| Clone Name | rbaal30k13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197290.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBb0091N21.35), mRNA Length = 646 Score = 133 bits (67), Expect = 3e-28 Identities = 98/109 (89%) Strand = Plus / Minus Query: 86 aaaagaggtngggctcttgtgaaaacaaaaactccaccaccaccaactgaacgccccagg 145 |||||||| | ||||||||||||| ||||||||| ||||||||||| || ||||||||| Sbjct: 331 aaaagaggctgtgctcttgtgaaaataaaaactcctccaccaccaaccgatcgccccagg 272 Query: 146 agcatatcacggtcaaggtaagaaagatagtatagtcctncaggtgatc 194 |||||||| |||||||||||||||||||| ||||||||| | ||||||| Sbjct: 271 agcatatcgcggtcaaggtaagaaagataatatagtcctccgggtgatc 223
>gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete sequence Length = 151991 Score = 133 bits (67), Expect = 3e-28 Identities = 98/109 (89%) Strand = Plus / Plus Query: 86 aaaagaggtngggctcttgtgaaaacaaaaactccaccaccaccaactgaacgccccagg 145 |||||||| | ||||||||||||| ||||||||| ||||||||||| || ||||||||| Sbjct: 32812 aaaagaggctgtgctcttgtgaaaataaaaactcctccaccaccaaccgatcgccccagg 32871 Query: 146 agcatatcacggtcaaggtaagaaagatagtatagtcctncaggtgatc 194 |||||||| |||||||||||||||||||| ||||||||| | ||||||| Sbjct: 32872 agcatatcgcggtcaaggtaagaaagataatatagtcctccgggtgatc 32920
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 133 bits (67), Expect = 3e-28 Identities = 98/109 (89%) Strand = Plus / Minus Query: 86 aaaagaggtngggctcttgtgaaaacaaaaactccaccaccaccaactgaacgccccagg 145 |||||||| | ||||||||||||| ||||||||| ||||||||||| || ||||||||| Sbjct: 19045852 aaaagaggctgtgctcttgtgaaaataaaaactcctccaccaccaaccgatcgccccagg 19045793 Query: 146 agcatatcacggtcaaggtaagaaagatagtatagtcctncaggtgatc 194 |||||||| |||||||||||||||||||| ||||||||| | ||||||| Sbjct: 19045792 agcatatcgcggtcaaggtaagaaagataatatagtcctccgggtgatc 19045744
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 133 bits (67), Expect = 3e-28 Identities = 98/109 (89%) Strand = Plus / Minus Query: 86 aaaagaggtngggctcttgtgaaaacaaaaactccaccaccaccaactgaacgccccagg 145 |||||||| | ||||||||||||| ||||||||| ||||||||||| || ||||||||| Sbjct: 19057106 aaaagaggctgtgctcttgtgaaaataaaaactcctccaccaccaaccgatcgccccagg 19057047 Query: 146 agcatatcacggtcaaggtaagaaagatagtatagtcctncaggtgatc 194 |||||||| |||||||||||||||||||| ||||||||| | ||||||| Sbjct: 19057046 agcatatcgcggtcaaggtaagaaagataatatagtcctccgggtgatc 19056998
>gb|AC124484.5| Mus musculus BAC clone RP24-128N20 from chromosome 12, complete sequence Length = 204507 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 aaaacaaaaactccaccaccaccaa 131 ||||||||||| ||||||||||||| Sbjct: 153995 aaaacaaaaacaccaccaccaccaa 153971
>gb|AC126047.3| Mus musculus BAC clone RP23-195C14 from X, complete sequence Length = 193191 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 108 aaacaaaaactccaccaccaccaac 132 |||||||||| |||||||||||||| Sbjct: 62574 aaacaaaaacaccaccaccaccaac 62598
>emb|AL358235.16| Human DNA sequence from clone RP11-196N24 on chromosome 10 Contains the 5' end of the gene for a novel protein (possible ortholog of mouse phosphoinositide-3-kinase adaptor protein 1 (Pik3ap1)), the ribosomal protein L13a pseudogene 5 (RPL13AP5) and a CpG island, complete sequence Length = 106506 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 106 gaaaacaaaaactccaccaccacca 130 ||||| ||||||||||||||||||| Sbjct: 90971 gaaaaaaaaaactccaccaccacca 90995
>emb|AL356113.8| Human DNA sequence from clone RP11-429A24 on chromosome 10 Contains part of a novel gene (DKFZp761L0424) (KIAA1217) and three novel genes (FLJ11983 FLJ14139), complete sequence Length = 190429 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Minus Query: 108 aaacaaaaactccaccaccaccaac 132 |||||||||| |||||||||||||| Sbjct: 41851 aaacaaaaacaccaccaccaccaac 41827
>gb|AC124351.3| Mus musculus BAC clone RP24-467D20 from chromosome 8, complete sequence Length = 122811 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 aaaacaaaaactccaccaccaccaa 131 ||||||||||| ||||||||||||| Sbjct: 37975 aaaacaaaaacaccaccaccaccaa 37951
>emb|AL929409.5| Mouse DNA sequence from clone RP23-402H11 on chromosome 4 Contains the 3' end of the Cdk5rap2 gene for CDK5 regulatory subunit associated protein 2 and the gene for a novel protein identical to tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta Ywhaq, complete sequence Length = 147628 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 106 gaaaacaaaaactccaccaccacca 130 |||||||||||| |||||||||||| Sbjct: 131250 gaaaacaaaaacaccaccaccacca 131274
>gb|AC063961.10| Homo sapiens chromosome 10 clone RP11-183E9, complete sequence Length = 147202 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 108 aaacaaaaactccaccaccaccaac 132 |||||||||| |||||||||||||| Sbjct: 21538 aaacaaaaacaccaccaccaccaac 21562
>emb|BX544883.7| Mouse DNA sequence from clone RP23-302B23 on chromosome X, complete sequence Length = 133236 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 108 aaacaaaaactccaccaccaccaac 132 |||||||||| |||||||||||||| Sbjct: 107029 aaacaaaaacaccaccaccaccaac 107053
>emb|AL731822.31| Mouse DNA sequence from clone RP23-105H6 on chromosome 2, complete sequence Length = 218037 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Minus Query: 108 aaacaaaaactccaccaccaccaac 132 |||||||||| |||||||||||||| Sbjct: 163366 aaacaaaaacaccaccaccaccaac 163342
>ref|XM_638285.1| Dictyostelium discoideum hypothetical protein (DDB0203538), partial mRNA Length = 2100 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 aaactccaccaccaccaact 133 |||||||||||||||||||| Sbjct: 1591 aaactccaccaccaccaact 1572
>gb|AC114649.9| Mus musculus chromosome 5, clone RP24-150M14, complete sequence Length = 154765 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 100 tcttgtgaaaacaaaaactccaccacca 127 ||||||||||||||||||| ||| |||| Sbjct: 134655 tcttgtgaaaacaaaaacttcacaacca 134628
>ref|XM_361229.1| Magnaporthe grisea 70-15 hypothetical protein (MG10912.4) partial mRNA Length = 7863 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 caaaaactccaccaccacca 130 |||||||||||||||||||| Sbjct: 2793 caaaaactccaccaccacca 2812
>emb|CR628324.7| Zebrafish DNA sequence from clone CH211-191A3 in linkage group 17, complete sequence Length = 79534 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ttgtgaaaacaaaaactcca 121 |||||||||||||||||||| Sbjct: 74667 ttgtgaaaacaaaaactcca 74648
>emb|CR383676.21| Zebrafish DNA sequence from clone CH211-276I12 in linkage group 14, complete sequence Length = 164241 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ctcttgtgaaaacaaaaact 118 |||||||||||||||||||| Sbjct: 14177 ctcttgtgaaaacaaaaact 14196
>emb|BX088646.21| Zebrafish DNA sequence from clone DKEY-42F19 in linkage group 14, complete sequence Length = 235682 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ttgtgaaaacaaaaactcca 121 |||||||||||||||||||| Sbjct: 108406 ttgtgaaaacaaaaactcca 108387
>gb|AC018950.9| Homo sapiens chromosome 15, clone RP11-200K22, complete sequence Length = 159729 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 109 aacaaaaactccaccaccaccaactgaa 136 ||||||||||||||||| | |||||||| Sbjct: 45749 aacaaaaactccaccacgaacaactgaa 45776
>gb|AC153361.5| Mus musculus BAC clone RP23-291L20 from chromosome 10, complete sequence Length = 212761 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 107 aaaacaaaaactccaccaccacca 130 ||||||||||| |||||||||||| Sbjct: 163474 aaaacaaaaacaccaccaccacca 163451
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 ggctcttgtgaaaacaaaaa 116 |||||||||||||||||||| Sbjct: 25375317 ggctcttgtgaaaacaaaaa 25375336
>gb|AF497611.1| Homo sapiens 15q11-q13 clone p112H21CpG-M1 genomic sequence Length = 1621 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 107 aaaacaaaaactccaccaccacca 130 ||||||||||| |||||||||||| Sbjct: 1505 aaaacaaaaacgccaccaccacca 1482
>gb|AC061965.16| Homo sapiens chromosome 15, clone RP11-37J13, complete sequence Length = 169399 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 107 aaaacaaaaactccaccaccacca 130 ||||||||||| |||||||||||| Sbjct: 31728 aaaacaaaaacgccaccaccacca 31705
>dbj|AP004988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1056G08 Length = 168173 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 ggctcttgtgaaaacaaaaa 116 |||||||||||||||||||| Sbjct: 68407 ggctcttgtgaaaacaaaaa 68426
>emb|CR956419.6| Pig DNA sequence from clone CH242-148M18 on chromosome 17, complete sequence Length = 90759 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 actccaccaccaccaactga 135 |||||||||||||||||||| Sbjct: 44579 actccaccaccaccaactga 44560 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,224,532 Number of Sequences: 3902068 Number of extensions: 2224532 Number of successful extensions: 46186 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46085 Number of HSP's gapped (non-prelim): 101 length of query: 236 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 214 effective length of database: 17,147,199,772 effective search space: 3669500751208 effective search space used: 3669500751208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)