtcaaggtaagaaagatagtatagtcctncaggtgatc 194
                |||||||| |||||||||||||||||||| ||||||||| | |||||||
Sbjct: 19057046 agcatatcgcggtcaaggtaagaaagataatatagtcctccgggtgatc 19056998



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>gb|AC124484.5| Mus musculus BAC clone RP24-128N20 from chromosome 12, complete sequence
          Length = 204507

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 107    aaaacaaaaactccaccaccaccaa 131
              ||||||||||| |||||||||||||
Sbjct: 153995 aaaacaaaaacaccaccaccaccaa 153971



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>gb|AC126047.3| Mus musculus BAC clone RP23-195C14 from X, complete sequence
          Length = 193191

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 108   aaacaaaaactccaccaccaccaac 132
             |||||||||| ||||||||||||||
Sbjct: 62574 aaacaaaaacaccaccaccaccaac 62598



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>emb|AL358235.16| Human DNA sequence from clone RP11-196N24 on chromosome 10 Contains the
             5' end of the gene for a novel protein (possible ortholog
             of mouse phosphoinositide-3-kinase adaptor protein 1
             (Pik3ap1)), the ribosomal protein L13a pseudogene 5
             (RPL13AP5) and a CpG island, complete sequence
          Length = 106506

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 106   gaaaacaaaaactccaccaccacca 130
             ||||| |||||||||||||||||||
Sbjct: 90971 gaaaaaaaaaactccaccaccacca 90995



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>emb|AL356113.8| Human DNA sequence from clone RP11-429A24 on chromosome 10 Contains
             part of a novel gene (DKFZp761L0424) (KIAA1217) and three
             novel genes (FLJ11983 FLJ14139), complete sequence
          Length = 190429

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 108   aaacaaaaactccaccaccaccaac 132
             |||||||||| ||||||||||||||
Sbjct: 41851 aaacaaaaacaccaccaccaccaac 41827



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>gb|AC124351.3| Mus musculus BAC clone RP24-467D20 from chromosome 8, complete sequence
          Length = 122811

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 107   aaaacaaaaactccaccaccaccaa 131
             ||||||||||| |||||||||||||
Sbjct: 37975 aaaacaaaaacaccaccaccaccaa 37951



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>emb|AL929409.5| Mouse DNA sequence from clone RP23-402H11 on chromosome 4 Contains the 3'
              end of the Cdk5rap2 gene for CDK5 regulatory subunit
              associated protein 2 and the gene for a novel protein
              identical to tyrosine 3-monooxygenase/tryptophan
              5-monooxygenase activation protein theta Ywhaq, complete
              sequence
          Length = 147628

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 106    gaaaacaaaaactccaccaccacca 130
              |||||||||||| ||||||||||||
Sbjct: 131250 gaaaacaaaaacaccaccaccacca 131274



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>gb|AC063961.10| Homo sapiens chromosome 10 clone RP11-183E9, complete sequence
          Length = 147202

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 108   aaacaaaaactccaccaccaccaac 132
             |||||||||| ||||||||||||||
Sbjct: 21538 aaacaaaaacaccaccaccaccaac 21562



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>emb|BX544883.7| Mouse DNA sequence from clone RP23-302B23 on chromosome X, complete
              sequence
          Length = 133236

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 108    aaacaaaaactccaccaccaccaac 132
              |||||||||| ||||||||||||||
Sbjct: 107029 aaacaaaaacaccaccaccaccaac 107053



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>emb|AL731822.31| Mouse DNA sequence from clone RP23-105H6 on chromosome 2, complete
              sequence
          Length = 218037

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 108    aaacaaaaactccaccaccaccaac 132
              |||||||||| ||||||||||||||
Sbjct: 163366 aaacaaaaacaccaccaccaccaac 163342



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>ref|XM_638285.1| Dictyostelium discoideum hypothetical protein (DDB0203538), partial
            mRNA
          Length = 2100

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 114  aaactccaccaccaccaact 133
            ||||||||||||||||||||
Sbjct: 1591 aaactccaccaccaccaact 1572



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>gb|AC114649.9| Mus musculus chromosome 5, clone RP24-150M14, complete sequence
          Length = 154765

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 100    tcttgtgaaaacaaaaactccaccacca 127
              ||||||||||||||||||| ||| ||||
Sbjct: 134655 tcttgtgaaaacaaaaacttcacaacca 134628



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>ref|XM_361229.1| Magnaporthe grisea 70-15 hypothetical protein (MG10912.4) partial
            mRNA
          Length = 7863

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  caaaaactccaccaccacca 130
            ||||||||||||||||||||
Sbjct: 2793 caaaaactccaccaccacca 2812



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>emb|CR628324.7| Zebrafish DNA sequence from clone CH211-191A3 in linkage group 17,
             complete sequence
          Length = 79534

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   ttgtgaaaacaaaaactcca 121
             ||||||||||||||||||||
Sbjct: 74667 ttgtgaaaacaaaaactcca 74648



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>emb|CR383676.21| Zebrafish DNA sequence from clone CH211-276I12 in linkage group 14,
             complete sequence
          Length = 164241

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ctcttgtgaaaacaaaaact 118
             ||||||||||||||||||||
Sbjct: 14177 ctcttgtgaaaacaaaaact 14196



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>emb|BX088646.21| Zebrafish DNA sequence from clone DKEY-42F19 in linkage group 14,
              complete sequence
          Length = 235682

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    ttgtgaaaacaaaaactcca 121
              ||||||||||||||||||||
Sbjct: 108406 ttgtgaaaacaaaaactcca 108387



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>gb|AC018950.9| Homo sapiens chromosome 15, clone RP11-200K22, complete sequence
          Length = 159729

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 109   aacaaaaactccaccaccaccaactgaa 136
             ||||||||||||||||| | ||||||||
Sbjct: 45749 aacaaaaactccaccacgaacaactgaa 45776



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>gb|AC153361.5| Mus musculus BAC clone RP23-291L20 from chromosome 10, complete sequence
          Length = 212761

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 107    aaaacaaaaactccaccaccacca 130
              ||||||||||| ||||||||||||
Sbjct: 163474 aaaacaaaaacaccaccaccacca 163451



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 97       ggctcttgtgaaaacaaaaa 116
                ||||||||||||||||||||
Sbjct: 25375317 ggctcttgtgaaaacaaaaa 25375336



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>gb|AF497611.1| Homo sapiens 15q11-q13 clone p112H21CpG-M1 genomic sequence
          Length = 1621

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 107  aaaacaaaaactccaccaccacca 130
            ||||||||||| ||||||||||||
Sbjct: 1505 aaaacaaaaacgccaccaccacca 1482



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>gb|AC061965.16| Homo sapiens chromosome 15, clone RP11-37J13, complete sequence
          Length = 169399

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 107   aaaacaaaaactccaccaccacca 130
             ||||||||||| ||||||||||||
Sbjct: 31728 aaaacaaaaacgccaccaccacca 31705



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>dbj|AP004988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1056G08
          Length = 168173

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    ggctcttgtgaaaacaaaaa 116
             ||||||||||||||||||||
Sbjct: 68407 ggctcttgtgaaaacaaaaa 68426



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>emb|CR956419.6| Pig DNA sequence from clone CH242-148M18 on chromosome 17, complete
             sequence
          Length = 90759

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   actccaccaccaccaactga 135
             ||||||||||||||||||||
Sbjct: 44579 actccaccaccaccaactga 44560


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,224,532
Number of Sequences: 3902068
Number of extensions: 2224532
Number of successful extensions: 46186
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46085
Number of HSP's gapped (non-prelim): 101
length of query: 236
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 214
effective length of database: 17,147,199,772
effective search space: 3669500751208
effective search space used: 3669500751208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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