ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal30k02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474946.1| Oryza sativa (japonica cultivar-group), predic... 139 1e-29
2emb|AL606634.2|OSJN00066 Oryza sativa genomic DNA, chromosome 4,... 139 1e-29
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
4dbj|AK071801.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
5ref|XM_474948.1| Oryza sativa (japonica cultivar-group), predic... 111 3e-21
6dbj|AK120831.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 2e-07
7dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.009
8dbj|AP005862.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.009
9dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.009
10dbj|AK067622.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.009
11dbj|AP004945.1| Lotus japonicus genomic DNA, chromosome 1, clone... 44 0.55
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.2
13emb|AL591377.4| Human DNA sequence from clone RP11-102M4 on chro... 42 2.2
14emb|AL512643.9| Human DNA sequence from clone RP11-265B7 on chro... 42 2.2
15emb|AL627280.1| Salmonella enterica serovar Typhi (Salmonella ty... 42 2.2
16gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.2
17emb|BX322616.8| Zebrafish DNA sequence from clone DKEY-21K24 in ... 42 2.2
18gb|AC153557.8| Mus musculus 10 BAC RP23-203H20 (Roswell Park Can... 42 2.2
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
20emb|AL954709.15| Zebrafish DNA sequence from clone CH211-142N21 ... 42 2.2
21emb|CR381605.5| Zebrafish DNA sequence from clone CH211-156J19 i... 42 2.2
22gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 42 2.2
23gb|AC155076.17| Mus musculus chromosome 1, clone RP24-257G18, co... 42 2.2
24gb|AC022351.3| Drosophila melanogaster clone BACR29G15, complete... 40 8.6
25ref|XM_723884.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 8.6
26emb|AL356961.13| Human DNA sequence from clone RP11-450H6 on chr... 40 8.6
27gb|AY130009.1| Homo sapiens MU-MB-17.262 mRNA sequence 40 8.6
28emb|BX883043.1| Rattus norvegicus chromosome 20, major histocomp... 40 8.6
29gb|AC079386.23| Homo sapiens 12 BAC RP11-12K13 (Roswell Park Can... 40 8.6
30gb|AC120734.5| Rattus norvegicus BAC CH230-220D1 (Children's Ho... 40 8.6
31gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold 40 8.6
32emb|AJ544209.1|GSP544209 Gyromitra esculenta 18S rRNA gene (part... 40 8.6
33emb|AJ544208.1|GSP544208 Gyromitra esculenta 18S rRNA gene (part... 40 8.6
34dbj|AB113399.1| Rattus norvegicus rCNR gene for cadherin-related... 40 8.6
35gb|AE003502.4| Drosophila melanogaster chromosome X, section 54 ... 40 8.6
36gb|AC159649.3| Mus musculus BAC clone RP23-46D6 from chromosome ... 40 8.6
37gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 8.6 
>ref|XM_474946.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1566

 Score =  139 bits (70), Expect = 1e-29
 Identities = 208/254 (81%)
 Strand = Plus / Minus

                                                                        
Query: 79   aatccgttcttccttttcgggttgcatcccatgtcctggcatagttgatcattgtaccaa 138
            ||||||||||||||  |||| ||||| ||||||||| ||||||| |||||||||||||| 
Sbjct: 1499 aatccgttcttcctcctcggattgcaccccatgtcccggcatagctgatcattgtaccag 1440

                                                                        
Query: 139  atatgaacaattccaatgcatgacctacggaaatagtctcgagagtagcgcttcataaac 198
            || ||||  ||||| ||||| || || || || ||  | ||||| ||||||||||| |||
Sbjct: 1439 atgtgaaggattccgatgcaggatctgcgaaagtaaccacgagaatagcgcttcatgaac 1380

                                                                        
Query: 199  ttctcccattcaaggacatctctttgcatttctctgacacttggcaatctgaaaccacca 258
            ||||||||||| ||||||||  | |||||  | ||||  |||||||| ||||| ||||||
Sbjct: 1379 ttctcccattccaggacatcattctgcatcacactgatgcttggcaacctgaagccacca 1320

                                                                        
Query: 259  tccataaaatgggatatccacttggccataagttctgttgtatatatatttgtcaagctc 318
            ||||| ||||| |  | ||||||||||   | ||||| ||| || | ||||| |||||||
Sbjct: 1319 tccatgaaatgtgccagccacttggcccgtaattctgatgtgtagagatttgccaagctc 1260

                          
Query: 319  tctgaatagccgat 332
            ||||||||||||||
Sbjct: 1259 tctgaatagccgat 1246



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 521  gcacaccttcttcacaaaagctgaatgtctttgatttctt 560
            |||||||||| |  |||||||| |||||||||||||||||
Sbjct: 1057 gcacaccttccttgcaaaagctaaatgtctttgatttctt 1018
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>emb|AL606634.2|OSJN00066 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072N21,
             complete sequence
          Length = 130433

 Score =  139 bits (70), Expect = 1e-29
 Identities = 208/254 (81%)
 Strand = Plus / Plus

                                                                         
Query: 79    aatccgttcttccttttcgggttgcatcccatgtcctggcatagttgatcattgtaccaa 138
             ||||||||||||||  |||| ||||| ||||||||| ||||||| |||||||||||||| 
Sbjct: 13363 aatccgttcttcctcctcggattgcaccccatgtcccggcatagctgatcattgtaccag 13422

                                                                         
Query: 139   atatgaacaattccaatgcatgacctacggaaatagtctcgagagtagcgcttcataaac 198
             || ||||  ||||| ||||| || || || || ||  | ||||| ||||||||||| |||
Sbjct: 13423 atgtgaaggattccgatgcaggatctgcgaaagtaaccacgagaatagcgcttcatgaac 13482

                                                                         
Query: 199   ttctcccattcaaggacatctctttgcatttctctgacacttggcaatctgaaaccacca 258
             ||||||||||| ||||||||  | |||||  | ||||  |||||||| ||||| ||||||
Sbjct: 13483 ttctcccattccaggacatcattctgcatcacactgatgcttggcaacctgaagccacca 13542

                                                                         
Query: 259   tccataaaatgggatatccacttggccataagttctgttgtatatatatttgtcaagctc 318
             ||||| ||||| |  | ||||||||||   | ||||| ||| || | ||||| |||||||
Sbjct: 13543 tccatgaaatgtgccagccacttggcccgtaattctgatgtgtagagatttgccaagctc 13602

                           
Query: 319   tctgaatagccgat 332
             ||||||||||||||
Sbjct: 13603 tctgaatagccgat 13616



 Score =  111 bits (56), Expect = 3e-21
 Identities = 206/256 (80%)
 Strand = Plus / Plus

                                                                         
Query: 77    aaaatccgttcttccttttcgggttgcatcccatgtcctggcatagttgatcattgtacc 136
             ||||||| ||||||||  |||||||||| ||||||||| ||||||| | |||||||||||
Sbjct: 32683 aaaatccattcttcctcctcgggttgcaccccatgtcccggcatagcttatcattgtacc 32742

                                                                         
Query: 137   aaatatgaacaattccaatgcatgacctacggaaatagtctcgagagtagcgcttcataa 196
             | || ||||  | ||| ||||| || || || || ||  | ||||| ||||||||||| |
Sbjct: 32743 agatgtgaaggaatccgatgcaggatctgcgaaagtaagcacgagaatagcgcttcatga 32802

                                                                         
Query: 197   acttctcccattcaaggacatctctttgcatttctctgacacttggcaatctgaaaccac 256
             |||||||||||||  |||||||  | |||||  | ||||  |||||||| ||||| ||||
Sbjct: 32803 acttctcccattcctggacatcattctgcatcacactgatgcttggcaacctgaagccac 32862

                                                                         
Query: 257   catccataaaatgggatatccacttggccataagttctgttgtatatatatttgtcaagc 316
             ||||||| ||||| |  | |||||||||| | | ||||| ||| || |  |||| |||||
Sbjct: 32863 catccatgaaatgtgcgagccacttggcccttaattctgatgtgtacaggtttgccaagc 32922

                             
Query: 317   tctctgaatagccgat 332
             | ||||||||||||||
Sbjct: 32923 tttctgaatagccgat 32938



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 90/110 (81%)
 Strand = Plus / Plus

                                                                         
Query: 506   attcaccttcaacttgcacaccttcttcacaaaagctgaatgtctttgatttcttaagga 565
             |||| ||||||||  |||||||||| |  |||||||| ||||||||||||||||| || |
Sbjct: 33223 attcgccttcaacaagcacaccttcattgcaaaagctaaatgtctttgatttcttgagaa 33282

                                                               
Query: 566   tgatgctaccttcctcaatattcttgtaatgatccttcggtgcaatggca 615
              |||||| ||||| || |   |||||||||| || || |||| |||||||
Sbjct: 33283 cgatgctgccttcttctaatctcttgtaatggtctttgggtgtaatggca 33332



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 521   gcacaccttcttcacaaaagctgaatgtctttgatttctt 560
             |||||||||| |  |||||||| |||||||||||||||||
Sbjct: 13906 gcacaccttccttgcaaaagctaaatgtctttgatttctt 13945
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  139 bits (70), Expect = 1e-29
 Identities = 208/254 (81%)
 Strand = Plus / Plus

                                                                           
Query: 79      aatccgttcttccttttcgggttgcatcccatgtcctggcatagttgatcattgtaccaa 138
               ||||||||||||||  |||| ||||| ||||||||| ||||||| |||||||||||||| 
Sbjct: 8202850 aatccgttcttcctcctcggattgcaccccatgtcccggcatagctgatcattgtaccag 8202909

                                                                           
Query: 139     atatgaacaattccaatgcatgacctacggaaatagtctcgagagtagcgcttcataaac 198
               || ||||  ||||| ||||| || || || || ||  | ||||| ||||||||||| |||
Sbjct: 8202910 atgtgaaggattccgatgcaggatctgcgaaagtaaccacgagaatagcgcttcatgaac 8202969

                                                                           
Query: 199     ttctcccattcaaggacatctctttgcatttctctgacacttggcaatctgaaaccacca 258
               ||||||||||| ||||||||  | |||||  | ||||  |||||||| ||||| ||||||
Sbjct: 8202970 ttctcccattccaggacatcattctgcatcacactgatgcttggcaacctgaagccacca 8203029

                                                                           
Query: 259     tccataaaatgggatatccacttggccataagttctgttgtatatatatttgtcaagctc 318
               ||||| ||||| |  | ||||||||||   | ||||| ||| || | ||||| |||||||
Sbjct: 8203030 tccatgaaatgtgccagccacttggcccgtaattctgatgtgtagagatttgccaagctc 8203089

                             
Query: 319     tctgaatagccgat 332
               ||||||||||||||
Sbjct: 8203090 tctgaatagccgat 8203103



 Score =  111 bits (56), Expect = 3e-21
 Identities = 206/256 (80%)
 Strand = Plus / Plus

                                                                           
Query: 77      aaaatccgttcttccttttcgggttgcatcccatgtcctggcatagttgatcattgtacc 136
               ||||||| ||||||||  |||||||||| ||||||||| ||||||| | |||||||||||
Sbjct: 8222170 aaaatccattcttcctcctcgggttgcaccccatgtcccggcatagcttatcattgtacc 8222229

                                                                           
Query: 137     aaatatgaacaattccaatgcatgacctacggaaatagtctcgagagtagcgcttcataa 196
               | || ||||  | ||| ||||| || || || || ||  | ||||| ||||||||||| |
Sbjct: 8222230 agatgtgaaggaatccgatgcaggatctgcgaaagtaagcacgagaatagcgcttcatga 8222289

                                                                           
Query: 197     acttctcccattcaaggacatctctttgcatttctctgacacttggcaatctgaaaccac 256
               |||||||||||||  |||||||  | |||||  | ||||  |||||||| ||||| ||||
Sbjct: 8222290 acttctcccattcctggacatcattctgcatcacactgatgcttggcaacctgaagccac 8222349

                                                                           
Query: 257     catccataaaatgggatatccacttggccataagttctgttgtatatatatttgtcaagc 316
               ||||||| ||||| |  | |||||||||| | | ||||| ||| || |  |||| |||||
Sbjct: 8222350 catccatgaaatgtgcgagccacttggcccttaattctgatgtgtacaggtttgccaagc 8222409

                               
Query: 317     tctctgaatagccgat 332
               | ||||||||||||||
Sbjct: 8222410 tttctgaatagccgat 8222425



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 90/110 (81%)
 Strand = Plus / Plus

                                                                           
Query: 506     attcaccttcaacttgcacaccttcttcacaaaagctgaatgtctttgatttcttaagga 565
               |||| ||||||||  |||||||||| |  |||||||| ||||||||||||||||| || |
Sbjct: 8222710 attcgccttcaacaagcacaccttcattgcaaaagctaaatgtctttgatttcttgagaa 8222769

                                                                 
Query: 566     tgatgctaccttcctcaatattcttgtaatgatccttcggtgcaatggca 615
                |||||| ||||| || |   |||||||||| || || |||| |||||||
Sbjct: 8222770 cgatgctgccttcttctaatctcttgtaatggtctttgggtgtaatggca 8222819



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                       
Query: 521     gcacaccttcttcacaaaagctgaatgtctttgatttctt 560
               |||||||||| |  |||||||| |||||||||||||||||
Sbjct: 8203393 gcacaccttccttgcaaaagctaaatgtctttgatttctt 8203432
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>dbj|AK071801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110J22, full
            insert sequence
          Length = 1787

 Score =  139 bits (70), Expect = 1e-29
 Identities = 208/254 (81%)
 Strand = Plus / Minus

                                                                        
Query: 79   aatccgttcttccttttcgggttgcatcccatgtcctggcatagttgatcattgtaccaa 138
            ||||||||||||||  |||| ||||| ||||||||| ||||||| |||||||||||||| 
Sbjct: 1552 aatccgttcttcctcctcggattgcaccccatgtcccggcatagctgatcattgtaccag 1493

                                                                        
Query: 139  atatgaacaattccaatgcatgacctacggaaatagtctcgagagtagcgcttcataaac 198
            || ||||  ||||| ||||| || || || || ||  | ||||| ||||||||||| |||
Sbjct: 1492 atgtgaaggattccgatgcaggatctgcgaaagtaaccacgagaatagcgcttcatgaac 1433

                                                                        
Query: 199  ttctcccattcaaggacatctctttgcatttctctgacacttggcaatctgaaaccacca 258
            ||||||||||| ||||||||  | |||||  | ||||  |||||||| ||||| ||||||
Sbjct: 1432 ttctcccattccaggacatcattctgcatcacactgatgcttggcaacctgaagccacca 1373

                                                                        
Query: 259  tccataaaatgggatatccacttggccataagttctgttgtatatatatttgtcaagctc 318
            ||||| ||||| |  | ||||||||||   | ||||| ||| || | ||||| |||||||
Sbjct: 1372 tccatgaaatgtgccagccacttggcccgtaattctgatgtgtagagatttgccaagctc 1313

                          
Query: 319  tctgaatagccgat 332
            ||||||||||||||
Sbjct: 1312 tctgaatagccgat 1299



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 427  gaagtgaacatgtccttgatcttttgatc 455
            ||||||||||| ||||||||||| |||||
Sbjct: 1204 gaagtgaacatctccttgatcttctgatc 1176
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>ref|XM_474948.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1566

 Score =  111 bits (56), Expect = 3e-21
 Identities = 206/256 (80%)
 Strand = Plus / Minus

                                                                        
Query: 77   aaaatccgttcttccttttcgggttgcatcccatgtcctggcatagttgatcattgtacc 136
            ||||||| ||||||||  |||||||||| ||||||||| ||||||| | |||||||||||
Sbjct: 1501 aaaatccattcttcctcctcgggttgcaccccatgtcccggcatagcttatcattgtacc 1442

                                                                        
Query: 137  aaatatgaacaattccaatgcatgacctacggaaatagtctcgagagtagcgcttcataa 196
            | || ||||  | ||| ||||| || || || || ||  | ||||| ||||||||||| |
Sbjct: 1441 agatgtgaaggaatccgatgcaggatctgcgaaagtaagcacgagaatagcgcttcatga 1382

                                                                        
Query: 197  acttctcccattcaaggacatctctttgcatttctctgacacttggcaatctgaaaccac 256
            |||||||||||||  |||||||  | |||||  | ||||  |||||||| ||||| ||||
Sbjct: 1381 acttctcccattcctggacatcattctgcatcacactgatgcttggcaacctgaagccac 1322

                                                                        
Query: 257  catccataaaatgggatatccacttggccataagttctgttgtatatatatttgtcaagc 316
            ||||||| ||||| |  | |||||||||| | | ||||| ||| || |  |||| |||||
Sbjct: 1321 catccatgaaatgtgcgagccacttggcccttaattctgatgtgtacaggtttgccaagc 1262

                            
Query: 317  tctctgaatagccgat 332
            | ||||||||||||||
Sbjct: 1261 tttctgaatagccgat 1246



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 90/110 (81%)
 Strand = Plus / Minus

                                                                        
Query: 506  attcaccttcaacttgcacaccttcttcacaaaagctgaatgtctttgatttcttaagga 565
            |||| ||||||||  |||||||||| |  |||||||| ||||||||||||||||| || |
Sbjct: 1072 attcgccttcaacaagcacaccttcattgcaaaagctaaatgtctttgatttcttgagaa 1013

                                                              
Query: 566  tgatgctaccttcctcaatattcttgtaatgatccttcggtgcaatggca 615
             |||||| ||||| || |   |||||||||| || || |||| |||||||
Sbjct: 1012 cgatgctgccttcttctaatctcttgtaatggtctttgggtgtaatggca 963
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>dbj|AK120831.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019L05, full
           insert sequence
          Length = 1003

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 120/149 (80%)
 Strand = Plus / Minus

                                                                       
Query: 184 tagcgcttcataaacttctcccattcaaggacatctctttgcatttctctgacacttggc 243
           ||||||||||| ||| ||| |||||| ||| ||||  | |||||  | ||||  ||||||
Sbjct: 658 tagcgcttcatgaacgtctaccattccagggcatcattctgcatcacactgatgcttggc 599

                                                                       
Query: 244 aatctgaaaccaccatccataaaatgggatatccacttggccataagttctgttgtatat 303
           || ||||| ||||||||||| ||||| |  | ||||||||||   | ||||| ||| || 
Sbjct: 598 aacctgaagccaccatccatgaaatgtgccagccacttggcccgtaattctgatgtgtag 539

                                        
Query: 304 atatttgtcaagctctctgaatagccgat 332
           | ||||| |||||||||||||||||||||
Sbjct: 538 agatttgccaagctctctgaatagccgat 510



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 521 gcacaccttcttcacaaaagctgaatgtctttgatttctt 560
           |||||||||| |  |||||||| |||||||||||||||||
Sbjct: 321 gcacaccttccttgcaaaagctaaatgtctttgatttctt 282



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 65/80 (81%)
 Strand = Plus / Minus

                                                                       
Query: 79  aatccgttcttccttttcgggttgcatcccatgtcctggcatagttgatcattgtaccaa 138
           ||||||||||||||  |||| |||   ||||||| | ||| ||| |||||||||||||| 
Sbjct: 763 aatccgttcttcctcctcggattgacccccatgtgccggcctagctgatcattgtaccag 704

                               
Query: 139 atatgaacaattccaatgca 158
           || ||||  ||||| |||||
Sbjct: 703 atgtgaatgattccgatgca 684
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 85       ttcttccttttcgggttgcatcccatgtcctggcata 121
                ||||||||||| ||||||||||| ||||| |||||||
Sbjct: 21385032 ttcttccttttagggttgcatccaatgtcttggcata 21385068
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>dbj|AP005862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0038K02
          Length = 118635

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                   
Query: 85     ttcttccttttcgggttgcatcccatgtcctggcata 121
              ||||||||||| ||||||||||| ||||| |||||||
Sbjct: 117411 ttcttccttttagggttgcatccaatgtcttggcata 117447
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>dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1210_A07
          Length = 131394

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                 
Query: 85   ttcttccttttcgggttgcatcccatgtcctggcata 121
            ||||||||||| ||||||||||| ||||| |||||||
Sbjct: 2137 ttcttccttttagggttgcatccaatgtcttggcata 2173
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>dbj|AK067622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108A19, full
            insert sequence
          Length = 1856

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 85   ttcttccttttcgggttgcatcccatgtcctggcata 121
            ||||||||||| ||||||||||| ||||| |||||||
Sbjct: 1525 ttcttccttttagggttgcatccaatgtcttggcata 1489
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>dbj|AP004945.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT43B20, TM0117b,
             complete sequence
          Length = 114918

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 104   atcccatgtcctggcatagttgatca 129
             |||||||||||| |||||||||||||
Sbjct: 19052 atcccatgtccttgcatagttgatca 19077
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 291     ttctgttgtatatatatttgt 311
               |||||||||||||||||||||
Sbjct: 1192650 ttctgttgtatatatatttgt 1192670
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>emb|AL591377.4| Human DNA sequence from clone RP11-102M4 on chromosome 9 Contains the
             3' end of the GRIN3A gene for glutamate receptor,
             ionotropic, N-methyl-D-aspartate 3A (NR3A, NMDAR-L) and
             the 3' end of the RNF20 gene for ring finger protein 20
             (FLJ11189, FLJ20382, KAIA2779), complete sequence
          Length = 143145

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 535   caaaagctgaatgtctttgat 555
             |||||||||||||||||||||
Sbjct: 92185 caaaagctgaatgtctttgat 92165
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>emb|AL512643.9| Human DNA sequence from clone RP11-265B7 on chromosome 9 Contains the
            5' end of a novel gene (FLJ25416), the 3' end of a novel
            gene and a novel gene, complete sequence
          Length = 116806

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 235  acacttggcaatctgaaaccaccatccat 263
            |||||||||||| ||| ||||||||||||
Sbjct: 5595 acacttggcaatgtgacaccaccatccat 5623
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>emb|AL627280.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
             complete chromosome; segment 16/20
          Length = 245050

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 178   cgagagtagcgcttcataaac 198
             |||||||||||||||||||||
Sbjct: 12028 cgagagtagcgcttcataaac 12008
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>gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08,
             complete sequence
          Length = 100986

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 291   ttctgttgtatatatatttgt 311
             |||||||||||||||||||||
Sbjct: 96354 ttctgttgtatatatatttgt 96374
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>emb|BX322616.8| Zebrafish DNA sequence from clone DKEY-21K24 in linkage group 25,
             complete sequence
          Length = 232304

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 254   caccatccataaaatgggata 274
             |||||||||||||||||||||
Sbjct: 43078 caccatccataaaatgggata 43098
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>gb|AC153557.8| Mus musculus 10 BAC RP23-203H20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 233640

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 549    ctttgatttcttaaggatgat 569
              |||||||||||||||||||||
Sbjct: 189970 ctttgatttcttaaggatgat 189950
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 291     ttctgttgtatatatatttgt 311
               |||||||||||||||||||||
Sbjct: 1192648 ttctgttgtatatatatttgt 1192668
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>emb|AL954709.15| Zebrafish DNA sequence from clone CH211-142N21 in linkage group 7,
             complete sequence
          Length = 162309

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 296   ttgtatatatatttgtcaagc 316
             |||||||||||||||||||||
Sbjct: 21350 ttgtatatatatttgtcaagc 21370
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>emb|CR381605.5| Zebrafish DNA sequence from clone CH211-156J19 in linkage group 21,
              complete sequence
          Length = 180526

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 254    caccatccataaaatgggata 274
              |||||||||||||||||||||
Sbjct: 136091 caccatccataaaatgggata 136071
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 178     cgagagtagcgcttcataaac 198
               |||||||||||||||||||||
Sbjct: 3725680 cgagagtagcgcttcataaac 3725660
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>gb|AC155076.17| Mus musculus chromosome 1, clone RP24-257G18, complete sequence
          Length = 224817

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 217    tctctttgcatttctctgaca 237
              |||||||||||||||||||||
Sbjct: 157365 tctctttgcatttctctgaca 157345
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>gb|AC022351.3| Drosophila melanogaster clone BACR29G15, complete sequence
          Length = 179396

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   caaatatgaacaattccaat 155
             ||||||||||||||||||||
Sbjct: 47187 caaatatgaacaattccaat 47206
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>ref|XM_723884.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01251)
            partial mRNA
          Length = 2112

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 129  attgtaccaaatatgaacaa 148
            ||||||||||||||||||||
Sbjct: 1924 attgtaccaaatatgaacaa 1943
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>emb|AL356961.13| Human DNA sequence from clone RP11-450H6 on chromosome 13 Contains
           two novel genes and two CpG islands, complete sequence
          Length = 99469

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 gtatatatatttgtcaagct 317
           ||||||||||||||||||||
Sbjct: 928 gtatatatatttgtcaagct 909
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>gb|AY130009.1| Homo sapiens MU-MB-17.262 mRNA sequence
          Length = 1942

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 gtatatatatttgtcaagct 317
           ||||||||||||||||||||
Sbjct: 790 gtatatatatttgtcaagct 771
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>emb|BX883043.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 2/11
          Length = 347664

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 301    tatatatttgtcaagctctctgaatagc 328
              |||||||||||||||||  |||||||||
Sbjct: 139631 tatatatttgtcaagcttactgaatagc 139658
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>gb|AC079386.23| Homo sapiens 12 BAC RP11-12K13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 154172

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 221    tttgcatttctctgacactt 240
              ||||||||||||||||||||
Sbjct: 129112 tttgcatttctctgacactt 129093
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>gb|AC120734.5| Rattus norvegicus  BAC CH230-220D1 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 232990

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 301   tatatatttgtcaagctctctgaatagc 328
             |||||||||||||||||  |||||||||
Sbjct: 27388 tatatatttgtcaagcttactgaatagc 27361
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>gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold
          Length = 527158

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   tttgcatttctctgacactt 240
             ||||||||||||||||||||
Sbjct: 17655 tttgcatttctctgacactt 17674
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>emb|AJ544209.1|GSP544209 Gyromitra esculenta 18S rRNA gene (partial), ITS1, 5.8S rRNA gene,
           ITS2 and 28S rRNA gene (partial), isolate m954
          Length = 846

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 584 tattcttgtaatgatccttc 603
           ||||||||||||||||||||
Sbjct: 38  tattcttgtaatgatccttc 19
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>emb|AJ544208.1|GSP544208 Gyromitra esculenta 18S rRNA gene (partial), ITS1, 5.8S rRNA gene,
           ITS2 and 28S rRNA gene (partial), isolate Gyr3
          Length = 846

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 584 tattcttgtaatgatccttc 603
           ||||||||||||||||||||
Sbjct: 38  tattcttgtaatgatccttc 19
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>dbj|AB113399.1| Rattus norvegicus rCNR gene for cadherin-related neuronal receptor, exon
              cluster
          Length = 249555

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 288    aagttctgttgtatatatat 307
              ||||||||||||||||||||
Sbjct: 177173 aagttctgttgtatatatat 177192
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>gb|AE003502.4| Drosophila melanogaster chromosome X, section 54 of 74 of the complete
              sequence
          Length = 304712

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    caaatatgaacaattccaat 155
              ||||||||||||||||||||
Sbjct: 198120 caaatatgaacaattccaat 198139
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>gb|AC159649.3| Mus musculus BAC clone RP23-46D6 from chromosome 12, complete sequence
          Length = 198777

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 524   caccttcttcacaaaagctg 543
             ||||||||||||||||||||
Sbjct: 66488 caccttcttcacaaaagctg 66507
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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 137     aaatatgaacaattccaatg 156
               ||||||||||||||||||||
Sbjct: 5024818 aaatatgaacaattccaatg 5024837


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,517,207
Number of Sequences: 3902068
Number of extensions: 6517207
Number of successful extensions: 158475
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 158224
Number of HSP's gapped (non-prelim): 234
length of query: 632
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 609
effective length of database: 17,143,297,704
effective search space: 10440268301736
effective search space used: 10440268301736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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