Clone Name	rbaal30j09
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	1080	0.0
2	gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo...	858	0.0
3	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	835	0.0
4	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	670	0.0
5	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	628	e-177
6	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	599	e-168
7	emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat...	521	e-145
8	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	400	e-108
9	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
10	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
11	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
12	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
13	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	135	2e-28
14	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	133	9e-28
15	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	133	9e-28
16	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	133	9e-28
17	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	133	9e-28
18	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	133	9e-28
19	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	133	9e-28
20	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	133	9e-28
21	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	125	2e-25
22	gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca...	123	8e-25
23	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	123	8e-25
24	gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas...	121	3e-24
25	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	119	1e-23
26	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	117	5e-23
27	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	103	8e-19
28	gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet...	101	3e-18
29	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	98	5e-17
30	gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox...	96	2e-16
31	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	96	2e-16
32	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	96	2e-16
33	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	82	3e-12
34	emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase	80	1e-11
35	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	78	4e-11
36	dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D...	78	4e-11
37	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	56	2e-04
38	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	54	6e-04
39	gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) ...	48	0.040
40	gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate car...	48	0.040
41	gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec...	44	0.62
42	gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl...	44	0.62
43	emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c...	44	0.62
44	gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, co...	42	2.5
45	gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp...	42	2.5
46	gb|AE006293.1| Lactococcus lactis subsp. lactis IL1403 section 5...	42	2.5
47	emb|BX248505.8| Zebrafish DNA sequence from clone CH211-87L2 in ...	42	2.5
48	gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp...	42	2.5
49	gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, c...	42	2.5
50	gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, com...	42	2.5
51	dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIK...	42	2.5
52	emb|BX255919.15| Zebrafish DNA sequence from clone DKEY-259P11 i...	42	2.5
53	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	42	2.5
54	gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet...	42	2.5
55	emb|Y10657.1|CLRCAGENE C.littorale rca gene	42	2.5
56	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	42	2.5
57	emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa...	42	2.5
58	gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp...	42	2.5
59	gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten...	40	9.7
60	gb|U60105.1| Bos taurus large conductance calcium-activated pota...	40	9.7
61	gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx...	40	9.7
62	gb|AY176327.1| Staphylococcus phage K, complete genome	40	9.7
63	gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre...	40	9.7
64	gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ...	40	9.7
65	ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001...	40	9.7
66	gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet...	40	9.7
67	gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete...	40	9.7
68	gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp...	40	9.7
69	gb|AF026000.2| Sus scrofa calcium-activated potassium channel al...	40	9.7
70	gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc...	40	9.7
71	gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co...	40	9.7
72	ref|NM_174680.2| Bos taurus potassium large conductance calcium-...	40	9.7
73	gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti...	40	9.7
74	dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138	40	9.7
75	gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten...	40	9.7
76	gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN...	40	9.7
77	gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN...	40	9.7
78	gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN...	40	9.7
79	emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ...	40	9.7
80	gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com...	40	9.7
81	ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ...	40	9.7
82	ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot...	40	9.7
83	gb|AY954969.1| Bacteriophage G1, complete genome	40	9.7
84	gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ...	40	9.7
85	gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23...	40	9.7
86	emb|BX571709.23| Zebrafish DNA sequence from clone DKEY-251M8 in...	40	9.7
87	gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone...	40	9.7

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score = 1080 bits (545), Expect = 0.0
 Identities = 583/589 (98%), Gaps = 5/589 (0%)
 Strand = Plus / Minus

                                                                        
Query: 125  tttgccaaatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaa 183
            |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1709 tttgccaaatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaa 1650

                                                                        
Query: 184  tcgcttggatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgc 242
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1649 tcgcttggatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgc 1590

                                                                        
Query: 243  ttaaaaggtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttgg 301
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1589 ttaaaaggtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttgg 1530

                                                                        
Query: 302  cattttggtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacct 360
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1529 cattttggtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacct 1470

                                                                        
Query: 361  cctcctatgcagcaagagatggtgggtgt-gtatggagaattttctaaccgtagaaggaa 419
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1469 cctcctatgcagcaagagatggtgggtgttgtatggagaattttctaaccgtagaaggaa 1410

                                                                        
Query: 420  ccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtca 479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 ccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtca 1350

                                                                        
Query: 480  gcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagc 539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 gcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagc 1290

                                                                        
Query: 540  agcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcacc 599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 agcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcacc 1230

                                                                        
Query: 600  agcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcg 659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 agcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcg 1170

                                                             
Query: 660  tacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggga 708
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 tacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggga 1121

---

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  858 bits (433), Expect = 0.0
 Identities = 574/618 (92%), Gaps = 11/618 (1%)
 Strand = Plus / Minus

                                                                       
Query: 97  tgacaaatgataagtaggtgtattggtctttgccaaatgggtatactcaatatatttaga 156
           |||| ||||||||||||   |||| |||||| |||||| |||||||||||||| ||||  
Sbjct: 803 tgaccaatgataagtagtcctatttgtctttaccaaataggtatactcaatatcttta-- 746

                                                                       
Query: 157 gatatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta---- 211
             |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
Sbjct: 745 --tatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaa 688

                                                                       
Query: 212 -ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcg 270
            | |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcg 629

                                                                       
Query: 271 tcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacg 330
           || ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || 
Sbjct: 628 tcactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtaca 569

                                                                       
Query: 331 ggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtg 390
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtg 509

                                                                       
Query: 391 tatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcac 450
           |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 508 tatggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcac 449

                                                                       
Query: 451 ccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgct 510
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgct 389

                                                                       
Query: 511 cctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcga 570
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 388 cctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaa 329

                                                                       
Query: 571 aggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtag 630
           ||||||| || ||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 328 aggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtag 269

                                                                       
Query: 631 agccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagt 690
           ||   ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 268 aggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagt 209

                             
Query: 691 caatggattgtcctggga 708
           | ||||||||||||||||
Sbjct: 208 cgatggattgtcctggga 191

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  835 bits (421), Expect = 0.0
 Identities = 525/557 (94%), Gaps = 7/557 (1%)
 Strand = Plus / Minus

                                                                        
Query: 158  atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 211
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 212  ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 271
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 272  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 331
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                                                        
Query: 332  gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 391
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358

                                                                        
Query: 392  atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 451
            ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298

                                                                        
Query: 452  cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 511
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 1238

                                                                        
Query: 512  ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 571
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 1237 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaa 1178

                                                                        
Query: 572  ggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtaga 631
            |||||| || ||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 1177 ggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtaga 1118

                                                                        
Query: 632  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 691
            |   ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 ggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtc 1058

                             
Query: 692  aatggattgtcctggga 708
             ||||||||||||||||
Sbjct: 1057 gatggattgtcctggga 1041

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  670 bits (338), Expect = 0.0
 Identities = 357/361 (98%), Gaps = 2/361 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    taataattaataagcctgaagtctnaaattaatactttcttgttctgtttgcaacaaagc 60
            ||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 7881 taataattaataagc-tgaag-ctcaaattaatactttcttgttctgtttgcaacaaagc 7824

                                                                        
Query: 61   agaaggagtctccactgaaggaatgaatactgagagtgacaaatgataagtaggtgtatt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7823 agaaggagtctccactgaaggaatgaatactgagagtgacaaatgataagtaggtgtatt 7764

                                                                        
Query: 121  ggtctttgccaaatgggtatactcaatatatttagagatatattaacaaaacatgcccag 180
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7763 ggtctttgccaaatgggtatacacaatatatttagagatatattaacaaaacatgcccag 7704

                                                                        
Query: 181  caatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcat 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7703 caatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcat 7644

                                                                        
Query: 241  gcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7643 gcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttg 7584

                                                                        
Query: 301  gcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacct 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7583 gcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacct 7524

             
Query: 361  c 361
            |
Sbjct: 7523 c 7523



 Score =  664 bits (335), Expect = 0.0
 Identities = 335/335 (100%)
 Strand = Plus / Minus

                                                                        
Query: 357  acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296

                                                                        
Query: 417  gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236

                                                                        
Query: 477  tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 536
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176

                                                                        
Query: 537  agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 7116

                                                                        
Query: 597  accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 656
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7115 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 7056

                                               
Query: 657  tcgtacacccgagcacgcagagcaccgaaaaagtc 691
            |||||||||||||||||||||||||||||||||||
Sbjct: 7055 tcgtacacccgagcacgcagagcaccgaaaaagtc 7021



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 483  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 542
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902

                                         
Query: 543  ttctcgactgtcatctttggctgctcgaa 571
            ||||| |  |||||||| ||||| |||||
Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                        
Query: 632  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 691
            ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||||
Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 3753

                  
Query: 692  aatgga 697
             |||||
Sbjct: 3752 gatgga 3747

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  628 bits (317), Expect = e-177
 Identities = 490/544 (90%), Gaps = 9/544 (1%)
 Strand = Plus / Minus

                                                                        
Query: 172  catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 225
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 226  -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 284
             || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 285  tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 344
            ||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                                                                        
Query: 345  ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 404
             ||||||||||||||||||||||||||||||||||||||||||||  ||| ||| | |||
Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttc 1356

                                                                        
Query: 405  taaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctgg 464
            |||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296

                                                                        
Query: 465  ctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatg 524
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1295 ctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatg 1236

                                                                        
Query: 525  tgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccg 584
            || |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| |||
Sbjct: 1235 tggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccg 1176

                                                                        
Query: 585  tcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttg 644
            |||||||||||||||||||||||||| |||||||| |||||||| ||    |||||||||
Sbjct: 1175 tcccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttg 1116

                                                                        
Query: 645  cgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcct 704
            ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 1115 cgcacctcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcct 1056

                
Query: 705  ggga 708
            ||||
Sbjct: 1055 ggga 1052

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  599 bits (302), Expect = e-168
 Identities = 302/302 (100%)
 Strand = Plus / Minus

                                                                        
Query: 407  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108

                                                                        
Query: 467  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048

                                                                        
Query: 527  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988

                                                                        
Query: 587  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 928

                                                                        
Query: 647  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 706
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 868

              
Query: 707  ga 708
            ||
Sbjct: 867  ga 866



 Score =  448 bits (226), Expect = e-122
 Identities = 229/230 (99%)
 Strand = Plus / Minus

                                                                        
Query: 130  caaatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgctt 189
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 caaatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgctt 1335

                                                                        
Query: 190  ggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaag 249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 ggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1275

                                                                        
Query: 250  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 1215

                                                              
Query: 310  tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165

---

>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  521 bits (263), Expect = e-145
 Identities = 296/307 (96%)
 Strand = Plus / Minus

                                                                       
Query: 385 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 444
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249

                                                                       
Query: 445 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 504
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189

                                                                       
Query: 505 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 564
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129

                                                                       
Query: 565 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 624
           |||| |||||||| || ||||||||||||||||| ||| ||||||||||||||||||| |
Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcacaagcttcttgccaatgttctcgatac 69

                                                                       
Query: 625 cggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccga 684
           ||||||||   ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 68  cggtagaggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccga 9

                  
Query: 685 aaaagtc 691
           |||||||
Sbjct: 8   aaaagtc 2

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  400 bits (202), Expect = e-108
 Identities = 277/302 (91%)
 Strand = Plus / Minus

                                                                        
Query: 407  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 466
            |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304

                                                                        
Query: 467  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 526
            |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244

                                                                        
Query: 527  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 586
             |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| |||||
Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184

                                                                        
Query: 587  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 646
            |||||||||||||||||||||||| |||||||| |||||||| ||    |||||||||||
Sbjct: 1183 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1124

                                                                        
Query: 647  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 706
            |||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 1123 cacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcctgg 1064

              
Query: 707  ga 708
            ||
Sbjct: 1063 ga 1062



 Score =  176 bits (89), Expect = 6e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                        
Query: 231  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 290
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 291  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 350
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 351  tcctttacc 359
            |||||||||
Sbjct: 1369 tcctttacc 1361

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                                                        
Query: 300  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 356
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395

                      
Query: 357  acctcctcct 366
             |||||||||
Sbjct: 1394 ccctcctcct 1385



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 406  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 465
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251

                                                                        
Query: 466  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 525
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191

                                                                        
Query: 526  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 585
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1131

                                              
Query: 586  cccgcgagttcaccagcctcttgccaatgttctc 619
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 636  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 695
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1021

                         
Query: 696  gattgtcctggga 708
            ||||| |||||||
Sbjct: 1020 gattggcctggga 1008

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                                                        
Query: 300  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 356
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433

                      
Query: 357  acctcctcct 366
             |||||||||
Sbjct: 1432 ccctcctcct 1423



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 406  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 465
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289

                                                                        
Query: 466  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 525
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229

                                                                        
Query: 526  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 585
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1169

                                              
Query: 586  cccgcgagttcaccagcctcttgccaatgttctc 619
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 636  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 695
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1059

                         
Query: 696  gattgtcctggga 708
            ||||| |||||||
Sbjct: 1058 gattggcctggga 1046

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                                                        
Query: 300  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 356
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432

                      
Query: 357  acctcctcct 366
             |||||||||
Sbjct: 1431 ccctcctcct 1422



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 406  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 465
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288

                                                                        
Query: 466  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 525
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228

                                                                        
Query: 526  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 585
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1168

                                              
Query: 586  cccgcgagttcaccagcctcttgccaatgttctc 619
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 636  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 695
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1058

                         
Query: 696  gattgtcctggga 708
            ||||| |||||||
Sbjct: 1057 gattggcctggga 1045

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                                                        
Query: 300  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 356
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216

                      
Query: 357  acctcctcct 366
             |||||||||
Sbjct: 1215 ccctcctcct 1206



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 406  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 465
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072

                                                                        
Query: 466  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 525
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012

                                                                        
Query: 526  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 585
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 952

                                              
Query: 586  cccgcgagttcaccagcctcttgccaatgttctc 619
            ||| ||||||||||||||||||||||||||||||
Sbjct: 951  ccctcgagttcaccagcctcttgccaatgttctc 918



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 636 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 695
           ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 842

                        
Query: 696 gattgtcctggga 708
           ||||| |||||||
Sbjct: 841 gattggcctggga 829

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                                                        
Query: 300  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 356
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437

                      
Query: 357  acctcctcct 366
             |||||||||
Sbjct: 1436 ccctcctcct 1427



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 406  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 465
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293

                                                                        
Query: 466  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 525
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233

                                                                        
Query: 526  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 585
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1173

                                              
Query: 586  cccgcgagttcaccagcctcttgccaatgttctc 619
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 636  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 695
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1063

                         
Query: 696  gattgtcctggga 708
            ||||| |||||||
Sbjct: 1062 gattggcctggga 1050

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 9e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 240    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 300    ggcattttggtcggtgcaaccttccggcacgggca 334
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                          
Query: 403    tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 462
              |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365

                                                                          
Query: 463    ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 522
               ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425

                                                                          
Query: 523    tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 582
              |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 108485

                                                   
Query: 583    cgtcccgcgagttcaccagcctcttgccaatgttctc 619
              | |||| ||||||||||||||||||||||||||||||
Sbjct: 108486 cctccctcgagttcaccagcctcttgccaatgttctc 108522



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 258    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 317
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 318    accttccggcacggg 332
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                
Query: 636    acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 685
              ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 108588



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 591    gagttcaccagcctcttgccaatgttctc 619
              ||||||||||||||| |||| ||||||||
Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 9e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 240   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 300   ggcattttggtcggtgcaaccttccggcacgggca 334
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                         
Query: 403   tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 462
             |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242

                                                                         
Query: 463   ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 522
              ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302

                                                                         
Query: 523   tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 582
             |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 30362

                                                  
Query: 583   cgtcccgcgagttcaccagcctcttgccaatgttctc 619
             | |||| ||||||||||||||||||||||||||||||
Sbjct: 30363 cctccctcgagttcaccagcctcttgccaatgttctc 30399



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 258   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 317
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 318   accttccggcacggg 332
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 636   acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 685
             ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 30465



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 591   gagttcaccagcctcttgccaatgttctc 619
             ||||||||||||||| |||| ||||||||
Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 9e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 300  ggcattttggtcggtgcaaccttccggcacgggca 334
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 406  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 465
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257

                                                                        
Query: 466  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 525
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197

                                                                        
Query: 526  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 585
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1137

                                              
Query: 586  cccgcgagttcaccagcctcttgccaatgttctc 619
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 636  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 695
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1027

                         
Query: 696  gattgtcctggga 708
            ||||| |||||||
Sbjct: 1026 gattggcctggga 1014

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 9e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 300  ggcattttggtcggtgcaaccttccggcacgggca 334
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 408  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 467
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250

                                                                        
Query: 468  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 527
            | |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||  
Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190

                                                                        
Query: 528  ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 587
            |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |||
Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130

                                            
Query: 588  cgcgagttcaccagcctcttgccaatgttctc 619
            | ||||||||||||||||||||||||||||||
Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctc 1098



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 636  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 695
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1022

                         
Query: 696  gattgtcctggga 708
            ||||| |||||||
Sbjct: 1021 gattggcctggga 1009

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 9e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 240      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 300      ggcattttggtcggtgcaaccttccggcacgggca 334
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                            
Query: 403      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 462
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504

                                                                            
Query: 463      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 522
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564

                                                                            
Query: 523      tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 582
                |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28303624

                                                     
Query: 583      cgtcccgcgagttcaccagcctcttgccaatgttctc 619
                | |||| ||||||||||||||||||||||||||||||
Sbjct: 28303625 cctccctcgagttcaccagcctcttgccaatgttctc 28303661



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 258      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 317
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 318      accttccggcacggg 332
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 636      acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 685
                ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28303727



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 591      gagttcaccagcctcttgccaatgttctc 619
                ||||||||||||||| |||| ||||||||
Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 9e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 240      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 300      ggcattttggtcggtgcaaccttccggcacgggca 334
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                            
Query: 403      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 462
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953

                                                                            
Query: 463      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 522
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013

                                                                            
Query: 523      tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 582
                |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28286073

                                                     
Query: 583      cgtcccgcgagttcaccagcctcttgccaatgttctc 619
                | |||| ||||||||||||||||||||||||||||||
Sbjct: 28286074 cctccctcgagttcaccagcctcttgccaatgttctc 28286110



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 258      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 317
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 318      accttccggcacggg 332
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 636      acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 685
                ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28286176



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 591      gagttcaccagcctcttgccaatgttctc 619
                ||||||||||||||| |||| ||||||||
Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 9e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 300  ggcattttggtcggtgcaaccttccggcacgggca 334
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 408  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 467
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285

                                                                        
Query: 468  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 527
            | |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||  
Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225

                                                                        
Query: 528  ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 587
            |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |||
Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165

                                            
Query: 588  cgcgagttcaccagcctcttgccaatgttctc 619
            | ||||||||||||||||||||||||||||||
Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctc 1133



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 636  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 695
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1057

                         
Query: 696  gattgtcctggga 708
            ||||| |||||||
Sbjct: 1056 gattggcctggga 1044

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score =  125 bits (63), Expect = 2e-25
 Identities = 171/207 (82%)
 Strand = Plus / Minus

                                                                        
Query: 404  ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 463
            |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| 
Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948

                                                                        
Query: 464  gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 523
            ||||| |||  |||| || |||||||| | ||| || || ||||||||||| || |||||
Sbjct: 947  gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888

                                                                        
Query: 524  gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 583
            ||  |||||||| |||||||| || |  |||||||| |||||| |||| |||   |||||
Sbjct: 887  gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828

                                       
Query: 584  gtcccgcgagttcaccagcctcttgcc 610
             ||| ||||||||||||||||||||||
Sbjct: 827  ctccagcgagttcaccagcctcttgcc 801



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 250  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 309
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 310  tcggtgcaaccttc 323
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 638 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 697
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 773 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 714

              
Query: 698 ttg 700
           |||
Sbjct: 713 ttg 711

---

>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                       
Query: 406 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 465
           ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506

                                                                       
Query: 466 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 525
           ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446

                                                                       
Query: 526 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 585
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 386

                                             
Query: 586 cccgcgagttcaccagcctcttgccaatgttctc 619
           ||| ||||||||||||||||||||||||||||||
Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 636 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 695
           ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 276

                        
Query: 696 gattgtcctggga 708
           ||||| |||||||
Sbjct: 275 gattggcctggga 263

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 406  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 465
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300

                                                                        
Query: 466  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 525
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240

                                                                        
Query: 526  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 585
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1180

                                              
Query: 586  cccgcgagttcaccagcctcttgccaatgttctc 619
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146



 Score =  119 bits (60), Expect = 1e-23
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                                                        
Query: 300  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 356
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444

                      
Query: 357  acctcctcct 366
             |||||||||
Sbjct: 1443 ccctcctcct 1434



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 636  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 695
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1070

                         
Query: 696  gattgtcctggga 708
            ||||| |||||||
Sbjct: 1069 gattggcctggga 1057

---

>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 3e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 246 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 305
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 306 ttggtcggtgcaaccttccggcacgggca 334
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score =  119 bits (60), Expect = 1e-23
 Identities = 165/200 (82%)
 Strand = Plus / Minus

                                                                        
Query: 411  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 470
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135

                                                                        
Query: 471  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 530
            ||  |||| || |||||||| | ||| || || ||||||||||| || |||||||  |||
Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075

                                                                        
Query: 531  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 590
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015

                                
Query: 591  gagttcaccagcctcttgcc 610
            ||||||||||||||||||||
Sbjct: 1014 gagttcaccagcctcttgcc 995



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 250  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 309
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 310  tcggtgcaaccttc 323
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 638 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 697
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 967 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 908

              
Query: 698 ttg 700
           |||
Sbjct: 907 ttg 905

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1525

 Score =  117 bits (59), Expect = 5e-23
 Identities = 176/215 (81%)
 Strand = Plus / Minus

                                                                        
Query: 483  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 542
            |||||||| ||||| || || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183

                                                                        
Query: 543  ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 602
            |||||||  |||||||| ||||| ||||| |||   ||||| ||||  ||||| || |||
Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123

                                                                        
Query: 603  ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 662
            | ||||   ||||||||||  ||| |   ||||||||||||||||||||| |||||||||
Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063

                                               
Query: 663  acccgagcacgcagagcaccgaaaaagtcaatgga 697
            ||||| || ||||| || ||||| ||||| |||||
Sbjct: 1062 acccgcgcccgcagcgcgccgaagaagtcgatgga 1028

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score =  103 bits (52), Expect = 8e-19
 Identities = 166/204 (81%)
 Strand = Plus / Minus

                                                                        
Query: 404  ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 463
            |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| 
Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249

                                                                        
Query: 464  gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 523
            ||||| |||  |||| || |||||||| | ||| || || ||||| ||||| || |||||
Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189

                                                                        
Query: 524  gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 583
             |  |||||||| |||||||| || |  |||||||| |||||| |||| |||   |||||
Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129

                                    
Query: 584  gtcccgcgagttcaccagcctctt 607
             ||| |||||||||||||||||||
Sbjct: 1128 ctccagcgagttcaccagcctctt 1105



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 250  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 309
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 310  tcggtgcaaccttc 323
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 638  ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 697
            |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 1074 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 1015

               
Query: 698  ttg 700
            |||
Sbjct: 1014 ttg 1012

---

>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 240 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 300 ggcattttggtcggtgcaaccttccggcacgggca 334
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 160/197 (81%)
 Strand = Plus / Minus

                                                                        
Query: 411  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 470
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105

                                                                        
Query: 471  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 530
            ||  |||| || |||||||| | ||| || || ||||| ||||| || ||||| |  |||
Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045

                                                                        
Query: 531  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 590
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985

                             
Query: 591  gagttcaccagcctctt 607
            |||||||||||||||||
Sbjct: 984  gagttcaccagcctctt 968



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 250  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 309
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 310  tcggtgcaaccttc 323
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 638 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 697
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 937 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 878

              
Query: 698 ttg 700
           |||
Sbjct: 877 ttg 875

---

>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                       
Query: 412 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 471
           ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                                                       
Query: 472 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 531
           |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800

                                                   
Query: 532 actctagcagcttctcgactgtcatctttggctgctcgaa 571
           |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 412  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 471
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 472  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 531
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 532  actctagcagcttctcgactgtcatctttggctgctcgaa 571
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 412  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 471
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 472  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 531
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 532  actctagcagcttctcgactgtcatctttggctgctcgaa 571
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 483  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 542
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333

                                         
Query: 543  ttctcgactgtcatctttggctgctcgaa 571
            ||||| |  |||||||| ||||| |||||
Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                        
Query: 632  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 691
            ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||||
Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 1184

                  
Query: 692  aatgga 697
             |||||
Sbjct: 1183 gatgga 1178

---

>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                       
Query: 429 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 488
           |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || 
Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59

                                                                   
Query: 489 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 544
           || | ||| |||||||||||||||||||| |||||||  || ||||||||||||||
Sbjct: 58  actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 240     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 300     ggcattttggtcggtgcaaccttccggcacgggca 334
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319

---

>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 240   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 300   ggcattttggtcggtgcaaccttccggcacgggca 334
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            mRNA
          Length = 1853

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 106/132 (80%)
 Strand = Plus / Minus

                                                                        
Query: 440  gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 499
            |||||||||||| ||||| |||| ||||| |||  | ||||| |  || || | ||| ||
Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304

                                                                        
Query: 500  attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 559
            ||| || ||||| ||||| |||||||  |||||||| || ||||| ||||  ||||||||
Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244

                        
Query: 560  tggctgctcgaa 571
             |||||||||||
Sbjct: 1243 cggctgctcgaa 1232

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
            activase 1 mRNA, complete cds
          Length = 1559

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 674  cagagcaccgaaaaagtcaatggattg 700
            |||||||||||||||||||||||||||
Sbjct: 1113 cagagcaccgaaaaagtcaatggattg 1087

---

>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds
          Length = 4500

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 654  tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 697
            ||||||||||| || |||||||| || ||||| |||||||||||
Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatgga 2680

---

>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase
            activase mRNA, complete cds
          Length = 1693

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 654  tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 697
            ||||||||||| || |||||||| || ||||| |||||||||||
Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatgga 990

---

>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 432  gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 481
            |||||||||||||||||||| || || ||||  ||||||||  |||||||
Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306

---

>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 445   catcacccagagctgcctggct 466
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254

---

>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 145   aatatatttagagatatattaa 166
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963

---

>gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, complete sequence
          Length = 178257

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 102    aatgataagtaggtgtattgg 122
              |||||||||||||||||||||
Sbjct: 109370 aatgataagtaggtgtattgg 109390

---

>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 147   tatatttagagatatattaac 167
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335

---

>gb|AE006293.1| Lactococcus lactis subsp. lactis IL1403 section 55 of 218 of the
            complete genome
          Length = 10029

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 29   ttaatactttcttgttctgtt 49
            |||||||||||||||||||||
Sbjct: 5007 ttaatactttcttgttctgtt 4987

---

>emb|BX248505.8| Zebrafish DNA sequence from clone CH211-87L2 in linkage group 14,
              complete sequence
          Length = 189425

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 33     tactttcttgttctgtttgca 53
              |||||||||||||||||||||
Sbjct: 142947 tactttcttgttctgtttgca 142967

---

>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   tatatttagagatatattaac 167
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367

---

>gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, complete sequence
          Length = 217738

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 102    aatgataagtaggtgtattgg 122
              |||||||||||||||||||||
Sbjct: 149522 aatgataagtaggtgtattgg 149502

---

>gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, complete sequence
          Length = 168084

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 102    aatgataagtaggtgtattgg 122
              |||||||||||||||||||||
Sbjct: 131097 aatgataagtaggtgtattgg 131077

---

>dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530024M06 product:Hypothetical
            protein FLJ33092 (UST1r) homolog [Homo sapiens], full
            insert sequence
          Length = 2605

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 102  aatgataagtaggtgtattgg 122
            |||||||||||||||||||||
Sbjct: 2351 aatgataagtaggtgtattgg 2331

---

>emb|BX255919.15| Zebrafish DNA sequence from clone DKEY-259P11 in linkage group 8,
              complete sequence
          Length = 168607

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 33     tactttcttgttctgtttgca 53
              |||||||||||||||||||||
Sbjct: 109335 tactttcttgttctgtttgca 109355

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 216     aaacatcagatattaaaagtg 236
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420

---

>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 367   atgcagcaagagatggtgggt 387
             |||||||||||||||||||||
Sbjct: 63530 atgcagcaagagatggtgggt 63550

---

>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 483  agctgcacacgcttgacattgtcctgctc 511
            |||||||| ||||||||||| ||||||||
Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 216     aaacatcagatattaaaagtg 236
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365

---

>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 216    aaacatcagatattaaaagtg 236
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423

---

>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 147  tatatttagagatatattaac 167
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197

---

>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 352   cctttacctcctcctatgca 371
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378

---

>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 445  catcacccagagctgcctggctca 468
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565

---

>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 352  cctttacctcctcctatgca 371
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656

---

>gb|AY176327.1| Staphylococcus phage K, complete genome
          Length = 127395

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 26    aaattaatactttcttgttctgtt 49
             ||||||||| ||||||||||||||
Sbjct: 18058 aaattaataatttcttgttctgtt 18081

---

>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                        
Query: 441  ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 500
            ||||||||||| ||||| |||| |  ||||||  ||||||| |  || || | |||||| 
Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287

                                    
Query: 501  ttgtcctgctcctggacgagcatg 524
            || |||||||||||||| ||||||
Sbjct: 1286 ttctcctgctcctggacaagcatg 1263

---

>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 352   cctttacctcctcctatgca 371
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964

---

>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 476 gtcagcaagctgcacacgct 495
           ||||||||||||||||||||
Sbjct: 242 gtcagcaagctgcacacgct 223

---

>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    tcagatattaaaagtggcat 240
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077

---

>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    tcagatattaaaagtggcat 240
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583

---

>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   tcagatattaaaagtggcat 240
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911

---

>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 445  catcacccagagctgcctggctca 468
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   aatatatttagagatatatt 164
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473

---

>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 495    ttgacattgtcctgctcctg 514
              ||||||||||||||||||||
Sbjct: 126438 ttgacattgtcctgctcctg 126419

---

>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 445  catcacccagagctgcctggctca 468
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 249  ggtgtaaaggcagctgccgtcgtcgctc 276
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133

---

>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 169   aaacatgcccagcaatcgcttgga 192
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715

---

>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 352   cctttacctcctcctatgca 371
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681

---

>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 445  catcacccagagctgcctggctca 468
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659

---

>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 445  catcacccagagctgcctggctca 468
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026

---

>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 445  catcacccagagctgcctggctca 468
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   tggcatgcttaaaaggtgta 254
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254

---

>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 495    ttgacattgtcctgctcctg 514
              ||||||||||||||||||||
Sbjct: 106960 ttgacattgtcctgctcctg 106979

---

>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 445  catcacccagagctgcctggctca 468
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 341 cttgctgtgctcctttacctcctc 364
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625

---

>gb|AY954969.1| Bacteriophage G1, complete genome
          Length = 138715

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 26     aaattaatactttcttgttctgtt 49
              ||||||||| ||||||||||||||
Sbjct: 121558 aaattaataatttcttgttctgtt 121581

---

>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   cctttacctcctcctatgca 371
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736

---

>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   aatatatttagagatatatt 164
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485

---

>emb|BX571709.23| Zebrafish DNA sequence from clone DKEY-251M8 in linkage group 11,
             complete sequence
          Length = 154382

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 84    tgaatactgagagtgacaaatgat 107
             ||||||||||||||| ||||||||
Sbjct: 41193 tgaatactgagagtgtcaaatgat 41216

---

>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 220    atcagatattaaaagtggcatgct 243
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,797,307
Number of Sequences: 3902068
Number of extensions: 5797307
Number of successful extensions: 110954
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 110539
Number of HSP's gapped (non-prelim): 362
length of query: 708
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 685
effective length of database: 17,143,297,704
effective search space: 11743158927240
effective search space used: 11743158927240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---