ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal30k12 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X83881.1|HCTTSAMDC H.chilense x T.turgidum conv. durum (Tritordeum) mRNA for S-adenosylmethionine decarboxylase Length = 1893 Score = 581 bits (293), Expect = e-163 Identities = 343/357 (96%), Gaps = 2/357 (0%) Strand = Plus / Minus Query: 1 attggtgggagaaaagagtcagaataaaattgcataaaaatcctaaactacgggaagggg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 419 attggtgggagaaaagagtcagaataaaattgcataaaaatcctaaactacgggaagggg 360 Query: 61 aaagccaaaaacgatatcaggatggcttcttcgcgcagtttgaatatgcagcagaaaact 120 || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 359 aa-gccaaaaacgatatcaggatggcttcttcgcgcagtttgagtatgcagcagaaaact 301 Query: 121 tctttgcgcctccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcgtaca 180 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 300 tcttggcgcctccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcgtaca 241 Query: 181 tcagggaactactactgctagactttttgccaccctttgactccattagaacattcacta 240 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 240 tcagggaactactactgctagacttcttgccaccctttgactccattagaacattcacta 181 Query: 241 agggttcctgggaaaaattggtatggtaaccccttcccgagcgcgcccacttgttccggt 300 ||| |||||||||||| ||| ||||||||||||||||||||||||| | |||| |||| | Sbjct: 180 aggattcctgggaaaatttgttatggtaaccccttcccgagcgcgcacgcttgatccgat 121 Query: 301 tccgatctcaagaattcccccctctcccgacacagatctcgagccctcccgacgagt 357 |||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| Sbjct: 120 tccgatctcaagaa-tcccccctctcccggcacagatctcgagctctcccgacgagt 65 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 387 atctggctgcggtggcggcggcgaggcggt 416 ||||||||||||||||||||||||| |||| Sbjct: 39 atctggctgcggtggcggcggcgagacggt 10
>gb|BT018615.1| Zea mays clone EL01N0501D02.d mRNA sequence Length = 2057 Score = 194 bits (98), Expect = 2e-46 Identities = 175/200 (87%), Gaps = 3/200 (1%) Strand = Plus / Minus Query: 38 aaatcctaaactacgggaaggggaaagccaaaaacgatatcaggatggcttcttcgcgca 97 |||||||||||||| ||| | | ||||||||| ||||||||||||||||||||||||| Sbjct: 416 aaatcctaaactactagaatgaggaagccaaaagggatatcaggatggcttcttcgcgca 357 Query: 98 gtttgaatatgcagcagaa---aacttctttgcgcctccagctggtcgaacgtcttcaat 154 ||| || || |||||||| |||||||| ||||||| || ||||||||||| ||||| Sbjct: 356 gttggagtaagcagcagactggaacttcttcacgcctccggcaggtcgaacgtcctcaat 297 Query: 155 gctgtagccgaggggagcttcgtacatcagggaactactactgctagactttttgccacc 214 ||||||||| ||||||||||| ||||||| ||||| |||||||||||||||||||||||| Sbjct: 296 gctgtagccaaggggagcttcatacatcatggaacgactactgctagactttttgccacc 237 Query: 215 ctttgactccattagaacat 234 ||| ||||||||||| |||| Sbjct: 236 cttagactccattagtacat 217
>emb|Y07767.1|ZMSADMEDC Z.mays mRNA for S-adenosylmethionine decarboxylase Length = 1873 Score = 186 bits (94), Expect = 4e-44 Identities = 174/200 (87%), Gaps = 3/200 (1%) Strand = Plus / Minus Query: 38 aaatcctaaactacgggaaggggaaagccaaaaacgatatcaggatggcttcttcgcgca 97 |||||||||||||| ||| | | ||||||||| ||||||||||||||||||||||||| Sbjct: 237 aaatcctaaactactagaatgaggaagccaaaagggatatcaggatggcttcttcgcgca 178 Query: 98 gtttgaatatgcagcagaa---aacttctttgcgcctccagctggtcgaacgtcttcaat 154 ||| || || |||||||| |||||||| ||||||| || ||||||||||| ||||| Sbjct: 177 gttggagtaagcagcagactggaacttcttcacgcctccggcaggtcgaacgtcctcaat 118 Query: 155 gctgtagccgaggggagcttcgtacatcagggaactactactgctagactttttgccacc 214 ||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||| Sbjct: 117 gctgtagccaaggggagcttcatacatcatagaacgactactgctagactttttgccacc 58 Query: 215 ctttgactccattagaacat 234 ||| ||||||||||| |||| Sbjct: 57 cttagactccattagtacat 38
>gb|AY103590.1| Zea mays PCO098412 mRNA sequence Length = 2400 Score = 186 bits (94), Expect = 4e-44 Identities = 174/200 (87%), Gaps = 3/200 (1%) Strand = Plus / Minus Query: 38 aaatcctaaactacgggaaggggaaagccaaaaacgatatcaggatggcttcttcgcgca 97 |||||||||||||| ||| | | ||||||||| ||||||||||||||||||||||||| Sbjct: 486 aaatcctaaactactagaatgaggaagccaaaagggatatcaggatggcttcttcgcgca 427 Query: 98 gtttgaatatgcagcagaa---aacttctttgcgcctccagctggtcgaacgtcttcaat 154 ||| || || |||||||| |||||||| ||||||| || ||||||||||| ||||| Sbjct: 426 gttggagtaagcagcagactggaacttcttcacgcctccggcaggtcgaacgtcctcaat 367 Query: 155 gctgtagccgaggggagcttcgtacatcagggaactactactgctagactttttgccacc 214 ||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||| Sbjct: 366 gctgtagccaaggggagcttcatacatcatagaacgactactgctagactttttgccacc 307 Query: 215 ctttgactccattagaacat 234 ||| ||||||||||| |||| Sbjct: 306 cttagactccattagtacat 287
>gb|BT016840.1| Zea mays clone Contig673 mRNA sequence Length = 1866 Score = 178 bits (90), Expect = 1e-41 Identities = 173/200 (86%), Gaps = 3/200 (1%) Strand = Plus / Plus Query: 38 aaatcctaaactacgggaaggggaaagccaaaaacgatatcaggatggcttcttcgcgca 97 |||||||||||||| ||| | | ||||||||| ||||||||||||||||||||||||| Sbjct: 1661 aaatcctaaactactagaatgaggaagccaaaagggatatcaggatggcttcttcgcgca 1720 Query: 98 gtttgaatatgcagcagaa---aacttctttgcgcctccagctggtcgaacgtcttcaat 154 ||| || || |||||||| |||||||| ||||||| || ||||||||||| ||||| Sbjct: 1721 gttggagtaagcagcagactggaacttcttcacgcctccggcaggtcgaacgtcctcaat 1780 Query: 155 gctgtagccgaggggagcttcgtacatcagggaactactactgctagactttttgccacc 214 ||||||||| ||||||||||| ||||||| ||||| ||||||||||| |||| ||||||| Sbjct: 1781 gctgtagccaaggggagcttcatacatcatggaacgactactgctagtctttatgccacc 1840 Query: 215 ctttgactccattagaacat 234 ||| ||||||||||| |||| Sbjct: 1841 cttagactccattagtacat 1860
>emb|Y07766.2|OSSADMEDC O.sativa mRNA for S-adenosylmethionine decarboxylase Length = 2036 Score = 165 bits (83), Expect = 2e-37 Identities = 150/171 (87%), Gaps = 6/171 (3%) Strand = Plus / Minus Query: 75 tatcaggatggcttcttcgcgcagtttgaatatgcagcagaa---aacttctttgcgcct 131 |||||||||||||||||||||||||| || || |||||||| |||||||| ||||| Sbjct: 362 tatcaggatggcttcttcgcgcagttggagtaagcagcagactggaacttcttcacgcct 303 Query: 132 ccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaacta 191 || || ||||||||||| |||||||||||||| ||||||||||| ||||||| ||||| | Sbjct: 302 ccggcaggtcgaacgtcctcaatgctgtagccaaggggagcttcatacatcaaggaacga 243 Query: 192 ctactgctaga---ctttttgccaccctttgactccattagaacattcact 239 ||||||||||| ||||||||||||||||||||||||||| |||| |||| Sbjct: 242 ctactgctagacttctttttgccaccctttgactccattagtacatccact 192
>dbj|AK100589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106D22, full insert sequence Length = 2063 Score = 165 bits (83), Expect = 2e-37 Identities = 150/171 (87%), Gaps = 6/171 (3%) Strand = Plus / Minus Query: 75 tatcaggatggcttcttcgcgcagtttgaatatgcagcagaa---aacttctttgcgcct 131 |||||||||||||||||||||||||| || || |||||||| |||||||| ||||| Sbjct: 406 tatcaggatggcttcttcgcgcagttggagtaagcagcagactggaacttcttcacgcct 347 Query: 132 ccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaacta 191 || || ||||||||||| |||||||||||||| ||||||||||| ||||||| ||||| | Sbjct: 346 ccggcaggtcgaacgtcctcaatgctgtagccaaggggagcttcatacatcaaggaacga 287 Query: 192 ctactgctaga---ctttttgccaccctttgactccattagaacattcact 239 ||||||||||| ||||||||||||||||||||||||||| |||| |||| Sbjct: 286 ctactgctagacttctttttgccaccctttgactccattagtacatccact 236
>dbj|AK098918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M21, full insert sequence Length = 2059 Score = 165 bits (83), Expect = 2e-37 Identities = 150/171 (87%), Gaps = 6/171 (3%) Strand = Plus / Minus Query: 75 tatcaggatggcttcttcgcgcagtttgaatatgcagcagaa---aacttctttgcgcct 131 |||||||||||||||||||||||||| || || |||||||| |||||||| ||||| Sbjct: 406 tatcaggatggcttcttcgcgcagttggagtaagcagcagactggaacttcttcacgcct 347 Query: 132 ccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaacta 191 || || ||||||||||| |||||||||||||| ||||||||||| ||||||| ||||| | Sbjct: 346 ccggcaggtcgaacgtcctcaatgctgtagccaaggggagcttcatacatcaaggaacga 287 Query: 192 ctactgctaga---ctttttgccaccctttgactccattagaacattcact 239 ||||||||||| ||||||||||||||||||||||||||| |||| |||| Sbjct: 286 ctactgctagacttctttttgccaccctttgactccattagtacatccact 236
>dbj|AK072162.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129L10, full insert sequence Length = 2711 Score = 165 bits (83), Expect = 2e-37 Identities = 150/171 (87%), Gaps = 6/171 (3%) Strand = Plus / Minus Query: 75 tatcaggatggcttcttcgcgcagtttgaatatgcagcagaa---aacttctttgcgcct 131 |||||||||||||||||||||||||| || || |||||||| |||||||| ||||| Sbjct: 406 tatcaggatggcttcttcgcgcagttggagtaagcagcagactggaacttcttcacgcct 347 Query: 132 ccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaacta 191 || || ||||||||||| |||||||||||||| ||||||||||| ||||||| ||||| | Sbjct: 346 ccggcaggtcgaacgtcctcaatgctgtagccaaggggagcttcatacatcaaggaacga 287 Query: 192 ctactgctaga---ctttttgccaccctttgactccattagaacattcact 239 ||||||||||| ||||||||||||||||||||||||||| |||| |||| Sbjct: 286 ctactgctagacttctttttgccaccctttgactccattagtacatccact 236
>dbj|AK067166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096P09, full insert sequence Length = 2063 Score = 165 bits (83), Expect = 2e-37 Identities = 150/171 (87%), Gaps = 6/171 (3%) Strand = Plus / Minus Query: 75 tatcaggatggcttcttcgcgcagtttgaatatgcagcagaa---aacttctttgcgcct 131 |||||||||||||||||||||||||| || || |||||||| |||||||| ||||| Sbjct: 406 tatcaggatggcttcttcgcgcagttggagtaagcagcagactggaacttcttcacgcct 347 Query: 132 ccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaacta 191 || || ||||||||||| |||||||||||||| ||||||||||| ||||||| ||||| | Sbjct: 346 ccggcaggtcgaacgtcctcaatgctgtagccaaggggagcttcatacatcaaggaacga 287 Query: 192 ctactgctaga---ctttttgccaccctttgactccattagaacattcact 239 ||||||||||| ||||||||||||||||||||||||||| |||| |||| Sbjct: 286 ctactgctagacttctttttgccaccctttgactccattagtacatccact 236
>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02, complete sequence Length = 173171 Score = 135 bits (68), Expect = 1e-28 Identities = 112/126 (88%), Gaps = 3/126 (2%) Strand = Plus / Minus Query: 117 aacttctttgcgcctccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcg 176 |||||||| ||||||| || ||||||||||| |||||||||||||| ||||||||||| Sbjct: 12175 aacttcttcacgcctccggcaggtcgaacgtcctcaatgctgtagccaaggggagcttca 12116 Query: 177 tacatcagggaactactactgctaga---ctttttgccaccctttgactccattagaaca 233 ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 12115 tacatcaaggaacgactactgctagacttctttttgccaccctttgactccattagtaca 12056 Query: 234 ttcact 239 | |||| Sbjct: 12055 tccact 12050 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 75 tatcaggatggcttcttcgcgca 97 ||||||||||||||||||||||| Sbjct: 12303 tatcaggatggcttcttcgcgca 12281
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 135 bits (68), Expect = 1e-28 Identities = 112/126 (88%), Gaps = 3/126 (2%) Strand = Plus / Minus Query: 117 aacttctttgcgcctccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcg 176 |||||||| ||||||| || ||||||||||| |||||||||||||| ||||||||||| Sbjct: 24891590 aacttcttcacgcctccggcaggtcgaacgtcctcaatgctgtagccaaggggagcttca 24891531 Query: 177 tacatcagggaactactactgctaga---ctttttgccaccctttgactccattagaaca 233 ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 24891530 tacatcaaggaacgactactgctagacttctttttgccaccctttgactccattagtaca 24891471 Query: 234 ttcact 239 | |||| Sbjct: 24891470 tccact 24891465 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 75 tatcaggatggcttcttcgcgca 97 ||||||||||||||||||||||| Sbjct: 24891718 tatcaggatggcttcttcgcgca 24891696
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 135 bits (68), Expect = 1e-28 Identities = 112/126 (88%), Gaps = 3/126 (2%) Strand = Plus / Minus Query: 117 aacttctttgcgcctccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcg 176 |||||||| ||||||| || ||||||||||| |||||||||||||| ||||||||||| Sbjct: 12204 aacttcttcacgcctccggcaggtcgaacgtcctcaatgctgtagccaaggggagcttca 12145 Query: 177 tacatcagggaactactactgctaga---ctttttgccaccctttgactccattagaaca 233 ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 12144 tacatcaaggaacgactactgctagacttctttttgccaccctttgactccattagtaca 12085 Query: 234 ttcact 239 | |||| Sbjct: 12084 tccact 12079 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 75 tatcaggatggcttcttcgcgca 97 ||||||||||||||||||||||| Sbjct: 12332 tatcaggatggcttcttcgcgca 12310
>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence Length = 170765 Score = 135 bits (68), Expect = 1e-28 Identities = 112/126 (88%), Gaps = 3/126 (2%) Strand = Plus / Minus Query: 117 aacttctttgcgcctccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcg 176 |||||||| ||||||| || ||||||||||| |||||||||||||| ||||||||||| Sbjct: 153306 aacttcttcacgcctccggcaggtcgaacgtcctcaatgctgtagccaaggggagcttca 153247 Query: 177 tacatcagggaactactactgctaga---ctttttgccaccctttgactccattagaaca 233 ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 153246 tacatcaaggaacgactactgctagacttctttttgccaccctttgactccattagtaca 153187 Query: 234 ttcact 239 | |||| Sbjct: 153186 tccact 153181 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 75 tatcaggatggcttcttcgcgca 97 ||||||||||||||||||||||| Sbjct: 153434 tatcaggatggcttcttcgcgca 153412
>emb|AJ252213.1|OSA252213 Oryza sativa partial adometDC1 gene for S-adenosylmethionine decarboxylase 1, exons 1-3 Length = 2036 Score = 127 bits (64), Expect = 3e-26 Identities = 111/126 (88%), Gaps = 3/126 (2%) Strand = Plus / Minus Query: 117 aacttctttgcgcctccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcg 176 |||||||| ||||||| || ||||||||||| |||||||||||||| ||||||||| | Sbjct: 1222 aacttcttcacgcctccggcaggtcgaacgtcctcaatgctgtagccaaggggagctaca 1163 Query: 177 tacatcagggaactactactgctaga---ctttttgccaccctttgactccattagaaca 233 ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 1162 tacatcaaggaacgactactgctagacttctttttgccaccctttgactccattagtaca 1103 Query: 234 ttcact 239 | |||| Sbjct: 1102 tccact 1097 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 75 tatcaggatggcttcttcgcgca 97 ||||||||||||||||||||||| Sbjct: 1350 tatcaggatggcttcttcgcgca 1328
>gb|BT013082.1| Lycopersicon esculentum clone 114340R, mRNA sequence Length = 380 Score = 117 bits (59), Expect = 3e-23 Identities = 94/105 (89%), Gaps = 3/105 (2%) Strand = Plus / Minus Query: 137 tggtcgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaactactact 196 |||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| Sbjct: 256 tggtcgaacgtcttcaatgctgtagccgaggggagcttcgtaaaataaggaactactact 197 Query: 197 gctaga---ctttttgccaccctttgactccattagaacattcac 238 ||||| |||||| ||||| ||||||||||||||| ||||||| Sbjct: 196 actagacttctttttaccaccttttgactccattagatcattcac 152
>gb|AY103940.1| Zea mays PCO064624 mRNA sequence Length = 2008 Score = 109 bits (55), Expect = 8e-21 Identities = 143/171 (83%), Gaps = 6/171 (3%) Strand = Plus / Minus Query: 73 gatatcaggatggcttcttcgcgcagtttgaatatgcagcagaaaacttctttgcgcctc 132 ||||||||||||||||| |||||||||| || || ||||| || |||||||| ||| | Sbjct: 378 gatatcaggatggcttcctcgcgcagttcgagtaagcagcggagaacttcttgatgccgc 319 Query: 133 cagctggtcgaacgtcttcaatgctgtagccgaggggagcttcgtacatcag---ggaac 189 | || || || | || || ||||||||||| |||||||||||||||||||| ||||| Sbjct: 318 ctgcagggcggatatcctcgatgctgtagccaaggggagcttcgtacatcagggaggaac 259 Query: 190 tactactgctaga---ctttttgccaccctttgactccattagaacattca 237 |||||||||||| ||| ||||||||||| ||||||||||||||||||| Sbjct: 258 gactactgctagacttcttcttgccacccttggactccattagaacattca 208
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 105 bits (53), Expect = 1e-19 Identities = 96/109 (88%), Gaps = 6/109 (5%) Strand = Plus / Plus Query: 129 cctccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaa 188 ||||| ||||| |||||||| ||||| ||||||| ||||||||||||||||| |||| Sbjct: 15332873 cctccggctgggcgaacgtcctcaatcttgtagcctaggggagcttcgtacat---ggaa 15332929 Query: 189 ctactactgctaga---ctttttgccaccctttgactccattagaacat 234 |||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct: 15332930 ctactactgctagacttctttttgccaccttttgactccattagaacat 15332978 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gcggtggcggcggcgaggcg 414 |||||||||||||||||||| Sbjct: 8613472 gcggtggcggcggcgaggcg 8613491 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 gcggtggcggcggcgaggcg 414 |||||||||||||||||||| Sbjct: 2539255 gcggtggcggcggcgaggcg 2539236
>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0418B08 Length = 165909 Score = 105 bits (53), Expect = 1e-19 Identities = 96/109 (88%), Gaps = 6/109 (5%) Strand = Plus / Plus Query: 129 cctccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaa 188 ||||| ||||| |||||||| ||||| ||||||| ||||||||||||||||| |||| Sbjct: 112062 cctccggctgggcgaacgtcctcaatcttgtagcctaggggagcttcgtacat---ggaa 112118 Query: 189 ctactactgctaga---ctttttgccaccctttgactccattagaacat 234 |||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct: 112119 ctactactgctagacttctttttgccaccttttgactccattagaacat 112167
>dbj|AB122089.1| Oryza sativa (japonica cultivar-group) SAMDC1 gene for S-adenosylmethionine decarboxylase, complete cds Length = 2952 Score = 105 bits (53), Expect = 1e-19 Identities = 96/109 (88%), Gaps = 6/109 (5%) Strand = Plus / Minus Query: 129 cctccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaa 188 ||||| ||||| |||||||| ||||| ||||||| ||||||||||||||||| |||| Sbjct: 1119 cctccggctgggcgaacgtcctcaatcttgtagcctaggggagcttcgtacat---ggaa 1063 Query: 189 ctactactgctaga---ctttttgccaccctttgactccattagaacat 234 |||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct: 1062 ctactactgctagacttctttttgccaccttttgactccattagaacat 1014
>dbj|AK102445.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093N21, full insert sequence Length = 2047 Score = 105 bits (53), Expect = 1e-19 Identities = 96/109 (88%), Gaps = 6/109 (5%) Strand = Plus / Minus Query: 129 cctccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaa 188 ||||| ||||| |||||||| ||||| ||||||| ||||||||||||||||| |||| Sbjct: 322 cctccggctgggcgaacgtcctcaatcttgtagcctaggggagcttcgtacat---ggaa 266 Query: 189 ctactactgctaga---ctttttgccaccctttgactccattagaacat 234 |||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct: 265 ctactactgctagacttctttttgccaccttttgactccattagaacat 217
>dbj|AK101535.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048C18, full insert sequence Length = 2002 Score = 105 bits (53), Expect = 1e-19 Identities = 96/109 (88%), Gaps = 6/109 (5%) Strand = Plus / Minus Query: 129 cctccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaa 188 ||||| ||||| |||||||| ||||| ||||||| ||||||||||||||||| |||| Sbjct: 323 cctccggctgggcgaacgtcctcaatcttgtagcctaggggagcttcgtacat---ggaa 267 Query: 189 ctactactgctaga---ctttttgccaccctttgactccattagaacat 234 |||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct: 266 ctactactgctagacttctttttgccaccttttgactccattagaacat 218
>dbj|AK100397.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M03, full insert sequence Length = 2546 Score = 105 bits (53), Expect = 1e-19 Identities = 96/109 (88%), Gaps = 6/109 (5%) Strand = Plus / Minus Query: 129 cctccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaa 188 ||||| ||||| |||||||| ||||| ||||||| ||||||||||||||||| |||| Sbjct: 848 cctccggctgggcgaacgtcctcaatcttgtagcctaggggagcttcgtacat---ggaa 792 Query: 189 ctactactgctaga---ctttttgccaccctttgactccattagaacat 234 |||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct: 791 ctactactgctagacttctttttgccaccttttgactccattagaacat 743
>dbj|AK067682.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116D10, full insert sequence Length = 2034 Score = 105 bits (53), Expect = 1e-19 Identities = 96/109 (88%), Gaps = 6/109 (5%) Strand = Plus / Minus Query: 129 cctccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaa 188 ||||| ||||| |||||||| ||||| ||||||| ||||||||||||||||| |||| Sbjct: 322 cctccggctgggcgaacgtcctcaatcttgtagcctaggggagcttcgtacat---ggaa 266 Query: 189 ctactactgctaga---ctttttgccaccctttgactccattagaacat 234 |||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct: 265 ctactactgctagacttctttttgccaccttttgactccattagaacat 217
>ref|XM_506863.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1476_F05.33 mRNA Length = 1982 Score = 99.6 bits (50), Expect = 8e-18 Identities = 78/86 (90%), Gaps = 6/86 (6%) Strand = Plus / Minus Query: 150 tcaatgctgtagccgaggggagcttcgtacatcag---ggaactactactgctaga---c 203 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 316 tcaatgctgtagccgaggggagcttcgtacatcagggaggaacgactactgctagacttc 257 Query: 204 tttttgccaccctttgactccattag 229 |||||||||||||| ||||||||||| Sbjct: 256 tttttgccacccttggactccattag 231
>emb|Y07768.1|DSSADMEDC D.stramonium mRNA for S-adenosylmethionine decarboxylase Length = 1839 Score = 99.6 bits (50), Expect = 8e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 137 tggtcgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaactactact 196 |||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| Sbjct: 234 tggtcgaacgtcttcaatgctgtagccgaggggagcttcgtaaaataaggaactactact 175 Query: 197 gctagactttttgccaccctttgactccattagaacattcac 238 |||||| ||||| ||||||||||||||| ||||||| Sbjct: 174 agacttctttttcccaccttttgactccattagatcattcac 133
>emb|AJ251899.1|OSA251899 Oryza sativa mRNA for S-adenosylmethionine decarboxylase 2 (adometDC2 gene) Length = 1971 Score = 99.6 bits (50), Expect = 8e-18 Identities = 78/86 (90%), Gaps = 6/86 (6%) Strand = Plus / Minus Query: 150 tcaatgctgtagccgaggggagcttcgtacatcag---ggaactactactgctaga---c 203 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 302 tcaatgctgtagccgaggggagcttcgtacatcagggaggaacgactactgctagacttc 243 Query: 204 tttttgccaccctttgactccattag 229 |||||||||||||| ||||||||||| Sbjct: 242 tttttgccacccttggactccattag 217
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 99.6 bits (50), Expect = 8e-18 Identities = 78/86 (90%), Gaps = 6/86 (6%) Strand = Plus / Minus Query: 150 tcaatgctgtagccgaggggagcttcgtacatcag---ggaactactactgctaga---c 203 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 24065912 tcaatgctgtagccgaggggagcttcgtacatcagggaggaacgactactgctagacttc 24065853 Query: 204 tttttgccaccctttgactccattag 229 |||||||||||||| ||||||||||| Sbjct: 24065852 tttttgccacccttggactccattag 24065827
>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A05 Length = 174290 Score = 99.6 bits (50), Expect = 8e-18 Identities = 78/86 (90%), Gaps = 6/86 (6%) Strand = Plus / Minus Query: 150 tcaatgctgtagccgaggggagcttcgtacatcag---ggaactactactgctaga---c 203 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 24653 tcaatgctgtagccgaggggagcttcgtacatcagggaggaacgactactgctagacttc 24594 Query: 204 tttttgccaccctttgactccattag 229 |||||||||||||| ||||||||||| Sbjct: 24593 tttttgccacccttggactccattag 24568
>dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1476_F05 Length = 125426 Score = 99.6 bits (50), Expect = 8e-18 Identities = 78/86 (90%), Gaps = 6/86 (6%) Strand = Plus / Minus Query: 150 tcaatgctgtagccgaggggagcttcgtacatcag---ggaactactactgctaga---c 203 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 100950 tcaatgctgtagccgaggggagcttcgtacatcagggaggaacgactactgctagacttc 100891 Query: 204 tttttgccaccctttgactccattag 229 |||||||||||||| ||||||||||| Sbjct: 100890 tttttgccacccttggactccattag 100865
>emb|AJ252214.1|OSA252214 Oryza sativa partial adometDC2 gene for S-adenosylmethionine decarboxylase 2, exons 1-3 Length = 1721 Score = 99.6 bits (50), Expect = 8e-18 Identities = 78/86 (90%), Gaps = 6/86 (6%) Strand = Plus / Minus Query: 150 tcaatgctgtagccgaggggagcttcgtacatcag---ggaactactactgctaga---c 203 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 1214 tcaatgctgtagccgaggggagcttcgtacatcagggaggaacgactactgctagacttc 1155 Query: 204 tttttgccaccctttgactccattag 229 |||||||||||||| ||||||||||| Sbjct: 1154 tttttgccacccttggactccattag 1129
>dbj|AK070269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047N04, full insert sequence Length = 1182 Score = 99.6 bits (50), Expect = 8e-18 Identities = 78/86 (90%), Gaps = 6/86 (6%) Strand = Plus / Minus Query: 150 tcaatgctgtagccgaggggagcttcgtacatcag---ggaactactactgctaga---c 203 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 313 tcaatgctgtagccgaggggagcttcgtacatcagggaggaacgactactgctagacttc 254 Query: 204 tttttgccaccctttgactccattag 229 |||||||||||||| ||||||||||| Sbjct: 253 tttttgccacccttggactccattag 228
>dbj|AK070259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041P13, full insert sequence Length = 1982 Score = 99.6 bits (50), Expect = 8e-18 Identities = 78/86 (90%), Gaps = 6/86 (6%) Strand = Plus / Minus Query: 150 tcaatgctgtagccgaggggagcttcgtacatcag---ggaactactactgctaga---c 203 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 316 tcaatgctgtagccgaggggagcttcgtacatcagggaggaacgactactgctagacttc 257 Query: 204 tttttgccaccctttgactccattag 229 |||||||||||||| ||||||||||| Sbjct: 256 tttttgccacccttggactccattag 231
>ref|XM_466676.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1750 Score = 95.6 bits (48), Expect = 1e-16 Identities = 76/84 (90%), Gaps = 6/84 (7%) Strand = Plus / Minus Query: 150 tcaatgctgtagccgaggggagcttcgtacatcag---ggaactactactgctaga---c 203 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 84 tcaatgctgtagccgaggggagcttcgtacatcagggaggaacgactactgctagacttc 25 Query: 204 tttttgccaccctttgactccatt 227 |||||||||||||| ||||||||| Sbjct: 24 tttttgccacccttggactccatt 1
>dbj|AK062133.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-E08, full insert sequence Length = 1750 Score = 95.6 bits (48), Expect = 1e-16 Identities = 76/84 (90%), Gaps = 6/84 (7%) Strand = Plus / Minus Query: 150 tcaatgctgtagccgaggggagcttcgtacatcag---ggaactactactgctaga---c 203 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 84 tcaatgctgtagccgaggggagcttcgtacatcagggaggaacgactactgctagacttc 25 Query: 204 tttttgccaccctttgactccatt 227 |||||||||||||| ||||||||| Sbjct: 24 tttttgccacccttggactccatt 1
>gb|AY536644.1| Brassica juncea S-adenosylmethionine decarboxylase (SAMDC4) mRNA, complete cds Length = 1705 Score = 93.7 bits (47), Expect = 5e-16 Identities = 79/89 (88%), Gaps = 3/89 (3%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaactactactgcta 200 |||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||| Sbjct: 227 cgaacgtcttcaatgctgtaaccgaggggagcttcgtaaaataaggaactactactgcta 168 Query: 201 ga---ctttttgccaccctttgactccat 226 || |||||| ||||| ||||||||||| Sbjct: 167 gacttctttttaccaccttttgactccat 139
>gb|AF321141.1|AF321141S1 Nicotiana tabacum S-adenosylmethionine decarboxylase mRNA, partial cds Length = 639 Score = 89.7 bits (45), Expect = 7e-15 Identities = 57/61 (93%) Strand = Plus / Minus Query: 137 tggtcgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaactactact 196 |||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| Sbjct: 82 tggtcgaacgtcttcaatgctgtagccgaggggagcttcgtaaaataaggaactactact 23 Query: 197 g 197 | Sbjct: 22 g 22
>gb|AY232672.1| Narcissus pseudonarcissus S-adenosylmethionine decarboxylase (SAMdc) mRNA, complete cds Length = 1812 Score = 89.7 bits (45), Expect = 7e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaactactactgcta 200 |||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| Sbjct: 246 cgaacgtcttcaatgctgtagccgaggggagcttcgtattgcatggaattactactgcta 187 Query: 201 gactt 205 ||||| Sbjct: 186 gactt 182
>ref|NM_001035545.1| Arabidopsis thaliana SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase AT3G02470 (SAMDC) transcript variant AT3G02470.2 mRNA, complete cds Length = 2061 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaactactactgcta 200 |||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||| Sbjct: 486 cgaacgtcttcaatgctgtaaccgaggggagcttcgtaaaataaggaactactactgctg 427 Query: 201 gactt 205 ||||| Sbjct: 426 gactt 422
>ref|NM_111114.2| Arabidopsis thaliana SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase AT3G02470 (SAMDC) transcript variant AT3G02470.1 mRNA, complete cds Length = 1953 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaactactactgcta 200 |||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||| Sbjct: 393 cgaacgtcttcaatgctgtaaccgaggggagcttcgtaaaataaggaactactactgctg 334 Query: 201 gactt 205 ||||| Sbjct: 333 gactt 329
>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence Length = 141360 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaactactactgcta 200 |||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||| Sbjct: 107150 cgaacgtcttcaatgctgtagccgaggggagcttcgtagaataaggatttactactgcta 107091 Query: 201 gactt 205 ||||| Sbjct: 107090 gactt 107086
>gb|AC021640.7|ATAC021640 Arabidopsis thaliana chromosome III BAC F16B3 genomic sequence, complete sequence Length = 103904 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaactactactgcta 200 |||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||| Sbjct: 25547 cgaacgtcttcaatgctgtaaccgaggggagcttcgtaaaataaggaactactactgctg 25488 Query: 201 gactt 205 ||||| Sbjct: 25487 gactt 25483
>emb|Y07765.1|ATSADMEDC A.thaliana gene encoding S-adenosylmethionine decarboxylase Length = 2369 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaactactactgcta 200 |||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||| Sbjct: 784 cgaacgtcttcaatgctgtaaccgaggggagcttcgtaaaataaggaactactactgctg 725 Query: 201 gactt 205 ||||| Sbjct: 724 gactt 720
>gb|AF428468.1|AF428468 Arabidopsis thaliana AT3g02470/F16B3_10 mRNA, complete cds Length = 1807 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaactactactgcta 200 |||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||| Sbjct: 320 cgaacgtcttcaatgctgtaaccgaggggagcttcgtaaaataaggaactactactgctg 261 Query: 201 gactt 205 ||||| Sbjct: 260 gactt 256
>gb|AY054185.1| Arabidopsis thaliana AT3g02470/F16B3_10 mRNA, complete cds Length = 1781 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaactactactgcta 200 |||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||| Sbjct: 320 cgaacgtcttcaatgctgtaaccgaggggagcttcgtaaaataaggaactactactgctg 261 Query: 201 gactt 205 ||||| Sbjct: 260 gactt 256
>gb|AY042824.1| Arabidopsis thaliana S-adenosylmethionine decarboxylase (F16B3.10) mRNA, complete cds Length = 1876 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaactactactgcta 200 |||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||| Sbjct: 320 cgaacgtcttcaatgctgtaaccgaggggagcttcgtaaaataaggaactactactgctg 261 Query: 201 gactt 205 ||||| Sbjct: 260 gactt 256
>gb|U63633.1|ATU63633 Arabidopsis thaliana S-adenosylmethionine decarboxylase (SAMdc) mRNA, complete cds Length = 1823 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaactactactgcta 200 |||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||| Sbjct: 311 cgaacgtcttcaatgctgtaaccgaggggagcttcgtaaaataaggaactactactgctg 252 Query: 201 gactt 205 ||||| Sbjct: 251 gactt 247
>gb|AY730047.1| Phaseolus vulgaris putative SAMDC uORF mRNA, complete cds Length = 162 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Minus Query: 137 tggtcgaacgtcttcaatgctgtagccgaggggagcttcgta 178 |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 99 tggtcgaatgtcttcaatgctgtagccgaggggagcttcgta 58
>gb|S74514.1| S-adenosylmethionine decarboxylase [Solanum tuberosum=potatoes, cv. Desiree, Genomic, 2904 nt] Length = 2904 Score = 71.9 bits (36), Expect = 2e-09 Identities = 90/106 (84%), Gaps = 4/106 (3%) Strand = Plus / Minus Query: 137 tggtcgaacgtcttcaatgctgtagccgaggggagctt-cgtacatcagggaactactac 195 ||||||||||||| ||||||| |||||||||||||| |||| | | ||||||||||| Sbjct: 1206 tggtcgaacgtctctaatgctgatgccgaggggagcttacgtaaaataaggaactactac 1147 Query: 196 tgctagactt---tttgccaccctttgactccattagaacattcac 238 | |||||||| ||| ||||| ||||||||||||||| ||||||| Sbjct: 1146 tactagacttctttttaccaccttttgactccattagatcattcac 1101
>dbj|AB077442.2| Malus x domestica SAMDC mRNA for S-adenosylmethionine decarboxylase, complete cds, clone:MdSAMDC2 Length = 1938 Score = 69.9 bits (35), Expect = 7e-09 Identities = 76/89 (85%), Gaps = 3/89 (3%) Strand = Plus / Minus Query: 144 acgtcttcaatgctgtagccgaggggagcttcgtacatcagggaactactactgctaga- 202 ||||||||||||||||| ||||||||||||||||| | || || ||||||| ||||| Sbjct: 339 acgtcttcaatgctgtaaccgaggggagcttcgtagaacaatgatttactactactagaa 280 Query: 203 --ctttttgccaccctttgactccattag 229 |||||||||||| || ||||||||||| Sbjct: 279 tcctttttgccacctttggactccattag 251
>gb|AY491510.2| Daucus carota S-adenosylmethionine decarboxylase (samdc1) gene, complete cds Length = 2849 Score = 67.9 bits (34), Expect = 3e-08 Identities = 86/103 (83%), Gaps = 9/103 (8%) Strand = Plus / Minus Query: 144 acgtcttcaatgctgtagccgaggggagcttcgtacatcaggga---actact------a 194 ||||||||||||||||| ||||||||||||||||| | || ||| |||||| | Sbjct: 1228 acgtcttcaatgctgtatccgaggggagcttcgtagaacaaggatttactactactacta 1169 Query: 195 ctgctagactttttgccaccctttgactccattagaacattca 237 || ||||||||||| ||||| |||| ||||||||||||||||| Sbjct: 1168 ctactagactttttcccaccttttgtctccattagaacattca 1126
>gb|DQ415922.1| Cleome spinosa clone BAC Cs1, complete sequence Length = 146078 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgta 178 |||||||||||||||||||| ||||||||||||||||| Sbjct: 111951 cgaacgtcttcaatgctgtaaccgaggggagcttcgta 111914
>gb|AY491511.1| Daucus carota S-adenosylmethionine decarboxylase (samdc2) gene, complete cds Length = 2843 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 188 actactactgctagactttttgccaccctttgactccattagaacattca 237 ||||||||| ||||||||||| ||||| |||| ||||||||||||||||| Sbjct: 1173 actactactactagactttttcccaccttttgtctccattagaacattca 1124 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 144 acgtcttcaatgctgtagccgaggggagcttcgta 178 ||||||||||||||||| ||||||||||||||||| Sbjct: 1226 acgtcttcaatgctgtatccgaggggagcttcgta 1192
>emb|X95729.1|BJSAMDC1G B.juncea mRNA for S-adenosylmethionine decarboxylase Length = 1653 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgta 178 |||||||||||||||||||| ||||||||||||||||| Sbjct: 238 cgaacgtcttcaatgctgtaaccgaggggagcttcgta 201
>gb|AF488307.1| Glycine max S-adenosylmethionine decarboxylase (SAMDC) mRNA, complete cds Length = 1824 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 137 tggtcgaacgtcttcaatgctgtagccgaggggagcttcgta 178 ||||| |||||||||||||||||| ||||||||||||||||| Sbjct: 319 tggtctaacgtcttcaatgctgtatccgaggggagcttcgta 278
>gb|AF420239.1|AF420239 Dendrobium crumenatum S-adenosyl-L-methionine decarboxylase (Samdc) mRNA, complete cds Length = 1894 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgta 178 |||||||||||||||||||||||||||||| ||||||| Sbjct: 309 cgaacgtcttcaatgctgtagccgaggggaacttcgta 272
>gb|AY444341.1| Brassica juncea S-adenosyl-L-methionine decarboxylase (SAMDC2) gene, complete cds Length = 4456 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgta 178 |||||||||||||||||||| ||||||||||||||||| Sbjct: 2928 cgaacgtcttcaatgctgtaaccgaggggagcttcgta 2891
>gb|AF334029.1|AF334029 Daucus carota S-adenosyl-methionine decarboxylase (SAMDC) mRNA, complete cds Length = 1761 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 188 actactactgctagactttttgccaccctttgactccattagaacattca 237 ||||||||| ||||||||||| ||||| |||| ||||||||||||||||| Sbjct: 188 actactactactagactttttcccaccttttgtctccattagaacattca 139 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 144 acgtcttcaatgctgtagccgaggggagcttcgta 178 ||||||||||||||||| ||||||||||||||||| Sbjct: 241 acgtcttcaatgctgtatccgaggggagcttcgta 207
>gb|AF215665.1|AF215665 Brassica juncea S-adenosyl-L-methionine decarboxylase (SAMDC3) mRNA, complete cds Length = 1743 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgta 178 |||||||||||||||||||| ||||||||||||||||| Sbjct: 270 cgaacgtcttcaatgctgtaaccgaggggagcttcgta 233
>gb|U80916.1|BJU80916 Brassica juncea S-adenosyl-L-methionine decarboxylase mRNA, complete cds Length = 1676 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgta 178 |||||||||||||||||||| ||||||||||||||||| Sbjct: 231 cgaacgtcttcaatgctgtaaccgaggggagcttcgta 194
>dbj|AB062360.1| Phaseolus lunatus SAMDC mRNA for S-adenosylmethionine decarboxylase, complete cds Length = 1518 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 137 tggtcgaacgtcttcaatgctgtagccgaggggagcttcgta 178 |||||||| |||||||||||| |||||||||||||||||||| Sbjct: 43 tggtcgaatgtcttcaatgctatagccgaggggagcttcgta 2
>gb|U12573.1|CRU12573 Catharanthus roseus S-adenosyl-L-methionine decarboxylase proenzyme mRNA, complete cds Length = 1864 Score = 65.9 bits (33), Expect = 1e-07 Identities = 83/99 (83%), Gaps = 3/99 (3%) Strand = Plus / Minus Query: 144 acgtcttcaatgctgtagccgaggggagcttcgtacatcagggaactactactgctaga- 202 ||||||||||||||||| ||||||||||||||||| | | ||| ||||||| ||||| Sbjct: 245 acgtcttcaatgctgtatccgaggggagcttcgtagaataaggatttactactactagac 186 Query: 203 --ctttttgccaccctttgactccattagaacattcact 239 ||| || ||||| || |||||||||||| |||||||| Sbjct: 185 ttcttcttcccacctttagactccattagatcattcact 147
>emb|AJ704800.1| Prunus persica partial samdc gene for S-adenosylmethionine decarboxylase, exons 1-3 Length = 1189 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 144 acgtcttcaatgctgtagccgaggggagcttcgta 178 ||||||||||||||||| ||||||||||||||||| Sbjct: 86 acgtcttcaatgctgtaaccgaggggagcttcgta 52
>gb|AF033100.1|AF033100 Nicotiana tabacum S-adenosylmethionine decarboxylase gene, complete cds Length = 2325 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgta 178 |||||||||||||| |||||||||||||| |||||||| Sbjct: 374 cgaacgtcttcaatactgtagccgaggggtgcttcgta 337
>gb|AY104070.1| Zea mays PCO115703 mRNA sequence Length = 2000 Score = 54.0 bits (27), Expect = 4e-04 Identities = 86/105 (81%), Gaps = 3/105 (2%) Strand = Plus / Minus Query: 129 cctccagctggtcgaacgtcttcaatgctgtagccgaggggagcttcgtacatcagggaa 188 ||||| ||||| |||||||| || || ||||||| ||||||||||||||||| | | Sbjct: 282 cctccggctgggcgaacgtcctcgatcttgtagccaaggggagcttcgtacatgaaatta 223 Query: 189 c---tactactgctagactttttgccaccctttgactccattaga 230 | ||||||| |||||||| |||||||| || |||||||||||| Sbjct: 222 ctattactactactagacttcttgccacctttcgactccattaga 178
>ref|NM_001036811.1| Arabidopsis thaliana adenosylmethionine decarboxylase AT5G15950 transcript variant AT5G15950.2 mRNA, complete cds Length = 1881 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgta 178 |||||||||||||||||||| || ||||| |||||||| Sbjct: 365 cgaacgtcttcaatgctgtaaccaaggggtgcttcgta 328
>ref|NM_121600.2| Arabidopsis thaliana adenosylmethionine decarboxylase AT5G15950 transcript variant AT5G15950.1 mRNA, complete cds Length = 1748 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgta 178 |||||||||||||||||||| || ||||| |||||||| Sbjct: 281 cgaacgtcttcaatgctgtaaccaaggggtgcttcgta 244
>gb|BT013281.1| Lycopersicon esculentum clone 134862F, mRNA sequence Length = 1812 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 137 tggtcgaacgtcttcaatgctgtagccgaggggagcttcgta 178 |||||||||||||||||| |||| || |||||||||||||| Sbjct: 299 tggtcgaacgtcttcaatagtgtaacctaggggagcttcgta 258
>emb|AL391145.1|ATF1N13 Arabidopsis thaliana DNA chromosome 5, BAC clone F1N13 (ESSA project) Length = 74687 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgta 178 |||||||||||||||||||| || ||||| |||||||| Sbjct: 25230 cgaacgtcttcaatgctgtaaccaaggggtgcttcgta 25193
>emb|AJ252212.1|ATH252212 Arabidopsis thaliana adometDC2 gene for S-adenosylmethionine decarboxylase, exons 1-3 Length = 2072 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgta 178 |||||||||||||||||||| || ||||| |||||||| Sbjct: 688 cgaacgtcttcaatgctgtaaccaaggggtgcttcgta 651
>emb|AJ251915.1|ATH251915 Arabidopsis thaliana mRNA for S-adenosylmethionine decarboxylase (adoMetDC2 gene)and ORF Length = 1723 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgta 178 |||||||||||||||||||| || ||||| |||||||| Sbjct: 271 cgaacgtcttcaatgctgtaaccaaggggtgcttcgta 234
>gb|U60592.1|PSU60592 Pisum sativum putative ORF; conserved in 5' leaders of plant SAMdC and S-adenosylmethionine decarboxylase mRNAs, complete cds Length = 1829 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgta 178 |||| ||||||||||||||| |||||||| |||||||| Sbjct: 299 cgaatgtcttcaatgctgtatccgaggggggcttcgta 262
>gb|AF436825.1|AF436825 Arabidopsis thaliana AT5g15950/F1N13_90 mRNA, complete cds Length = 1728 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 141 cgaacgtcttcaatgctgtagccgaggggagcttcgta 178 |||||||||||||||||||| || ||||| |||||||| Sbjct: 282 cgaacgtcttcaatgctgtaaccaaggggtgcttcgta 245
>gb|U38527.1|DCU38527 Dianthus caryophyllus S-adenosylmethionine 2 decarboxylase mRNA, complete cds Length = 1829 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 137 tggtcgaacgtcttcaatgctgtagccgag 166 |||||||| ||||||||||||||||||||| Sbjct: 251 tggtcgaaggtcttcaatgctgtagccgag 222
>emb|AJ567368.2|VVI567368 Vitis vinifera samdc gene for S-adenosylmethionine decarboxylase proenzyme, mRNA Length = 1709 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 138 ggtcgaacgtcttcaatgctgtagccgaggggagcttc 175 ||||||| |||||||||||||||||| || |||||||| Sbjct: 181 ggtcgaatgtcttcaatgctgtagccaagaggagcttc 144
>gb|BT013882.1| Lycopersicon esculentum clone 132862F, mRNA sequence Length = 1849 Score = 46.1 bits (23), Expect = 0.097 Identities = 35/39 (89%) Strand = Plus / Minus Query: 137 tggtcgaacgtcttcaatgctgtagccgaggggagcttc 175 ||||| |||||||||||| |||||||| ||||| ||||| Sbjct: 251 tggtctaacgtcttcaatactgtagccaaggggtgcttc 213 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Minus Query: 193 tactgctagactttttgccaccctttgactccattagaacattcac 238 |||| |||||||| || ||||| || |||||||||||| ||||||| Sbjct: 198 tactactagacttcttcccacctttagactccattagatcattcac 153
>dbj|AB077441.2| Malus x domestica SAMDC mRNA for S-adenosylmethionine decarboxylase, complete cds, clone:MdSAMDC1 Length = 1875 Score = 46.1 bits (23), Expect = 0.097 Identities = 35/39 (89%) Strand = Plus / Minus Query: 188 actactactgctagactttttgccaccctttgactccat 226 ||||||||| ||||||||||| ||||| || |||||||| Sbjct: 197 actactactactagactttttaccacctttggactccat 159
>gb|U94786.1|DCU94786 Dianthus caryophyllus S-adenosylmethionine decarboxylase (gcsdc9) gene, complete cds Length = 4311 Score = 46.1 bits (23), Expect = 0.097 Identities = 32/35 (91%) Strand = Plus / Minus Query: 138 ggtcgaacgtcttcaatgctgtagccgaggggagc 172 ||||||||||| ||||||||||| ||||| ||||| Sbjct: 2726 ggtcgaacgtcctcaatgctgtaaccgagtggagc 2692
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 395 gcggtggcggcggcgaggcggt 416 |||||||||||||||||||||| Sbjct: 68007 gcggtggcggcggcgaggcggt 67986
>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome condensation factor (CCF), putative resistance protein (RGA-2), putative resistance protein (RGA2) and putative nodulin-like-like protein (NLL) gene, complete cds; and retrotransposons Josephine, Angela-2, Angela-4, Heidi, Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5, Barbara, Isabelle, Erika-2, and Claudia Length = 211009 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 395 gcggtggcggcggcgaggcggt 416 |||||||||||||||||||||| Sbjct: 201722 gcggtggcggcggcgaggcggt 201743
>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07, complete sequence Length = 151399 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 395 gcggtggcggcggcgaggcggt 416 |||||||||||||||||||||| Sbjct: 61863 gcggtggcggcggcgaggcggt 61842
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 395 gcggtggcggcggcgaggcggt 416 |||||||||||||||||||||| Sbjct: 1968986 gcggtggcggcggcgaggcggt 1968965 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 ctggctgcggtggcggcggcgagg 412 |||||||||| ||||||||||||| Sbjct: 14913410 ctggctgcggcggcggcggcgagg 14913433 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 ggctgcggtggcggcggcga 410 |||||||||||||||||||| Sbjct: 5915487 ggctgcggtggcggcggcga 5915506 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gcggtggcggcggcgaggcg 414 |||||||||||||||||||| Sbjct: 4756280 gcggtggcggcggcgaggcg 4756299 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 gcggtggcggcggcgaggcg 414 |||||||||||||||||||| Sbjct: 4645685 gcggtggcggcggcgaggcg 4645666
>dbj|AK102034.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081B21, full insert sequence Length = 1312 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 395 gcggtggcggcggcgaggcggt 416 |||||||||||||||||||||| Sbjct: 699 gcggtggcggcggcgaggcggt 678
>dbj|AK099362.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048I06, full insert sequence Length = 1345 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 395 gcggtggcggcggcgaggcggt 416 |||||||||||||||||||||| Sbjct: 730 gcggtggcggcggcgaggcggt 709
>emb|CT573229.8| Zebrafish DNA sequence from clone DKEY-11D7 in linkage group 1, complete sequence Length = 146843 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 97 agtttgaatatgcagcagaaaa 118 |||||||||||||||||||||| Sbjct: 46907 agtttgaatatgcagcagaaaa 46886
>dbj|AK064360.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B09, full insert sequence Length = 1365 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 395 gcggtggcggcggcgaggcggt 416 |||||||||||||||||||||| Sbjct: 729 gcggtggcggcggcgaggcggt 708
>tpe|BN000595.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx66 gene for class III peroxidase 66, exons 1-2 Length = 1925 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 395 gcggtggcggcggcgaggcggt 416 |||||||||||||||||||||| Sbjct: 1516 gcggtggcggcggcgaggcggt 1495
>emb|AL137800.12| Human DNA sequence from clone RP1-127C7 on chromosome 1q25.1-31.1 Contains the 3' end of the C1orf16 gene for chromosome 1 open reading frame 16, the NCF2 gene for neutrophil cytosolic factor 2 (65kDa, chronic granulomatous disease, autosomal 2), a novel gene, the ARPC5 gene for actin related protein 2/3 complex subunit 5 (16kDa), the 5' end of the RGL1 gene for ral guanine nucleotide dissociation stimulator-like 1, a novel gene (MGC26594) and a CpG island, complete sequence Length = 185832 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 aaaagagtcagaataaaattg 32 ||||||||||||||||||||| Sbjct: 5463 aaaagagtcagaataaaattg 5443
>dbj|AK016582.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932703K07 product:unclassifiable, full insert sequence Length = 1166 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 395 gcggtggcggcggcgaggcgg 415 ||||||||||||||||||||| Sbjct: 104 gcggtggcggcggcgaggcgg 84
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 391 ggctgcggtggcggcggcgaggcgg 415 |||||||| |||||||||||||||| Sbjct: 17555819 ggctgcggcggcggcggcgaggcgg 17555795
>emb|AL596265.12| Mouse DNA sequence from clone RP23-134O19 on chromosome 12, complete sequence Length = 205332 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 gcggtggcggcggcgaggcgg 415 ||||||||||||||||||||| Sbjct: 108580 gcggtggcggcggcgaggcgg 108600
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 ctggctgcggtggcggcggcg 409 ||||||||||||||||||||| Sbjct: 2560711 ctggctgcggtggcggcggcg 2560731
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 391 ggctgcggtggcggcggcgaggcgg 415 |||||||| |||||||||||||||| Sbjct: 17510190 ggctgcggcggcggcggcgaggcgg 17510166
>emb|AL935066.2|CNS08CCI Oryza sativa chromosome 12, . BAC OSJNBa0005P03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 162200 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 391 ggctgcggtggcggcggcgaggcgg 415 |||||||| |||||||||||||||| Sbjct: 48155 ggctgcggcggcggcggcgaggcgg 48131
>dbj|AB029935.1| Triticum aestivum mRNA for chitinase 2, complete cds Length = 1163 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 ctggctgcggtggcggcggcg 409 ||||||||||||||||||||| Sbjct: 208 ctggctgcggtggcggcggcg 228
>ref|XM_476068.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1245 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 gcggtggcggcggcgaggcg 414 |||||||||||||||||||| Sbjct: 1231 gcggtggcggcggcgaggcg 1212
>ref|NM_113454.2| Arabidopsis thaliana adenosylmethionine decarboxylase AT3G25570 mRNA, complete cds Length = 1527 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 tggtcgaacgtcttcaatgctgta 160 ||||| |||||||||||||||||| Sbjct: 102 tggtctaacgtcttcaatgctgta 79
>gb|AY421966.1| Cryptococcus gattii strain ATCC 32609 MAT-alpha mating locus, fragment III Length = 17317 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 agaataaaattgcataaaaa 40 |||||||||||||||||||| Sbjct: 16863 agaataaaattgcataaaaa 16882
>gb|AC134346.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0018A03, complete sequence Length = 146278 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 ctggctgcggtggcggcggcgagg 412 |||||||||| ||||||||||||| Sbjct: 64326 ctggctgcggcggcggcggcgagg 64349
>gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16, complete sequence Length = 164501 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 tctcgagccctcccgacgag 356 |||||||||||||||||||| Sbjct: 42857 tctcgagccctcccgacgag 42838
>gb|AY360394.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19, complete sequence Length = 158749 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 tctcgagccctcccgacgag 356 |||||||||||||||||||| Sbjct: 20390 tctcgagccctcccgacgag 20409
>gb|AY022835.1| Oryza sativa microsatellite MRG5160 containing (CGC)X10, genomic sequence Length = 230 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 ctgcggtggcggcggcgagg 412 |||||||||||||||||||| Sbjct: 167 ctgcggtggcggcggcgagg 148
>gb|AC027660.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone BAC nbxb0045B21, complete sequence Length = 152397 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 tggctgcggtggcggcggcg 409 |||||||||||||||||||| Sbjct: 62707 tggctgcggtggcggcggcg 62688
>gb|AC132493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636E04, complete sequence Length = 141171 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 ggctgcggtggcggcggcga 410 |||||||||||||||||||| Sbjct: 53061 ggctgcggtggcggcggcga 53080
>gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence Length = 130161 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 ggctgcggtggcggcggcgaggcg 414 |||||||| ||||||||||||||| Sbjct: 117133 ggctgcggcggcggcggcgaggcg 117156
>gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0029B02, complete sequence Length = 156649 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 gcggtggcggcggcgaggcg 414 |||||||||||||||||||| Sbjct: 156152 gcggtggcggcggcgaggcg 156133
>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence Length = 190055 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gcggtggcggcggcgaggcg 414 |||||||||||||||||||| Sbjct: 22650 gcggtggcggcggcgaggcg 22669
>ref|XM_603860.2| PREDICTED: Bos taurus similar to Potassium voltage-gated channel subfamily A member 3 (Voltage-gated potassium channel subunit Kv1.3) (RGK5) (RCK3) (KV3) (LOC525507), mRNA Length = 2042 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 tggctgcggtggcggcggcg 409 |||||||||||||||||||| Sbjct: 228 tggctgcggtggcggcggcg 247
>gb|AC123526.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06, complete sequence Length = 185449 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 ggctgcggtggcggcggcgaggcg 414 |||||||| ||||||||||||||| Sbjct: 50114 ggctgcggcggcggcggcgaggcg 50137
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gcggtggcggcggcgaggcg 414 |||||||||||||||||||| Sbjct: 21329739 gcggtggcggcggcgaggcg 21329758
>gb|AY339884.1| Zea mays WD40 repeat protein (mp1) gene, complete cds Length = 2965 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gcggtggcggcggcgaggcg 414 |||||||||||||||||||| Sbjct: 1518 gcggtggcggcggcgaggcg 1537
>emb|CT025565.5| Mouse DNA sequence from clone RP24-126K5 on chromosome 17, complete sequence Length = 175523 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 23 aataaaattgcataaaaatcctaaacta 50 |||| |||| |||||||||||||||||| Sbjct: 77069 aatagaatttcataaaaatcctaaacta 77096
>gb|AC146108.3| Pan troglodytes BAC clone RP43-22F10 from 7, complete sequence Length = 230349 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 gaaaagagtcagaataaaat 30 |||||||||||||||||||| Sbjct: 43614 gaaaagagtcagaataaaat 43595
>gb|AC146056.2| Pan troglodytes BAC clone RP43-89N11 from 7, complete sequence Length = 154447 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 gaaaagagtcagaataaaat 30 |||||||||||||||||||| Sbjct: 86892 gaaaagagtcagaataaaat 86873
>ref|NM_031220.1| Homo sapiens PITPNM family member 3 (PITPNM3), mRNA Length = 3109 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 ggctgcggtggcggcggcgaggcg 414 ||||||||||||||| |||||||| Sbjct: 9 ggctgcggtggcggcagcgaggcg 32
>emb|Z82204.1|HS362G17 Human DNA sequence from clone RP3-362G17 on chromosome X Contains part of the FGF13 gene for fibroblast growth factor 13, complete sequence Length = 75145 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 tgcagcagaaaacttctttg 126 |||||||||||||||||||| Sbjct: 32078 tgcagcagaaaacttctttg 32059
>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09, complete sequence Length = 145070 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gcggtggcggcggcgaggcg 414 |||||||||||||||||||| Sbjct: 124285 gcggtggcggcggcgaggcg 124304 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 gcggtggcggcggcgaggcg 414 |||||||||||||||||||| Sbjct: 15028 gcggtggcggcggcgaggcg 15009
>gb|AC149634.8| Medicago truncatula clone mth2-5i17, complete sequence Length = 116601 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 ctactactgctagacttttt 208 |||||||||||||||||||| Sbjct: 22349 ctactactgctagacttttt 22368
>gb|AC004673.1| Homo sapiens X BAC GSHB-590J15 (Genome Systems Human BAC library) complete sequence Length = 236281 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 gaataaaattgcataaaaat 41 |||||||||||||||||||| Sbjct: 200798 gaataaaattgcataaaaat 200817
>gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete sequence Length = 187707 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcggtggcggcggcgagg 412 |||||||||||||||||||| Sbjct: 52594 ctgcggtggcggcggcgagg 52613
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 ggctgcggtggcggcggcgaggcg 414 |||||||| ||||||||||||||| Sbjct: 1978559 ggctgcggcggcggcggcgaggcg 1978582
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcggtggcggcggcgagg 412 |||||||||||||||||||| Sbjct: 22048050 ctgcggtggcggcggcgagg 22048069 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 tggctgcggtggcggcggcg 409 |||||||||||||||||||| Sbjct: 13894081 tggctgcggtggcggcggcg 13894062
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 tctcgagccctcccgacgag 356 |||||||||||||||||||| Sbjct: 12373445 tctcgagccctcccgacgag 12373426
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gcggtggcggcggcgaggcg 414 |||||||||||||||||||| Sbjct: 21322768 gcggtggcggcggcgaggcg 21322787
>emb|BX823121.1|CNS0A7A6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB91ZD09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1700 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 tggtcgaacgtcttcaatgctgta 160 ||||| |||||||||||||||||| Sbjct: 305 tggtctaacgtcttcaatgctgta 282
>gb|AF334586.1|AF334586 Homo sapiens NIR1 mRNA, complete cds Length = 3109 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 ggctgcggtggcggcggcgaggcg 414 ||||||||||||||| |||||||| Sbjct: 9 ggctgcggtggcggcagcgaggcg 32
>gb|AC154337.2| Mus musculus BAC clone RP23-254P20 from chromosome 17, complete sequence Length = 182101 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 23 aataaaattgcataaaaatcctaaacta 50 |||| |||| |||||||||||||||||| Sbjct: 133583 aatagaatttcataaaaatcctaaacta 133556
>gb|AC011238.8| Homo sapiens BAC clone RP11-374C5 from 2, complete sequence Length = 155764 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 gaataaaattgcataaaaat 41 |||||||||||||||||||| Sbjct: 151859 gaataaaattgcataaaaat 151840
>dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0079G12 Length = 139796 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gcggtggcggcggcgaggcg 414 |||||||||||||||||||| Sbjct: 134682 gcggtggcggcggcgaggcg 134701
>dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0406E03 Length = 201069 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 gcggtggcggcggcgaggcg 414 |||||||||||||||||||| Sbjct: 125845 gcggtggcggcggcgaggcg 125826
>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0057D11 Length = 190790 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gcggtggcggcggcgaggcg 414 |||||||||||||||||||| Sbjct: 43268 gcggtggcggcggcgaggcg 43287
>dbj|AP004458.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0045D08 Length = 160541 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 tctcgagccctcccgacgag 356 |||||||||||||||||||| Sbjct: 132094 tctcgagccctcccgacgag 132075
>dbj|AB025639.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MWL2 Length = 84896 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 137 tggtcgaacgtcttcaatgctgta 160 ||||| |||||||||||||||||| Sbjct: 75539 tggtctaacgtcttcaatgctgta 75562
>dbj|AK121556.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033I04, full insert sequence Length = 1815 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 gcggtggcggcggcgaggcg 414 |||||||||||||||||||| Sbjct: 47 gcggtggcggcggcgaggcg 28
>dbj|AK119904.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-A05, full insert sequence Length = 901 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 ctggctgcggtggcggcggcgagg 412 |||||||||| ||||||||||||| Sbjct: 116 ctggctgcggcggcggcggcgagg 139
>gb|AC009542.2|AC009542 Homo sapiens clone RP11-260N14 from 7q31, complete sequence Length = 160367 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gaaaagagtcagaataaaat 30 |||||||||||||||||||| Sbjct: 118560 gaaaagagtcagaataaaat 118579
>gb|AC009330.5|AC009330 Homo sapiens clone RP11-83M17 from 7q31, complete sequence Length = 174768 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gaaaagagtcagaataaaat 30 |||||||||||||||||||| Sbjct: 115747 gaaaagagtcagaataaaat 115766
>dbj|AK106389.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-E10, full insert sequence Length = 2058 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 ggctgcggtggcggcggcga 410 |||||||||||||||||||| Sbjct: 1388 ggctgcggtggcggcggcga 1369
>dbj|AK105900.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F08, full insert sequence Length = 1399 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 gcggtggcggcggcgaggcg 414 |||||||||||||||||||| Sbjct: 213 gcggtggcggcggcgaggcg 194
>dbj|AK104160.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E09, full insert sequence Length = 901 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 ctggctgcggtggcggcggcgagg 412 |||||||||| ||||||||||||| Sbjct: 116 ctggctgcggcggcggcggcgagg 139
>dbj|AK104030.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-C01, full insert sequence Length = 909 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 ctggctgcggtggcggcggcgagg 412 |||||||||| ||||||||||||| Sbjct: 114 ctggctgcggcggcggcggcgagg 137
>dbj|AK070528.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060D13, full insert sequence Length = 928 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 ctggctgcggtggcggcggcgagg 412 |||||||||| ||||||||||||| Sbjct: 117 ctggctgcggcggcggcggcgagg 140
>dbj|AK067998.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127N17, full insert sequence Length = 2575 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 ctgcggtggcggcggcgagg 412 |||||||||||||||||||| Sbjct: 124 ctgcggtggcggcggcgagg 105
>dbj|AK065299.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N17, full insert sequence Length = 2760 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 gcggtggcggcggcgaggcg 414 |||||||||||||||||||| Sbjct: 101 gcggtggcggcggcgaggcg 82
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ctgcggtggcggcggcgagg 412 |||||||||||||||||||| Sbjct: 22059713 ctgcggtggcggcggcgagg 22059732 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 tggctgcggtggcggcggcg 409 |||||||||||||||||||| Sbjct: 13901423 tggctgcggtggcggcggcg 13901404
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 ggctgcggtggcggcggcgaggcg 414 |||||||| ||||||||||||||| Sbjct: 1986340 ggctgcggcggcggcggcgaggcg 1986363
>dbj|AP006372.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT36C05, TM0215b, complete sequence Length = 84914 Score = 40.1 bits (20), Expect = 6.0 Identities = 38/44 (86%) Strand = Plus / Plus Query: 137 tggtcgaacgtcttcaatgctgtagccgaggggagcttcgtaca 180 |||||||||||||||||| |||| |||| |||||||| |||| Sbjct: 49379 tggtcgaacgtcttcaattatgtaatcgagaggagcttcataca 49422
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gcggtggcggcggcgaggcg 414 |||||||||||||||||||| Sbjct: 28688 gcggtggcggcggcgaggcg 28707
>gb|L19436.1|RICSODAOA Rice mitochondrial manganese-superoxide dismutase (sodAOs1) mRNA, complete cds Length = 878 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 ctggctgcggtggcggcggcgagg 412 |||||||||| ||||||||||||| Sbjct: 83 ctggctgcggcggcggcggcgagg 106
>gb|L34039.1|RICRMSOA Oryza sativa manganese superoxide dismutase (rmsod2) mRNA, complete cds Length = 1352 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 ctggctgcggtggcggcggcgagg 412 |||||||||| ||||||||||||| Sbjct: 566 ctggctgcggcggcggcggcgagg 589
>gb|L34038.1|RICRMSO Oryza sativa manganese superoxide dismutase (rmsod1) mRNA, complete cds Length = 951 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 ctggctgcggtggcggcggcgagg 412 |||||||||| ||||||||||||| Sbjct: 168 ctggctgcggcggcggcggcgagg 191
>dbj|AB026725.1| Oryza sativa (japonica cultivar-group) sodA gene for manganese-superoxide dismutase, complete cds Length = 4937 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 ctggctgcggtggcggcggcgagg 412 |||||||||| ||||||||||||| Sbjct: 1183 ctggctgcggcggcggcggcgagg 1206 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,508,218 Number of Sequences: 3902068 Number of extensions: 3508218 Number of successful extensions: 86198 Number of sequences better than 10.0: 152 Number of HSP's better than 10.0 without gapping: 158 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84248 Number of HSP's gapped (non-prelim): 1886 length of query: 447 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 425 effective length of database: 17,147,199,772 effective search space: 7287559903100 effective search space used: 7287559903100 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
