ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal30k03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ784279.1| Hordeum vulgare subsp. vulgare partial mRNA for ... 141 2e-30
2dbj|AK066766.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 1e-21
3gb|AY773278.1| Zea mays carotenoid cleavage dioxygenase mRNA, co... 88 2e-14
4gb|DQ100346.1| Zea mays carotenoid cleavage dioxygenase 1 (CCD1)... 82 1e-12
5gb|AY106323.1| Zea mays PCO084517 mRNA sequence 82 1e-12
6gb|AY146585.1| Zea mays carotenoid cleavage dioxygenase 1 mRNA, ... 80 5e-12
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 70 5e-09
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 70 5e-09
9emb|AL732378.3|CNS08C91 Oryza sativa chromosome 12, . BAC OSJNBa... 70 5e-09
10emb|BX664710.2|CNS09SC0 Oryza sativa chromosome 12, . PAC P0243A... 70 5e-09
11emb|AJ132927.1|CSA132927 Crocus sativus mRNA for crocetin dialde... 56 7e-05
12gb|DQ100347.1| Zea mays 9,10-9',10' carotenoid cleavage dioxygen... 48 0.018
13gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome 44 0.27
14gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 40 4.3
15gb|AE010451.1| Methanopyrus kandleri AV19 section 150 of 157 of ... 40 4.3
16gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 4.3
17gb|AY646239.1| Brassica rapa subsp. pekinensis 9-cis-epoxycarote... 40 4.3
18gb|AY625111.1| Escherichia coli B HisI gene, partial cds 40 4.3
19gb|AC004855.1| Homo sapiens PAC clone RP4-673O11 from 7, complet... 40 4.3
20gb|AE014075.1| Escherichia coli CFT073, complete genome 40 4.3
21gb|AC142331.1| Pan troglodytes BAC clone RP43-28J15 from 7, comp... 40 4.3
22gb|AC145774.1| Pan troglodytes BAC clone RP43-160F1 from 7, comp... 40 4.3
23gb|CP000243.1| Escherichia coli UTI89, complete genome 40 4.3
24emb|X71970.1|SFRFBAJ S.flexneri bB, galF, rfbA-J, rfbX, gnd, udg... 40 4.3
25gb|AC164250.4| Mus musculus BAC RP24-327O15 (Roswell Park Cance... 40 4.3
26gb|AY657020.1| Escherichia coli O155 O-antigen gene cluster, par... 40 4.3
27gb|AF461121.1| Escherichia coli serotype O55:H7 O-antigen gene c... 40 4.3
28dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
29gb|AC147976.3| Pan troglodytes BAC clone CH251-543E22 from chrom... 40 4.3
30dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
31gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 40 4.3
32emb|CR392343.29| Zebrafish DNA sequence from clone CH211-195G6 i... 40 4.3
33gb|AC155279.5| Mus musculus 6 BAC RP24-85A3 (Roswell Park Cancer... 40 4.3
34gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 40 4.3
35gb|AY220982.1| Escherichia coli O86:B7 O-antigen gene cluster, c... 40 4.3
36dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 40 4.3
37gb|CP000036.1| Shigella boydii Sb227, complete genome 40 4.3
38dbj|D43637.1|ECORFBM Escherichia coli rfb gene cluster encoding ... 40 4.3
39dbj|AB010150.1| Escherichia coli O8 wb gene cluster, complete cds 40 4.3
40dbj|AB008676.1| Escherichia coli 0157 DNA, map position at 46 mi... 40 4.3 
>emb|AJ784279.1| Hordeum vulgare subsp. vulgare partial mRNA for putative carotenoid
           cleavage dioxygenase 1 (ccd1 gene)
          Length = 201

 Score =  141 bits (71), Expect = 2e-30
 Identities = 83/86 (96%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                       
Query: 240 accgccaccgggatcagcagacatggtcttggcatnaatcacattcacttcagatttgcc 299
           ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 201 accgccaccgg-atcagcagacatggtcttggcatcaatcacattcacttcagatttccc 143

                                     
Query: 300 tgtgttctcatcgtgcacaaagaata 325
           ||||||||||||||||||||||||||
Sbjct: 142 tgtgttctcatcgtgcacaaagaata 117
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>dbj|AK066766.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088L06, full
            insert sequence
          Length = 2014

 Score =  111 bits (56), Expect = 1e-21
 Identities = 128/151 (84%), Gaps = 1/151 (0%)
 Strand = Plus / Minus

                                                                        
Query: 175  ccagttgttcctcgttgacgaagaaggcgtggaaaccgtaaggaacccggttcggcagct 234
            |||||||||||||||| |  ||||| || ||||| ||||| ||||| ||| | || ||||
Sbjct: 1807 ccagttgttcctcgtttataaagaaagcatggaatccgtagggaactcggcttggtagct 1748

                                                                        
Query: 235  cgacgaccgccaccgggatcagcagacatggtcttggcatnaatcacattcacttcagat 294
            | || || |||||||| |||||||||||| ||||| |||| ||||||||| |||||||||
Sbjct: 1747 caacaactgccaccgg-atcagcagacattgtctttgcatcaatcacattgacttcagat 1689

                                           
Query: 295  ttgcctgtgttctcatcgtgcacaaagaata 325
            || ||||| ||||| ||||| ||||||||||
Sbjct: 1688 ttccctgtattctcgtcgtggacaaagaata 1658
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>gb|AY773278.1| Zea mays carotenoid cleavage dioxygenase mRNA, complete cds
          Length = 1857

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 110/131 (83%), Gaps = 1/131 (0%)
 Strand = Plus / Minus

                                                                        
Query: 195  aagaaggcgtggaaaccgtaaggaacccggttcggcagctcgacgaccgccaccgggatc 254
            |||||||| ||||| || ||||||||||  || || ||||| || ||||| || || |||
Sbjct: 1602 aagaaggcatggaatccataaggaaccctattaggaagctcaaccaccgcaactgg-atc 1544

                                                                        
Query: 255  agcagacatggtcttggcatnaatcacattcacttcagatttgcctgtgttctcatcgtg 314
            ||||||||| ||||| ||||  || ||||| ||||||||||| ||||||||||| |||||
Sbjct: 1543 agcagacattgtctttgcatcgataacatttacttcagatttccctgtgttctcgtcgtg 1484

                       
Query: 315  cacaaagaata 325
             ||||||||||
Sbjct: 1483 tacaaagaata 1473
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>gb|DQ100346.1| Zea mays carotenoid cleavage dioxygenase 1 (CCD1) mRNA, complete cds
          Length = 1843

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                        
Query: 250  ggatcagcagacatggtcttggcatnaatcacattcacttcagatttgcctgtgttctca 309
            |||||||||||||| ||||| ||||  || ||||| ||||||||||| ||||||||||| 
Sbjct: 1607 ggatcagcagacattgtctttgcatcgataacatttacttcagatttccctgtgttctcg 1548

                            
Query: 310  tcgtgcacaaagaata 325
            ||||| ||||||||||
Sbjct: 1547 tcgtgtacaaagaata 1532
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>gb|AY106323.1| Zea mays PCO084517 mRNA sequence
          Length = 1884

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                        
Query: 250  ggatcagcagacatggtcttggcatnaatcacattcacttcagatttgcctgtgttctca 309
            |||||||||||||| ||||| ||||  || ||||| ||||||||||| ||||||||||| 
Sbjct: 1616 ggatcagcagacattgtctttgcatcgataacatttacttcagatttccctgtgttctcg 1557

                            
Query: 310  tcgtgcacaaagaata 325
            ||||| ||||||||||
Sbjct: 1556 tcgtgtacaaagaata 1541
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>gb|AY146585.1| Zea mays carotenoid cleavage dioxygenase 1 mRNA, partial cds
          Length = 442

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 109/131 (83%), Gaps = 1/131 (0%)
 Strand = Plus / Minus

                                                                       
Query: 195 aagaaggcgtggaaaccgtaaggaacccggttcggcagctcgacgaccgccaccgggatc 254
           |||||||| ||||| || ||||||||||  || || ||||| || ||||| || || |||
Sbjct: 269 aagaaggcatggaatccataaggaaccctattaggaagctcaaccaccgcaactgg-atc 211

                                                                       
Query: 255 agcagacatggtcttggcatnaatcacattcacttcagatttgcctgtgttctcatcgtg 314
           ||||||||| ||||| ||||  || ||||| ||||||||||| ||||| ||||| |||||
Sbjct: 210 agcagacattgtctttgcatcgataacatttacttcagatttccctgtattctcgtcgtg 151

                      
Query: 315 cacaaagaata 325
            ||||||||||
Sbjct: 150 tacaaagaata 140
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 86/102 (84%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                            
Query: 195      aagaaggcgtggaaaccgtaaggaacccggttcggcagctcgacgaccgccaccgggatc 254
                ||||| || ||||| ||||| ||||| ||| | || ||||| || || |||||||| |||
Sbjct: 27507416 aagaaagcatggaatccgtagggaactcggcttggtagctcaacaactgccaccgg-atc 27507358

                                                          
Query: 255      agcagacatggtcttggcatnaatcacattcacttcagattt 296
                ||||||||| ||||| |||| ||||||||| |||||||||||
Sbjct: 27507357 agcagacattgtctttgcatcaatcacattgacttcagattt 27507316
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 86/102 (84%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                            
Query: 195      aagaaggcgtggaaaccgtaaggaacccggttcggcagctcgacgaccgccaccgggatc 254
                ||||| || ||||| ||||| ||||| ||| | || ||||| || || |||||||| |||
Sbjct: 27432974 aagaaagcatggaatccgtagggaactcggcttggtagctcaacaactgccaccgg-atc 27432916

                                                          
Query: 255      agcagacatggtcttggcatnaatcacattcacttcagattt 296
                ||||||||| ||||| |||| ||||||||| |||||||||||
Sbjct: 27432915 agcagacattgtctttgcatcaatcacattgacttcagattt 27432874
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>emb|AL732378.3|CNS08C91 Oryza sativa chromosome 12, . BAC OSJNBa0063N15 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 109222

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 86/102 (84%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                         
Query: 195   aagaaggcgtggaaaccgtaaggaacccggttcggcagctcgacgaccgccaccgggatc 254
             ||||| || ||||| ||||| ||||| ||| | || ||||| || || |||||||| |||
Sbjct: 83330 aagaaagcatggaatccgtagggaactcggcttggtagctcaacaactgccaccgg-atc 83272

                                                       
Query: 255   agcagacatggtcttggcatnaatcacattcacttcagattt 296
             ||||||||| ||||| |||| ||||||||| |||||||||||
Sbjct: 83271 agcagacattgtctttgcatcaatcacattgacttcagattt 83230
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>emb|BX664710.2|CNS09SC0 Oryza sativa chromosome 12, . PAC P0243A04 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 78611

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 86/102 (84%), Gaps = 1/102 (0%)
 Strand = Plus / Plus

                                                                         
Query: 195   aagaaggcgtggaaaccgtaaggaacccggttcggcagctcgacgaccgccaccgggatc 254
             ||||| || ||||| ||||| ||||| ||| | || ||||| || || |||||||| |||
Sbjct: 59578 aagaaagcatggaatccgtagggaactcggcttggtagctcaacaactgccaccgg-atc 59636

                                                       
Query: 255   agcagacatggtcttggcatnaatcacattcacttcagattt 296
             ||||||||| ||||| |||| ||||||||| |||||||||||
Sbjct: 59637 agcagacattgtctttgcatcaatcacattgacttcagattt 59678
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>emb|AJ132927.1|CSA132927 Crocus sativus mRNA for crocetin dialdehyde
          Length = 1686

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                        
Query: 259  gacatggtcttggcatnaatcacattcacttcagatttgcctgtgttctcatcgtgcaca 318
            ||||| ||||||||||  || || || ||||||||||| || ||||||||||| || |||
Sbjct: 1556 gacattgtcttggcatcgattacgtttacttcagatttcccagtgttctcatcatgtaca 1497

                   
Query: 319  aagaata 325
            |||||||
Sbjct: 1496 aagaata 1490
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>gb|DQ100347.1| Zea mays 9,10-9',10' carotenoid cleavage dioxygenase 1 (CCD1) gene,
            complete cds
          Length = 8665

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 250  ggatcagcagacatggtcttggcatnaatcacattcacttcagattt 296
            |||||||||||||| ||||| ||||  || ||||| |||||||||||
Sbjct: 5159 ggatcagcagacattgtctttgcatcgataacatttacttcagattt 5113



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 298  cctgtgttctcatcgtgcacaaagaata 325
            ||||||||||| ||||| ||||||||||
Sbjct: 4921 cctgtgttctcgtcgtgtacaaagaata 4894
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>gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome
          Length = 1181404

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 164    ttgttgatgtaccagttgttcc 185
              ||||||||||||||||||||||
Sbjct: 822661 ttgttgatgtaccagttgttcc 822682
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 193     cgaagaaggcgtggaaaccg 212
               ||||||||||||||||||||
Sbjct: 2103404 cgaagaaggcgtggaaaccg 2103423
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>gb|AE010451.1| Methanopyrus kandleri AV19 section 150 of 157 of the complete genome
          Length = 10685

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 239  gaccgccaccgggatcagca 258
            ||||||||||||||||||||
Sbjct: 8709 gaccgccaccgggatcagca 8728
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    gttcggcagctcgacgaccg 243
              ||||||||||||||||||||
Sbjct: 687853 gttcggcagctcgacgaccg 687872
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>gb|AY646239.1| Brassica rapa subsp. pekinensis 9-cis-epoxycarotenoid dioxygenase
            mRNA, complete cds
          Length = 2020

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 89/111 (80%), Gaps = 1/111 (0%)
 Strand = Plus / Minus

                                                                        
Query: 177  agttgttcctcgttgacgaagaaggcgtggaaaccgtaaggaacccggttcggcagctcg 236
            |||||||||||  | || |||||||| ||||| || || |||||||  | ||||||||| 
Sbjct: 1755 agttgttcctctgtaacaaagaaggcatggaagccatatggaaccctatgcggcagctcc 1696

                                                               
Query: 237  acgaccgccaccgggatcagcagacatggtcttggcatnaatcacattcac 287
            || || ||||| ||  ||||||||||| || || || | ||||||||||||
Sbjct: 1695 accactgccactggc-tcagcagacattgtttttgcgtcaatcacattcac 1646
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>gb|AY625111.1| Escherichia coli B HisI gene, partial cds
          Length = 503

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 cgaagaaggcgtggaaaccg 212
           ||||||||||||||||||||
Sbjct: 111 cgaagaaggcgtggaaaccg 92
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>gb|AC004855.1| Homo sapiens PAC clone RP4-673O11 from 7, complete sequence
          Length = 74816

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   atcactcactcctcttcaca 156
             ||||||||||||||||||||
Sbjct: 46934 atcactcactcctcttcaca 46915
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 193     cgaagaaggcgtggaaaccg 212
               ||||||||||||||||||||
Sbjct: 2385123 cgaagaaggcgtggaaaccg 2385142
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>gb|AC142331.1| Pan troglodytes BAC clone RP43-28J15 from 7, complete sequence
          Length = 140363

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    atcactcactcctcttcaca 156
              ||||||||||||||||||||
Sbjct: 134804 atcactcactcctcttcaca 134823
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>gb|AC145774.1| Pan troglodytes BAC clone RP43-160F1 from 7, complete sequence
          Length = 208178

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    atcactcactcctcttcaca 156
              ||||||||||||||||||||
Sbjct: 137653 atcactcactcctcttcaca 137672
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 193     cgaagaaggcgtggaaaccg 212
               ||||||||||||||||||||
Sbjct: 2235473 cgaagaaggcgtggaaaccg 2235492
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>emb|X71970.1|SFRFBAJ S.flexneri bB, galF, rfbA-J, rfbX, gnd, udg, rol and rfc genes
          Length = 18059

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   cgaagaaggcgtggaaaccg 212
             ||||||||||||||||||||
Sbjct: 17607 cgaagaaggcgtggaaaccg 17588
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>gb|AC164250.4| Mus musculus  BAC RP24-327O15 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 221612

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   gtatcactcactcctcttca 154
             ||||||||||||||||||||
Sbjct: 98674 gtatcactcactcctcttca 98655
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>gb|AY657020.1| Escherichia coli O155 O-antigen gene cluster, partial sequence
          Length = 12755

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   cgaagaaggcgtggaaaccg 212
             ||||||||||||||||||||
Sbjct: 12567 cgaagaaggcgtggaaaccg 12548
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>gb|AF461121.1| Escherichia coli serotype O55:H7 O-antigen gene cluster, complete
             sequence
          Length = 27730

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   cgaagaaggcgtggaaaccg 212
             ||||||||||||||||||||
Sbjct: 21279 cgaagaaggcgtggaaaccg 21260
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 158      ctatgcttgttgatgtaccagttg 181
                |||||||||||||| |||||||||
Sbjct: 25981712 ctatgcttgttgatttaccagttg 25981689
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>gb|AC147976.3| Pan troglodytes BAC clone CH251-543E22 from chromosome 7, complete
             sequence
          Length = 231294

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   atcactcactcctcttcaca 156
             ||||||||||||||||||||
Sbjct: 55241 atcactcactcctcttcaca 55222
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>dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0707D10
          Length = 172003

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 158   ctatgcttgttgatgtaccagttg 181
             |||||||||||||| |||||||||
Sbjct: 77779 ctatgcttgttgatttaccagttg 77756
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 193     cgaagaaggcgtggaaaccg 212
               ||||||||||||||||||||
Sbjct: 2086317 cgaagaaggcgtggaaaccg 2086336
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>emb|CR392343.29| Zebrafish DNA sequence from clone CH211-195G6 in linkage group 22,
              complete sequence
          Length = 194465

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     tacataaatggtgtcaatat 100
              ||||||||||||||||||||
Sbjct: 113754 tacataaatggtgtcaatat 113773
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>gb|AC155279.5| Mus musculus 6 BAC RP24-85A3 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 201663

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    gtatcactcactcctcttca 154
              ||||||||||||||||||||
Sbjct: 182329 gtatcactcactcctcttca 182310
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 193     cgaagaaggcgtggaaaccg 212
               ||||||||||||||||||||
Sbjct: 2839344 cgaagaaggcgtggaaaccg 2839363
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>gb|AY220982.1| Escherichia coli O86:B7 O-antigen gene cluster, complete sequence
          Length = 19288

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   cgaagaaggcgtggaaaccg 212
             ||||||||||||||||||||
Sbjct: 19180 cgaagaaggcgtggaaaccg 19161
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 193     cgaagaaggcgtggaaaccg 212
               ||||||||||||||||||||
Sbjct: 2769131 cgaagaaggcgtggaaaccg 2769150
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    cgaagaaggcgtggaaaccg 212
              ||||||||||||||||||||
Sbjct: 866615 cgaagaaggcgtggaaaccg 866634
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>dbj|D43637.1|ECORFBM Escherichia coli rfb gene cluster encoding phosphomannomutase,
             GDP-mannose pyrophosphorylase, mannosyltransferase, etc
          Length = 13316

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   cgaagaaggcgtggaaaccg 212
             ||||||||||||||||||||
Sbjct: 12417 cgaagaaggcgtggaaaccg 12398
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>dbj|AB010150.1| Escherichia coli O8 wb gene cluster, complete cds
          Length = 15295

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   cgaagaaggcgtggaaaccg 212
             ||||||||||||||||||||
Sbjct: 14071 cgaagaaggcgtggaaaccg 14052
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>dbj|AB008676.1| Escherichia coli 0157 DNA, map position at 46 min., complete cds
          Length = 31482

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   cgaagaaggcgtggaaaccg 212
             ||||||||||||||||||||
Sbjct: 19860 cgaagaaggcgtggaaaccg 19841


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,630,573
Number of Sequences: 3902068
Number of extensions: 2630573
Number of successful extensions: 51056
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 50884
Number of HSP's gapped (non-prelim): 172
length of query: 325
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 303
effective length of database: 17,147,199,772
effective search space: 5195601530916
effective search space used: 5195601530916
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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